Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00232

Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00231 and MPMX20_00232 are separated by 31 nucleotidesMPMX20_00232 and MPMX20_00233 are separated by 88 nucleotides MPMX20_00231: MPMX20_00231 - Malate synthase A, at 242,515 to 244,116 _00231 MPMX20_00232: MPMX20_00232 - Isocitrate lyase, at 244,148 to 245,452 _00232 MPMX20_00233: MPMX20_00233 - Isocitrate dehydrogenase kinase/phosphatase, at 245,541 to 247,268 _00233 Position (kb) 244 245 246Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 243.161 kb on - strand, within MPMX20_00231at 243.165 kb on + strand, within MPMX20_00231at 243.247 kb on - strand, within MPMX20_00231at 243.277 kb on - strand, within MPMX20_00231at 243.280 kb on - strand, within MPMX20_00231at 243.314 kb on + strand, within MPMX20_00231at 243.330 kb on + strand, within MPMX20_00231at 243.333 kb on - strand, within MPMX20_00231at 243.353 kb on + strand, within MPMX20_00231at 243.371 kb on - strand, within MPMX20_00231at 243.419 kb on - strand, within MPMX20_00231at 243.424 kb on + strand, within MPMX20_00231at 243.454 kb on - strand, within MPMX20_00231at 243.459 kb on + strand, within MPMX20_00231at 243.459 kb on + strand, within MPMX20_00231at 243.459 kb on + strand, within MPMX20_00231at 243.558 kb on + strand, within MPMX20_00231at 243.566 kb on - strand, within MPMX20_00231at 243.740 kb on + strand, within MPMX20_00231at 243.752 kb on + strand, within MPMX20_00231at 243.798 kb on - strand, within MPMX20_00231at 243.825 kb on - strand, within MPMX20_00231at 243.830 kb on - strand, within MPMX20_00231at 243.854 kb on - strand, within MPMX20_00231at 243.926 kb on - strand, within MPMX20_00231at 244.138 kb on - strandat 244.139 kb on + strandat 244.195 kb on - strandat 244.233 kb on + strandat 244.278 kb on + strandat 244.286 kb on - strand, within MPMX20_00232at 244.296 kb on - strand, within MPMX20_00232at 244.313 kb on + strand, within MPMX20_00232at 244.321 kb on - strand, within MPMX20_00232at 244.445 kb on + strand, within MPMX20_00232at 244.464 kb on + strand, within MPMX20_00232at 244.496 kb on + strand, within MPMX20_00232at 244.541 kb on + strand, within MPMX20_00232at 244.554 kb on - strand, within MPMX20_00232at 244.563 kb on + strand, within MPMX20_00232at 244.576 kb on - strand, within MPMX20_00232at 244.636 kb on - strand, within MPMX20_00232at 244.636 kb on - strand, within MPMX20_00232at 244.650 kb on + strand, within MPMX20_00232at 244.650 kb on + strand, within MPMX20_00232at 244.650 kb on + strand, within MPMX20_00232at 244.658 kb on - strand, within MPMX20_00232at 244.658 kb on - strand, within MPMX20_00232at 244.757 kb on + strand, within MPMX20_00232at 244.798 kb on + strand, within MPMX20_00232at 244.798 kb on + strand, within MPMX20_00232at 244.840 kb on - strand, within MPMX20_00232at 244.841 kb on - strand, within MPMX20_00232at 244.856 kb on - strand, within MPMX20_00232at 244.865 kb on - strand, within MPMX20_00232at 244.894 kb on - strand, within MPMX20_00232at 244.900 kb on + strand, within MPMX20_00232at 244.920 kb on + strand, within MPMX20_00232at 244.930 kb on + strand, within MPMX20_00232at 244.936 kb on - strand, within