Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00515

Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00514 and MPMX20_00515 are separated by 197 nucleotidesMPMX20_00515 and MPMX20_00516 are separated by 93 nucleotidesMPMX20_00516 and MPMX20_00517 are separated by 95 nucleotides MPMX20_00514: MPMX20_00514 - Fructose-1,6-bisphosphatase class 1, at 531,789 to 532,787 _00514 MPMX20_00515: MPMX20_00515 - UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase, at 532,985 to 534,361 _00515 MPMX20_00516: MPMX20_00516 - hypothetical protein, at 534,455 to 535,006 _00516 MPMX20_00517: MPMX20_00517 - Metalloprotease PmbA, at 535,102 to 536,454 _00517 Position (kb) 532 533 534 535Strain fitness (log2 ratio) -2 -1 0 1 2at 531.991 kb on + strand, within MPMX20_00514at 531.993 kb on - strand, within MPMX20_00514at 532.003 kb on - strand, within MPMX20_00514at 532.014 kb on + strand, within MPMX20_00514at 532.016 kb on + strand, within MPMX20_00514at 532.022 kb on - strand, within MPMX20_00514at 532.035 kb on - strand, within MPMX20_00514at 532.042 kb on + strand, within MPMX20_00514at 532.050 kb on - strand, within MPMX20_00514at 532.089 kb on - strand, within MPMX20_00514at 532.107 kb on - strand, within MPMX20_00514at 532.141 kb on + strand, within MPMX20_00514at 532.190 kb on - strand, within MPMX20_00514at 532.191 kb on - strand, within MPMX20_00514at 532.211 kb on - strand, within MPMX20_00514at 532.211 kb on - strand, within MPMX20_00514at 532.265 kb on - strand, within MPMX20_00514at 532.279 kb on + strand, within MPMX20_00514at 532.279 kb on + strand, within MPMX20_00514at 532.287 kb on - strand, within MPMX20_00514at 532.287 kb on - strand, within MPMX20_00514at 532.287 kb on - strand, within MPMX20_00514at 532.287 kb on - strand, within MPMX20_00514at 532.400 kb on - strand, within MPMX20_00514at 532.469 kb on - strand, within MPMX20_00514at 532.469 kb on - strand, within MPMX20_00514at 532.474 kb on - strand, within MPMX20_00514at 532.484 kb on + strand, within MPMX20_00514at 532.492 kb on - strand, within MPMX20_00514at 532.527 kb on + strand, within MPMX20_00514at 532.536 kb on - strand, within MPMX20_00514at 532.559 kb on + strand, within MPMX20_00514at 532.559 kb on + strand, within MPMX20_00514at 532.599 kb on + strand, within MPMX20_00514at 532.612 kb on + strand, within MPMX20_00514at 532.614 kb on - strand, within MPMX20_00514at 532.628 kb on - strand, within MPMX20_00514at 532.660 kb on + strand, within MPMX20_00514at 532.673 kb on - strand, within MPMX20_00514at 532.705 kb on - strandat 532.713 kb on - strandat 532.717 kb on + strandat 532.717 kb on + strandat 532.717 kb on + strandat 532.717 kb on + strandat 532.717 kb on + strandat 532.717 kb on + strandat 532.718 kb on - strandat 532.725 kb on - strandat 532.729 kb on + strandat 532.754 kb on - strandat 532.780 kb on - strandat 532.813 kb on - strandat 532.873 kb on - strandat 532.878 kb on + strandat 532.878 kb on + strandat 532.878 kb on + strandat 532.883 kb on + strandat 532.883 kb on + strandat 532.883 kb on + strandat 532.891 kb on - strandat 532.944 kb on - strandat 532.944 kb on - strandat 532.981 kb on - strandat 533.000 kb on - strandat 533.032 kb on + strandat 533.077 kb on - strandat 533.155 kb on + strand, within MPMX20_00515at 533.188 kb on - strand, within MPMX20_00515at 533.233 kb on - strand, within MPMX20_00515at 533.250 kb on + strand, within MPMX20_00515at 533.253 kb on - strand, within MPMX20_00515at 533.253 kb on - strand, within MPMX20_00515at 533.402 kb on - strand, within MPMX20_00515at 533.473 kb on - strand, within MPMX20_00515at 533.473 kb on - strand, within MPMX20_00515at 533.473 kb on - strand, within MPMX20_00515at 533.502 kb on - strand, within MPMX20_00515at 533.502 kb on - strand, within MPMX20_00515at 533.572 kb on + strand, within MPMX20_00515at 533.572 kb on + strand, within MPMX20_00515at 533.591 kb on + strand, within MPMX20_00515at 533.616 kb on + strand, within MPMX20_00515at 533.621 kb on + strand, within MPMX20_00515at 533.626 kb on + strand, within MPMX20_00515at 533.629 kb on - strand, within MPMX20_00515at 533.765 kb on + strand, within MPMX20_00515at 533.773 kb on - strand, within MPMX20_00515at 533.786 kb on - strand, within MPMX20_00515at 533.883 kb on - strand, within MPMX20_00515at 533.925 kb on + strand, within MPMX20_00515at 533.925 kb on + strand, within MPMX20_00515at 533.933 kb on - strand, within MPMX20_00515at 533.952 kb on + strand, within MPMX20_00515at 533.960 kb on + strand, within MPMX20_00515at 534.062 kb on - strand, within MPMX20_00515at 534.062 kb on - strand, within MPMX20_00515at 534.114 kb on + strand, within MPMX20_00515at 534.122 kb on - strand, within MPMX20_00515at 534.205 kb on + strand, within MPMX20_00515at 534.211 kb on - strand, within MPMX20_00515at 534.244 kb on + strandat 534.259 kb on + strandat 534.335 kb on - strandat 534.411 kb on - strandat 534.427 kb on + strandat 534.435 kb on - strandat 534.437 kb on - strandat 534.448 kb on - strandat 534.460 kb on - strandat 535.036 kb on - strandat 535.047 kb on + strandat 535.063 kb on - strandat 535.070 kb on + strandat 535.070 kb on + strandat 535.078 kb on - strandat 535.090 kb on + strandat 535.100 kb on + strandat 535.100 kb on - strandat 535.100 kb on - strandat 535.100 kb on - strandat 535.108 kb on - strandat 535.125 kb on - strandat 535.143 kb on + strandat 535.151 kb on - strandat 535.177 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4
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531,991 + MPMX20_00514 0.20 -1.8
531,993 - MPMX20_00514 0.20 -0.7
532,003 - MPMX20_00514 0.21 -1.4
532,014 + MPMX20_00514 0.23 -1.2
532,016 + MPMX20_00514 0.23 -0.4
532,022 - MPMX20_00514 0.23 +0.6
532,035 - MPMX20_00514 0.25 -1.4
532,042 + MPMX20_00514 0.25 -1.2
532,050 - MPMX20_00514 0.26 -0.4
532,089 - MPMX20_00514 0.30 +0.4
