Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00216

Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00213 and MPMX20_00214 are separated by 1 nucleotidesMPMX20_00214 and MPMX20_00215 overlap by 17 nucleotidesMPMX20_00215 and MPMX20_00216 overlap by 8 nucleotidesMPMX20_00216 and MPMX20_00217 overlap by 1 nucleotides MPMX20_00213: MPMX20_00213 - Thiazole synthase, at 223,332 to 224,102 _00213 MPMX20_00214: MPMX20_00214 - Sulfur carrier protein ThiS, at 224,104 to 224,304 _00214 MPMX20_00215: MPMX20_00215 - Sulfur carrier protein ThiS adenylyltransferase, at 224,288 to 225,043 _00215 MPMX20_00216: MPMX20_00216 - Thiamine-phosphate synthase, at 225,036 to 225,671 _00216 MPMX20_00217: MPMX20_00217 - Phosphomethylpyrimidine synthase, at 225,671 to 227,566 _00217 Position (kb) 225 226Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 224.043 kb on + strandat 224.100 kb on + strandat 224.133 kb on + strand, within MPMX20_00214at 224.163 kb on - strand, within MPMX20_00214at 224.164 kb on - strand, within MPMX20_00214at 224.173 kb on - strand, within MPMX20_00214at 224.255 kb on - strand, within MPMX20_00214at 224.261 kb on - strand, within MPMX20_00214at 224.278 kb on - strand, within MPMX20_00214at 224.285 kb on + strandat 224.293 kb on - strandat 224.339 kb on + strandat 224.347 kb on - strandat 224.407 kb on + strand, within MPMX20_00215at 224.407 kb on + strand, within MPMX20_00215at 224.420 kb on - strand, within MPMX20_00215at 224.446 kb on + strand, within MPMX20_00215at 224.456 kb on - strand, within MPMX20_00215at 224.495 kb on + strand, within MPMX20_00215at 224.509 kb on - strand, within MPMX20_00215at 224.672 kb on + strand, within MPMX20_00215at 224.672 kb on + strand, within MPMX20_00215at 224.672 kb on + strand, within MPMX20_00215at 224.672 kb on + strand, within MPMX20_00215at 224.672 kb on + strand, within MPMX20_00215at 224.672 kb on + strand, within MPMX20_00215at 224.672 kb on + strand, within MPMX20_00215at 224.672 kb on + strand, within MPMX20_00215at 224.680 kb on - strand, within MPMX20_00215at 224.680 kb on - strand, within MPMX20_00215at 224.680 kb on - strand, within MPMX20_00215at 224.680 kb on - strand, within MPMX20_00215at 224.680 kb on - strand, within MPMX20_00215at 224.690 kb on - strand, within MPMX20_00215at 224.691 kb on - strand, within MPMX20_00215at 224.695 kb on - strand, within MPMX20_00215at 224.718 kb on + strand, within MPMX20_00215at 224.875 kb on + strand, within MPMX20_00215at 224.883 kb on - strand, within MPMX20_00215at 224.885 kb on + strand, within MPMX20_00215at 224.890 kb on + strand, within MPMX20_00215at 224.890 kb on + strand, within MPMX20_00215at 224.898 kb on - strand, within MPMX20_00215at 224.901 kb on + strand, within MPMX20_00215at 225.082 kb on + strandat 225.122 kb on - strand, within MPMX20_00216at 225.159 kb on - strand, within MPMX20_00216at 225.200 kb on + strand, within MPMX20_00216at 225.200 kb on + strand, within MPMX20_00216at 225.253 kb on - strand, within MPMX20_00216at 225.274 kb on + strand, within MPMX20_00216at 225.317 kb on + strand, within MPMX20_00216at 225.353 kb on - strand, within MPMX20_00216at 225.382 kb on + strand, within MPMX20_00216at 225.389 kb on + strand, within MPMX20_00216at 225.408 kb on + strand, within