MPMX20_00232at 244.968 kb on + strand, within MPMX20_00232at 244.976 kb on - strand, within MPMX20_00232at 244.988 kb on - strand, within MPMX20_00232at 244.997 kb on + strand, within MPMX20_00232at 244.997 kb on + strand, within MPMX20_00232at 245.005 kb on - strand, within MPMX20_00232at 245.055 kb on + strand, within MPMX20_00232at 245.090 kb on + strand, within MPMX20_00232at 245.098 kb on - strand, within MPMX20_00232at 245.098 kb on - strand, within MPMX20_00232at 245.098 kb on - strand, within MPMX20_00232at 245.098 kb on - strand, within MPMX20_00232at 245.098 kb on - strand, within MPMX20_00232at 245.098 kb on - strand, within MPMX20_00232at 245.242 kb on + strand, within MPMX20_00232at 245.260 kb on + strand, within MPMX20_00232at 245.260 kb on + strand, within MPMX20_00232at 245.260 kb on + strand, within MPMX20_00232at 245.260 kb on + strand, within MPMX20_00232at 245.268 kb on - strand, within MPMX20_00232at 245.268 kb on - strand, within MPMX20_00232at 245.324 kb on + strandat 245.331 kb on - strandat 245.347 kb on + strandat 245.353 kb on + strandat 245.354 kb on + strandat 245.354 kb on - strandat 245.385 kb on + strandat 245.389 kb on + strandat 245.441 kb on + strandat 245.449 kb on - strandat 245.449 kb on - strandat 245.454 kb on - strandat 245.454 kb on - strandat 245.454 kb on - strandat 245.454 kb on - strandat 245.454 kb on - strandat 245.456 kb on + strandat 245.516 kb on + strandat 245.516 kb on + strandat 245.600 kb on + strandat 245.619 kb on + strandat 245.649 kb on - strandat 245.673 kb on - strandat 245.704 kb on - strandat 245.778 kb on - strand, within MPMX20_00233at 245.871 kb on + strand, within MPMX20_00233at 245.890 kb on - strand, within MPMX20_00233at 246.061 kb on + strand, within MPMX20_00233at 246.068 kb on - strand, within MPMX20_00233at 246.102 kb on - strand, within MPMX20_00233at 246.118 kb on + strand, within MPMX20_00233at 246.194 kb on - strand, within MPMX20_00233at 246.240 kb on - strand, within MPMX20_00233at 246.268 kb on + strand, within MPMX20_00233at 246.307 kb on + strand, within MPMX20_00233at 246.334 kb on - strand, within MPMX20_00233at 246.344 kb on - strand, within MPMX20_00233at 246.379 kb on + strand, within MPMX20_00233at 246.389 kb on + strand, within MPMX20_00233at 246.392 kb on - strand, within MPMX20_00233at 246.392 kb on - strand, within MPMX20_00233at 246.395 kb on + strand, within MPMX20_00233at 246.396 kb on + strand, within MPMX20_00233at 246.397 kb on - strand, within MPMX20_00233at 246.404 kb on - strand, within MPMX20_00233at 246.441 kb on + strand, within MPMX20_00233

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4
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243,161 - MPMX20_00231 0.40 +1.1
243,165 + MPMX20_00231 0.41 -1.8
243,247 - MPMX20_00231 0.46 -0.6
243,277 - MPMX20_00231 0.48 -2.1
243,280 - MPMX20_00231 0.48 +0.9
243,314 + MPMX20_00231 0.50 -0.4
243,330 + MPMX20_00231 0.51 -1.6
243,333 - MPMX20_00231 0.51 -1.1
243,353 + MPMX20_00231 0.52 -0.7
243,371 - MPMX20_00231 0.53 +1.3
243,419 - MPMX20_00231 0.56 -0.1
243,424 + MPMX20_00231 0.57 -1.9
243,454 - MPMX20_00231 0.59 -1.8
243,459 + MPMX20_00231 0.59 -0.9
243,459 + MPMX20_00231 0.59 -0.5