532,107 - MPMX20_00514 0.32 +0.2
532,141 + MPMX20_00514 0.35 +0.6
532,190 - MPMX20_00514 0.40 -1.5
532,191 - MPMX20_00514 0.40 -2.1
532,211 - MPMX20_00514 0.42 +0.3
532,211 - MPMX20_00514 0.42 -0.7
532,265 - MPMX20_00514 0.48 -0.7
532,279 + MPMX20_00514 0.49 +0.6
532,279 + MPMX20_00514 0.49 -0.1
532,287 - MPMX20_00514 0.50 +0.6
532,287 - MPMX20_00514 0.50 +0.6
532,287 - MPMX20_00514 0.50 +1.6
532,287 - MPMX20_00514 0.50 -2.0
532,400 - MPMX20_00514 0.61 -0.7
532,469 - MPMX20_00514 0.68 +0.4
532,469 - MPMX20_00514 0.68 -0.7
532,474 - MPMX20_00514 0.69 -2.1
532,484 + MPMX20_00514 0.70 -1.8
532,492 - MPMX20_00514 0.70 +0.6
532,527 + MPMX20_00514 0.74 +0.1
532,536 - MPMX20_00514 0.75 +0.6
532,559 + MPMX20_00514 0.77 -1.8
532,559 + MPMX20_00514 0.77 -1.9
532,599 + MPMX20_00514 0.81 -0.4
532,612 + MPMX20_00514 0.82 -0.9
532,614 - MPMX20_00514 0.83 -1.4
532,628 - MPMX20_00514 0.84 -1.4
532,660 + MPMX20_00514 0.87 -0.7
532,673 - MPMX20_00514 0.88 +0.8
532,705 - -0.2
532,713 - -0.4
532,717 + +1.6
532,717 + +1.6
532,717 + -0.4
532,717 + -2.4
532,717 + -0.4
532,717 + -1.4
532,718 - -1.2
532,725 - -0.7
532,729 + +0.1
532,754 - -2.3
532,780 - +0.3
532,813 - -1.7
532,873 - -0.4
532,878 + -0.4
532,878 + -1.4
532,878 + -0.4
532,883 + -0.4
532,883 + -0.8
532,883 + -0.2
532,891 - -0.8
532,944 - -0.9
532,944 - -1.7
532,981 - +0.4
533,000 - -2.2
533,032 + +0.2
533,077 - -0.6
533,155 + MPMX20_00515 0.12 -0.2
533,188 - MPMX20_00515 0.15 +1.6
533,233 - MPMX20_00515 0.18 +0.7
533,250 + MPMX20_00515 0.19 -0.6
533,253 - MPMX20_00515 0.19 +0.3
533,253 - MPMX20_00515 0.19 +0.1
533,402 - MPMX20_00515 0.30 -0.8
533,473 - MPMX20_00515 0.35 -1.1
533,473 - MPMX20_00515 0.35 +0.5
533,473 - MPMX20_00515 0.35 -0.7
533,502 - MPMX20_00515 0.38 -1.3
533,502 - MPMX20_00515 0.38 -0.2
533,572 + MPMX20_00515 0.43 -0.9
533,572 + MPMX20_00515 0.43 +0.3
533,591 + MPMX20_00515 0.44 +1.1
533,616 + MPMX20_00515 0.46 +0.3
533,621 + MPMX20_00515 0.46 -0.9
533,626 + MPMX20_00515 0.47 -1.1
533,629 - MPMX20_00515 0.47 -0.8
533,765 + MPMX20_00515 0.57 -0.4
533,773 - MPMX20_00515 0.57 -0.1
533,786 - MPMX20_00515 0.58 -2.4
533,883 - MPMX20_00515 0.65 +0.1
533,925 + MPMX20_00515 0.68 -0.0
533,925 + MPMX20_00515 0.68 +0.9
533,933 - MPMX20_00515 0.69 +0.1
533,952 + MPMX20_00515 0.70 +0.5
533,960 + MPMX20_00515 0.71 -0.1
534,062 - MPMX20_00515 0.78 +1.2
534,062 - MPMX20_00515 0.78 -0.7
534,114 + MPMX20_00515 0.82 -0.6
534,122 - MPMX20_00515 0.83 +0.5
534,205 + MPMX20_00515 0.89 +0.3
534,211 - MPMX20_00515 0.89 -2.2
534,244 + -0.8
534,259 + -1.4
534,335 - -1.0
534,411 - -0.4
534,427 + +1.3
534,435 - -0.2
534,437 - -0.3
534,448 - +0.6
534,460 - -0.4
535,036 - +0.1
535,047 + +2.6
535,063 - +0.8
535,070 + -0.5
535,070 + -0.2
535,078 - -1.4
535,090 + +0.2
535,100 + +1.6
535,100 - -0.5
535,100 - +0.6
535,100 - +0.5
535,108 - +0.3
535,125 - +1.7
535,143 + -0.1
535,151 - +0.3
535,177 - -1.4

Or see this region's nucleotide sequence