MPMX20_00216at 225.427 kb on + strand, within MPMX20_00216at 225.427 kb on + strand, within MPMX20_00216at 225.427 kb on - strand, within MPMX20_00216at 225.435 kb on - strand, within MPMX20_00216at 225.481 kb on + strand, within MPMX20_00216at 225.481 kb on + strand, within MPMX20_00216at 225.489 kb on - strand, within MPMX20_00216at 225.522 kb on + strand, within MPMX20_00216at 225.523 kb on + strand, within MPMX20_00216at 225.531 kb on - strand, within MPMX20_00216at 225.568 kb on - strand, within MPMX20_00216at 225.570 kb on + strand, within MPMX20_00216at 225.570 kb on + strand, within MPMX20_00216at 225.580 kb on + strand, within MPMX20_00216at 225.588 kb on - strand, within MPMX20_00216at 225.602 kb on + strand, within MPMX20_00216at 225.610 kb on - strandat 225.612 kb on + strandat 225.612 kb on + strandat 225.620 kb on - strandat 225.669 kb on - strandat 225.745 kb on + strandat 225.745 kb on + strandat 225.753 kb on - strandat 225.753 kb on - strandat 225.753 kb on - strandat 225.770 kb on + strandat 225.770 kb on + strandat 225.770 kb on + strandat 225.778 kb on + strandat 225.778 kb on + strandat 225.778 kb on - strandat 225.778 kb on - strandat 225.786 kb on - strandat 225.786 kb on - strandat 225.786 kb on - strandat 225.786 kb on - strandat 225.878 kb on - strand, within MPMX20_00217at 225.878 kb on - strand, within MPMX20_00217at 226.033 kb on + strand, within MPMX20_00217at 226.036 kb on - strand, within MPMX20_00217at 226.077 kb on - strand, within MPMX20_00217at 226.086 kb on - strand, within MPMX20_00217at 226.088 kb on + strand, within MPMX20_00217at 226.093 kb on - strand, within MPMX20_00217at 226.136 kb on + strand, within MPMX20_00217at 226.142 kb on - strand, within MPMX20_00217at 226.153 kb on - strand, within MPMX20_00217at 226.153 kb on - strand, within MPMX20_00217at 226.153 kb on - strand, within MPMX20_00217at 226.177 kb on + strand, within MPMX20_00217at 226.185 kb on - strand, within MPMX20_00217at 226.191 kb on - strand, within MPMX20_00217at 226.210 kb on + strand, within MPMX20_00217at 226.267 kb on - strand, within MPMX20_00217at 226.302 kb on + strand, within MPMX20_00217at 226.368 kb on + strand, within MPMX20_00217at 226.368 kb on + strand, within MPMX20_00217at 226.442 kb on + strand, within MPMX20_00217at 226.501 kb on - strand, within MPMX20_00217at 226.513 kb on - strand, within MPMX20_00217at 226.575 kb on + strand, within MPMX20_00217at 226.583 kb on + strand, within MPMX20_00217at 226.583 kb on + strand, within MPMX20_00217at 226.590 kb on - strand, within MPMX20_00217at 226.591 kb on - strand, within MPMX20_00217at 226.591 kb on - strand, within MPMX20_00217at 226.592 kb on - strand, within MPMX20_00217at 226.635 kb on - strand, within MPMX20_00217

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4
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224,043 + +0.7
224,100 + -1.2
224,133 + MPMX20_00214 0.14 +0.1
224,163 - MPMX20_00214 0.29 -0.4
224,164 - MPMX20_00214 0.30 -0.5
224,173 - MPMX20_00214 0.34 -1.4
224,255 - MPMX20_00214 0.75 +0.9
224,261 - MPMX20_00214 0.78 -0.5
224,278 - MPMX20_00214 0.87 -0.3
224,285 + -2.7
224,293 - -1.2
224,339 + -0.9
224,347 - +0.6
224,407 + MPMX20_00215 0.16 -0.3
224,407 + MPMX20_00215 0.16 -1.0