243,459 + MPMX20_00231 0.59 -1.1
243,558 + MPMX20_00231 0.65 +0.1
243,566 - MPMX20_00231 0.66 +0.1
243,740 + MPMX20_00231 0.76 -1.1
243,752 + MPMX20_00231 0.77 -2.5
243,798 - MPMX20_00231 0.80 -0.5
243,825 - MPMX20_00231 0.82 -0.3
243,830 - MPMX20_00231 0.82 -1.4
243,854 - MPMX20_00231 0.84 -2.8
243,926 - MPMX20_00231 0.88 +0.2
244,138 - +0.5
244,139 + +0.6
244,195 - +0.5
244,233 + +0.1
244,278 + -0.4
244,286 - MPMX20_00232 0.11 +1.0
244,296 - MPMX20_00232 0.11 -0.9
244,313 + MPMX20_00232 0.13 -0.3
244,321 - MPMX20_00232 0.13 -0.3
244,445 + MPMX20_00232 0.23 +2.8
244,464 + MPMX20_00232 0.24 +1.0
244,496 + MPMX20_00232 0.27 +0.5
244,541 + MPMX20_00232 0.30 -0.4
244,554 - MPMX20_00232 0.31 +0.1
244,563 + MPMX20_00232 0.32 +0.9
244,576 - MPMX20_00232 0.33 +0.7
244,636 - MPMX20_00232 0.37 -0.8
244,636 - MPMX20_00232 0.37 -2.1
244,650 + MPMX20_00232 0.38 -1.0
244,650 + MPMX20_00232 0.38 +1.0
244,650 + MPMX20_00232 0.38 -0.4
244,658 - MPMX20_00232 0.39 +0.2
244,658 - MPMX20_00232 0.39 -3.2
244,757 + MPMX20_00232 0.47 -0.9
244,798 + MPMX20_00232 0.50 +1.1
244,798 + MPMX20_00232 0.50 -0.1
244,840 - MPMX20_00232 0.53 -0.6
244,841 - MPMX20_00232 0.53 +0.1
244,856 - MPMX20_00232 0.54 +0.0
244,865 - MPMX20_00232 0.55 +0.6
244,894 - MPMX20_00232 0.57 -0.6
244,900 + MPMX20_00232 0.58 -0.2
244,920 + MPMX20_00232 0.59 -0.9
244,930 + MPMX20_00232 0.60 +1.2
244,936 - MPMX20_00232 0.60 +0.2
244,968 + MPMX20_00232 0.63 -0.1
244,976 - MPMX20_00232 0.63 -1.0
244,988 - MPMX20_00232 0.64 -0.1
244,997 + MPMX20_00232 0.65 +0.1
244,997 + MPMX20_00232 0.65 +0.5
245,005 - MPMX20_00232 0.66 +0.7
245,055 + MPMX20_00232 0.70 -0.5
245,090 + MPMX20_00232 0.72 -1.2
245,098 - MPMX20_00232 0.73 +0.1
245,098 - MPMX20_00232 0.73 +0.6
245,098 - MPMX20_00232 0.73 +0.1
245,098 - MPMX20_00232 0.73 -0.3
245,098 - MPMX20_00232 0.73 -1.4
245,098 - MPMX20_00232 0.73 -0.4
245,242 + MPMX20_00232 0.84 +1.2
245,260 + MPMX20_00232 0.85 -0.2
245,260 + MPMX20_00232 0.85 +3.7
245,260 + MPMX20_00232 0.85 +0.4
245,260 + MPMX20_00232 0.85 +0.4
245,268 - MPMX20_00232 0.86 -0.2
245,268 - MPMX20_00232 0.86 -2.5
245,324 + +0.0
245,331 - -0.1
245,347 + +0.6
245,353 + -0.3
245,354 + -1.1
245,354 - -0.9
245,385 + -1.4
245,389 + -0.5
245,441 + -0.3
245,449 - -0.5
245,449 - +0.7
245,454 - -0.8
245,454 - +0.2
245,454 - +0.8
245,454 - +2.0
245,454 - +0.2
245,456 + -0.0
245,516 + -1.5
245,516 + +0.5
245,600 + +1.2
245,619 + -0.6
245,649 - -0.4
245,673 - -0.4
245,704 - +0.9
245,778 - MPMX20_00233 0.14 -1.6
245,871 + MPMX20_00233 0.19 +0.1
245,890 - MPMX20_00233 0.20 -0.3
246,061 + MPMX20_00233 0.30 +0.9
246,068 - MPMX20_00233 0.30 -0.7
246,102 - MPMX20_00233 0.32 -0.5
246,118 + MPMX20_00233 0.33 +0.2
246,194 - MPMX20_00233 0.38 -0.8
246,240 - MPMX20_00233 0.40 +1.0
246,268 + MPMX20_00233 0.42 +0.1
246,307 + MPMX20_00233 0.44 -0.8
246,334 - MPMX20_00233 0.46 -0.5
246,344 - MPMX20_00233 0.46 -0.1
246,379 + MPMX20_00233 0.48 -0.0
246,389 + MPMX20_00233 0.49 -0.6
246,392 - MPMX20_00233 0.49 +1.3
246,392 - MPMX20_00233 0.49 +1.7
246,395 + MPMX20_00233 0.49 -0.7
246,396 + MPMX20_00233 0.49 -0.1
246,397 - MPMX20_00233 0.50 -0.6
246,404 - MPMX20_00233 0.50 -1.4
246,441 + MPMX20_00233 0.52 +1.3

Or see this region's nucleotide sequence