Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00289 and MPMX20_00290 overlap by 4 nucleotides MPMX20_00290 and MPMX20_00291 are separated by 70 nucleotides MPMX20_00291 and MPMX20_00292 are separated by 423 nucleotides
MPMX20_00289: MPMX20_00289 - Cation/acetate symporter ActP, at 307,747 to 309,396
_00289
MPMX20_00290: MPMX20_00290 - Inner membrane protein YjcH, at 309,393 to 309,707
_00290
MPMX20_00291: MPMX20_00291 - Acetyl-coenzyme A synthetase, at 309,778 to 311,736
_00291
MPMX20_00292: MPMX20_00292 - Proton/glutamate-aspartate symporter, at 312,160 to 313,473
_00292
Position (kb) 309
310
311
312 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 308.790 kb on - strand, within MPMX20_00289 at 308.798 kb on + strand, within MPMX20_00289 at 308.820 kb on - strand, within MPMX20_00289 at 308.856 kb on + strand, within MPMX20_00289 at 308.917 kb on - strand, within MPMX20_00289 at 308.917 kb on - strand, within MPMX20_00289 at 308.928 kb on + strand, within MPMX20_00289 at 308.952 kb on - strand, within MPMX20_00289 at 308.952 kb on - strand, within MPMX20_00289 at 308.970 kb on + strand, within MPMX20_00289 at 308.970 kb on + strand, within MPMX20_00289 at 309.009 kb on + strand, within MPMX20_00289 at 309.058 kb on + strand, within MPMX20_00289 at 309.066 kb on - strand, within MPMX20_00289 at 309.099 kb on - strand, within MPMX20_00289 at 309.104 kb on + strand, within MPMX20_00289 at 309.104 kb on + strand, within MPMX20_00289 at 309.104 kb on + strand, within MPMX20_00289 at 309.104 kb on + strand, within MPMX20_00289 at 309.111 kb on - strand, within MPMX20_00289 at 309.111 kb on - strand, within MPMX20_00289 at 309.112 kb on - strand, within MPMX20_00289 at 309.112 kb on - strand, within MPMX20_00289 at 309.112 kb on - strand, within MPMX20_00289 at 309.112 kb on - strand, within MPMX20_00289 at 309.112 kb on - strand, within MPMX20_00289 at 309.203 kb on + strand, within MPMX20_00289 at 309.203 kb on + strand, within MPMX20_00289 at 309.213 kb on + strand, within MPMX20_00289 at 309.256 kb on - strand at 309.258 kb on - strand at 309.318 kb on + strand at 309.371 kb on - strand at 309.389 kb on - strand at 309.408 kb on - strand at 309.411 kb on + strand at 309.421 kb on + strand at 309.429 kb on - strand, within MPMX20_00290 at 309.461 kb on + strand, within MPMX20_00290 at 309.479 kb on - strand, within MPMX20_00290 at 309.505 kb on - strand, within MPMX20_00290 at 309.561 kb on + strand, within MPMX20_00290 at 309.563 kb on - strand, within MPMX20_00290 at 309.574 kb on - strand, within MPMX20_00290 at 309.579 kb on + strand, within MPMX20_00290 at 309.584 kb on + strand, within MPMX20_00290 at 309.584 kb on + strand, within MPMX20_00290 at 309.584 kb on + strand, within MPMX20_00290 at 309.592 kb on - strand, within MPMX20_00290 at 309.592 kb on - strand, within MPMX20_00290 at 309.656 kb on + strand, within MPMX20_00290 at 309.665 kb on + strand, within MPMX20_00290 at 309.666 kb on - strand, within MPMX20_00290 at 309.678 kb on + strand at 309.713 kb on - strand at 309.713 kb on - strand at 309.754 kb on + strand at 309.762 kb on - strand at 309.799 kb on - strand at 309.799 kb on - strand at 309.799 kb on - strand at 309.845 kb on - strand at 309.851 kb on - strand at 309.862 kb on - strand at 309.901 kb on + strand at 309.937 kb on + strand at 309.949 kb on - strand at 309.949 kb on - strand at 309.954 kb on - strand at 310.010 kb on - strand, within MPMX20_00291 at 310.014 kb on + strand, within MPMX20_00291 at 310.014 kb on + strand, within MPMX20_00291 at 310.019 kb on + strand, within MPMX20_00291 at 310.022 kb on - strand, within MPMX20_00291 at 310.034 kb on - strand, within MPMX20_00291 at 310.174 kb on + strand, within MPMX20_00291 at 310.284 kb on - strand, within MPMX20_00291 at 310.289 kb on - strand, within MPMX20_00291 at 310.401 kb on + strand, within MPMX20_00291 at 310.401 kb on + strand, within MPMX20_00291 at 310.425 kb on - strand, within MPMX20_00291 at 310.425 kb on - strand, within MPMX20_00291 at 310.436 kb on + strand, within MPMX20_00291 at 310.436 kb on + strand, within MPMX20_00291 at 310.436 kb on + strand, within MPMX20_00291 at 310.436 kb on + strand, within MPMX20_00291 at 310.444 kb on - strand, within MPMX20_00291 at 310.458 kb on + strand, within MPMX20_00291 at 310.458 kb on + strand, within MPMX20_00291 at 310.458 kb on + strand, within MPMX20_00291 at 310.458 kb on + strand, within MPMX20_00291 at 310.466 kb on - strand, within MPMX20_00291 at 310.466 kb on - strand, within MPMX20_00291 at 310.466 kb on - strand, within MPMX20_00291 at 310.466 kb on - strand, within MPMX20_00291 at 310.478 kb on - strand, within MPMX20_00291 at 310.494 kb on + strand, within MPMX20_00291 at 310.494 kb on + strand, within MPMX20_00291 at 310.494 kb on + strand, within MPMX20_00291 at 310.494 kb on + strand, within MPMX20_00291 at 310.494 kb on + strand, within MPMX20_00291 at 310.502 kb on - strand, within MPMX20_00291 at 310.502 kb on - strand, within MPMX20_00291 at 310.659 kb on + strand, within MPMX20_00291 at 310.687 kb on - strand, within MPMX20_00291 at 310.722 kb on + strand, within MPMX20_00291 at 310.722 kb on + strand, within MPMX20_00291 at 310.732 kb on + strand, within MPMX20_00291 at 310.750 kb on + strand, within MPMX20_00291 at 310.750 kb on + strand, within MPMX20_00291 at 310.789 kb on - strand, within MPMX20_00291 at 310.883 kb on + strand, within MPMX20_00291 at 310.890 kb on + strand, within MPMX20_00291 at 311.032 kb on - strand, within MPMX20_00291 at 311.042 kb on - strand, within MPMX20_00291 at 311.107 kb on - strand, within MPMX20_00291 at 311.284 kb on + strand, within MPMX20_00291 at 311.284 kb on + strand, within MPMX20_00291 at 311.365 kb on - strand, within MPMX20_00291 at 311.422 kb on + strand, within MPMX20_00291 at 311.453 kb on - strand, within MPMX20_00291 at 311.457 kb on - strand, within MPMX20_00291 at 311.468 kb on - strand, within MPMX20_00291 at 311.487 kb on + strand, within MPMX20_00291 at 311.487 kb on + strand, within MPMX20_00291 at 311.495 kb on - strand, within MPMX20_00291 at 311.495 kb on - strand, within MPMX20_00291 at 311.561 kb on - strand at 311.566 kb on + strand at 311.585 kb on + strand at 311.585 kb on + strand at 311.586 kb on + strand at 311.593 kb on - strand at 311.593 kb on - strand at 311.596 kb on + strand at 311.598 kb on + strand at 311.616 kb on - strand at 311.618 kb on + strand at 311.621 kb on - strand at 311.626 kb on - strand at 311.626 kb on - strand at 311.628 kb on + strand at 311.666 kb on - strand at 311.668 kb on - strand at 311.670 kb on + strand at 311.678 kb on - strand at 311.678 kb on - strand at 311.678 kb on - strand at 311.719 kb on + strand at 311.739 kb on - strand at 311.760 kb on - strand at 311.856 kb on - strand at 311.965 kb on + strand at 312.005 kb on + strand at 312.068 kb on + strand at 312.083 kb on + strand at 312.177 kb on - strand at 312.182 kb on - strand at 312.191 kb on - strand at 312.196 kb on - strand at 312.203 kb on + strand at 312.211 kb on - strand at 312.211 kb on - strand at 312.211 kb on - strand at 312.211 kb on - strand at 312.211 kb on - strand at 312.211 kb on - strand at 312.211 kb on - strand at 312.211 kb on - strand at 312.211 kb on - strand at 312.211 kb on - strand at 312.223 kb on - strand at 312.227 kb on + strand at 312.279 kb on + strand at 312.279 kb on + strand at 312.282 kb on - strand at 312.287 kb on - strand at 312.287 kb on - strand at 312.287 kb on - strand at 312.349 kb on - strand, within MPMX20_00292 at 312.367 kb on + strand, within MPMX20_00292 at 312.385 kb on + strand, within MPMX20_00292 at 312.385 kb on + strand, within MPMX20_00292 at 312.473 kb on - strand, within MPMX20_00292 at 312.561 kb on - strand, within MPMX20_00292 at 312.561 kb on - strand, within MPMX20_00292 at 312.561 kb on - strand, within MPMX20_00292 at 312.576 kb on + strand, within MPMX20_00292 at 312.584 kb on - strand, within MPMX20_00292 at 312.631 kb on + strand, within MPMX20_00292 at 312.709 kb on + strand, within MPMX20_00292
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4 remove 308,790 - MPMX20_00289 0.63 -1.5 308,798 + MPMX20_00289 0.64 -0.3 308,820 - MPMX20_00289 0.65 -1.8 308,856 + MPMX20_00289 0.67 +1.7 308,917 - MPMX20_00289 0.71 -1.6 308,917 - MPMX20_00289 0.71 +0.3 308,928 + MPMX20_00289 0.72 -0.2 308,952 - MPMX20_00289 0.73 -1.1 308,952 - MPMX20_00289 0.73 -0.2 308,970 + MPMX20_00289 0.74 -1.0 308,970 + MPMX20_00289 0.74 -1.7 309,009 + MPMX20_00289 0.76 -1.1 309,058 + MPMX20_00289 0.79 -0.4 309,066 - MPMX20_00289 0.80 -1.8 309,099 - MPMX20_00289 0.82 -0.5 309,104 + MPMX20_00289 0.82 -1.2 309,104 + MPMX20_00289 0.82 -0.9 309,104 + MPMX20_00289 0.82 -0.6 309,104 + MPMX20_00289 0.82 -0.5 309,111 - MPMX20_00289 0.83 -1.7 309,111 - MPMX20_00289 0.83 -1.4 309,112 - MPMX20_00289 0.83 +0.3 309,112 - MPMX20_00289 0.83 -0.8 309,112 - MPMX20_00289 0.83 +0.7 309,112 - MPMX20_00289 0.83 -0.6 309,112 - MPMX20_00289 0.83 -1.6 309,203 + MPMX20_00289 0.88 -0.7 309,203 + MPMX20_00289 0.88 -1.5 309,213 + MPMX20_00289 0.89 -1.6 309,256 - +1.1 309,258 - +0.3 309,318 + -0.4 309,371 - -0.6 309,389 - -2.7 309,408 - -1.1 309,411 + -0.4 309,421 + -0.6 309,429 - MPMX20_00290 0.11 -2.7 309,461 + MPMX20_00290 0.22 -1.9 309,479 - MPMX20_00290 0.27 -0.8 309,505 - MPMX20_00290 0.36 +0.7 309,561 + MPMX20_00290 0.53 -0.0 309,563 - MPMX20_00290 0.54 -1.8 309,574 - MPMX20_00290 0.57 -0.4 309,579 + MPMX20_00290 0.59 -0.3 309,584 + MPMX20_00290 0.61 -0.6 309,584 + MPMX20_00290 0.61 -1.1 309,584 + MPMX20_00290 0.61 -0.9 309,592 - MPMX20_00290 0.63 -0.8 309,592 - MPMX20_00290 0.63 -1.6 309,656 + MPMX20_00290 0.83 +0.3 309,665 + MPMX20_00290 0.86 -1.0 309,666 - MPMX20_00290 0.87 -2.2 309,678 + -2.0 309,713 - -0.9 309,713 - -2.0 309,754 + -0.3 309,762 - -0.9 309,799 - -1.8 309,799 - -2.5 309,799 - -2.2 309,845 - -1.8 309,851 - -2.0 309,862 - -2.7 309,901 + -1.7 309,937 + -4.7 309,949 - -2.6 309,949 - -1.9 309,954 - -1.5 310,010 - MPMX20_00291 0.12 -2.0 310,014 + MPMX20_00291 0.12 -0.6 310,014 + MPMX20_00291 0.12 -1.3 310,019 + MPMX20_00291 0.12 -2.2 310,022 - MPMX20_00291 0.12 -4.0 310,034 - MPMX20_00291 0.13 +0.1 310,174 + MPMX20_00291 0.20 -1.8 310,284 - MPMX20_00291 0.26 -2.2 310,289 - MPMX20_00291 0.26 -1.1 310,401 + MPMX20_00291 0.32 -1.8 310,401 + MPMX20_00291 0.32 -1.8 310,425 - MPMX20_00291 0.33 -3.9 310,425 - MPMX20_00291 0.33 -2.3 310,436 + MPMX20_00291 0.34 -0.9 310,436 + MPMX20_00291 0.34 -0.3 310,436 + MPMX20_00291 0.34 -1.2 310,436 + MPMX20_00291 0.34 +0.1 310,444 - MPMX20_00291 0.34 -1.7 310,458 + MPMX20_00291 0.35 -2.5 310,458 + MPMX20_00291 0.35 -2.1 310,458 + MPMX20_00291 0.35 -1.7 310,458 + MPMX20_00291 0.35 -3.9 310,466 - MPMX20_00291 0.35 -1.6 310,466 - MPMX20_00291 0.35 +0.1 310,466 - MPMX20_00291 0.35 -2.1 310,466 - MPMX20_00291 0.35 -3.5 310,478 - MPMX20_00291 0.36 -2.2 310,494 + MPMX20_00291 0.37 -1.5 310,494 + MPMX20_00291 0.37 -1.5 310,494 + MPMX20_00291 0.37 -2.6 310,494 + MPMX20_00291 0.37 -1.8 310,494 + MPMX20_00291 0.37 -1.9 310,502 - MPMX20_00291 0.37 -3.0 310,502 - MPMX20_00291 0.37 -1.1 310,659 + MPMX20_00291 0.45 -2.9 310,687 - MPMX20_00291 0.46 -0.9 310,722 + MPMX20_00291 0.48 +0.7 310,722 + MPMX20_00291 0.48 +0.7 310,732 + MPMX20_00291 0.49 -1.6 310,750 + MPMX20_00291 0.50 -1.5 310,750 + MPMX20_00291 0.50 -2.3 310,789 - MPMX20_00291 0.52 -0.9 310,883 + MPMX20_00291 0.56 -1.5 310,890 + MPMX20_00291 0.57 -3.2 311,032 - MPMX20_00291 0.64 -2.8 311,042 - MPMX20_00291 0.65 -2.1 311,107 - MPMX20_00291 0.68 +0.1 311,284 + MPMX20_00291 0.77 -0.9 311,284 + MPMX20_00291 0.77 -3.3 311,365 - MPMX20_00291 0.81 -0.3 311,422 + MPMX20_00291 0.84 +0.1 311,453 - MPMX20_00291 0.86 -0.3 311,457 - MPMX20_00291 0.86 -2.3 311,468 - MPMX20_00291 0.86 -0.3 311,487 + MPMX20_00291 0.87 -3.8 311,487 + MPMX20_00291 0.87 +0.0 311,495 - MPMX20_00291 0.88 -1.8 311,495 - MPMX20_00291 0.88 -1.3 311,561 - -1.2 311,566 + -1.9 311,585 + -0.5 311,585 + -3.0 311,586 + -3.1 311,593 - -2.5 311,593 - -1.1 311,596 + -3.8 311,598 + -0.3 311,616 - -2.3 311,618 + -1.4 311,621 - -1.8 311,626 - -3.0 311,626 - -3.0 311,628 + +2.7 311,666 - -1.7 311,668 - +0.7 311,670 + -2.9 311,678 - -1.5 311,678 - +1.7 311,678 - -2.4 311,719 + -4.0 311,739 - -0.9 311,760 - -1.7 311,856 - +3.7 311,965 + +1.1 312,005 + -0.4 312,068 + +0.8 312,083 + +0.2 312,177 - +0.5 312,182 - -0.9 312,191 - +0.5 312,196 - +0.1 312,203 + +0.4 312,211 - +0.0 312,211 - +0.4 312,211 - -0.3 312,211 - -1.3 312,211 - -0.7 312,211 - +0.3 312,211 - -0.2 312,211 - -0.1 312,211 - +0.4 312,211 - +1.6 312,223 - +0.5 312,227 + -0.9 312,279 + +0.2 312,279 + -0.2 312,282 - +1.2 312,287 - -0.2 312,287 - -0.4 312,287 - +2.0 312,349 - MPMX20_00292 0.14 -0.6 312,367 + MPMX20_00292 0.16 +1.7 312,385 + MPMX20_00292 0.17 +0.7 312,385 + MPMX20_00292 0.17 +1.0 312,473 - MPMX20_00292 0.24 -0.0 312,561 - MPMX20_00292 0.31 +0.6 312,561 - MPMX20_00292 0.31 +0.2 312,561 - MPMX20_00292 0.31 +0.2 312,576 + MPMX20_00292 0.32 +1.0 312,584 - MPMX20_00292 0.32 +2.0 312,631 + MPMX20_00292 0.36 +0.1 312,709 + MPMX20_00292 0.42 +1.7
Or see this region's nucleotide sequence