224,420 - MPMX20_00215 0.17 +0.4
224,446 + MPMX20_00215 0.21 -1.1
224,456 - MPMX20_00215 0.22 -1.1
224,495 + MPMX20_00215 0.27 -0.5
224,509 - MPMX20_00215 0.29 -2.1
224,672 + MPMX20_00215 0.51 -0.6
224,672 + MPMX20_00215 0.51 -0.3
224,672 + MPMX20_00215 0.51 -0.9
224,672 + MPMX20_00215 0.51 -0.7
224,672 + MPMX20_00215 0.51 -0.3
224,672 + MPMX20_00215 0.51 -0.6
224,672 + MPMX20_00215 0.51 -0.7
224,672 + MPMX20_00215 0.51 +0.6
224,680 - MPMX20_00215 0.52 -0.8
224,680 - MPMX20_00215 0.52 -0.2
224,680 - MPMX20_00215 0.52 -0.4
224,680 - MPMX20_00215 0.52 +0.4
224,680 - MPMX20_00215 0.52 +1.4
224,690 - MPMX20_00215 0.53 -0.4
224,691 - MPMX20_00215 0.53 -1.3
224,695 - MPMX20_00215 0.54 -2.0
224,718 + MPMX20_00215 0.57 -0.7
224,875 + MPMX20_00215 0.78 -1.2
224,883 - MPMX20_00215 0.79 -0.3
224,885 + MPMX20_00215 0.79 -1.2
224,890 + MPMX20_00215 0.80 -0.3
224,890 + MPMX20_00215 0.80 -0.9
224,898 - MPMX20_00215 0.81 -0.5
224,901 + MPMX20_00215 0.81 -0.3
225,082 + -2.5
225,122 - MPMX20_00216 0.14 +2.6
225,159 - MPMX20_00216 0.19 -3.6
225,200 + MPMX20_00216 0.26 -1.2
225,200 + MPMX20_00216 0.26 -0.9
225,253 - MPMX20_00216 0.34 -1.2
225,274 + MPMX20_00216 0.37 -3.0
225,317 + MPMX20_00216 0.44 -2.7
225,353 - MPMX20_00216 0.50 -3.0
225,382 + MPMX20_00216 0.54 -2.1
225,389 + MPMX20_00216 0.56 -2.2
225,408 + MPMX20_00216 0.58 -2.2
225,427 + MPMX20_00216 0.61 -1.0
225,427 + MPMX20_00216 0.61 -2.7
225,427 - MPMX20_00216 0.61 -1.1
225,435 - MPMX20_00216 0.63 -0.3
225,481 + MPMX20_00216 0.70 -2.1
225,481 + MPMX20_00216 0.70 -2.6
225,489 - MPMX20_00216 0.71 -1.8
225,522 + MPMX20_00216 0.76 -1.3
225,523 + MPMX20_00216 0.77 -4.3
225,531 - MPMX20_00216 0.78 -1.6
225,568 - MPMX20_00216 0.84 -2.0
225,570 + MPMX20_00216 0.84 -3.1
225,570 + MPMX20_00216 0.84 -0.3
225,580 + MPMX20_00216 0.86 -2.2
225,588 - MPMX20_00216 0.87 -0.9
225,602 + MPMX20_00216 0.89 -2.3
225,610 - -1.1
225,612 + -2.8
225,612 + -1.7
225,620 - -0.9
225,669 - -2.3
225,745 + -3.0
225,745 + -0.6
225,753 - -0.4
225,753 - +0.9
225,753 - -1.3
225,770 + +1.1
225,770 + -1.5
225,770 + -2.2
225,778 + -1.0
225,778 + -0.5
225,778 - +0.4
225,778 - -0.2
225,786 - -0.9
225,786 - -1.3
225,786 - -0.9
225,786 - -1.4
225,878 - MPMX20_00217 0.11 -0.1
225,878 - MPMX20_00217 0.11 -1.1
226,033 + MPMX20_00217 0.19 -1.4
226,036 - MPMX20_00217 0.19 -0.5
226,077 - MPMX20_00217 0.21 +0.7
226,086 - MPMX20_00217 0.22 +1.7
226,088 + MPMX20_00217 0.22 +1.1
226,093 - MPMX20_00217 0.22 -0.9
226,136 + MPMX20_00217 0.25 -1.3
226,142 - MPMX20_00217 0.25 -1.9
226,153 - MPMX20_00217 0.25 -2.5
226,153 - MPMX20_00217 0.25 -0.9
226,153 - MPMX20_00217 0.25 -0.3
226,177 + MPMX20_00217 0.27 -0.9
226,185 - MPMX20_00217 0.27 -0.6
226,191 - MPMX20_00217 0.27 -1.6
226,210 + MPMX20_00217 0.28 -0.9
226,267 - MPMX20_00217 0.31 -0.3
226,302 + MPMX20_00217 0.33 +0.7
226,368 + MPMX20_00217 0.37 -0.6
226,368 + MPMX20_00217 0.37 -2.0
226,442 + MPMX20_00217 0.41 -1.2
226,501 - MPMX20_00217 0.44 -1.0
226,513 - MPMX20_00217 0.44 -0.7
226,575 + MPMX20_00217 0.48 -1.9
226,583 + MPMX20_00217 0.48 +0.7
226,583 + MPMX20_00217 0.48 -1.3
226,590 - MPMX20_00217 0.48 -1.0
226,591 - MPMX20_00217 0.49 -1.5
226,591 - MPMX20_00217 0.49 +0.1
226,592 - MPMX20_00217 0.49 +1.7
226,635 - MPMX20_00217 0.51 -2.1

Or see this region's nucleotide sequence