Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00083

Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00082 and MPMX20_00083 are separated by 225 nucleotidesMPMX20_00083 and MPMX20_00084 are separated by 2 nucleotides MPMX20_00082: MPMX20_00082 - Xanthine permease XanP, at 83,135 to 84,526 _00082 MPMX20_00083: MPMX20_00083 - Sodium/glutamate symporter, at 84,752 to 85,954 _00083 MPMX20_00084: MPMX20_00084 - ATP-dependent DNA helicase RecG, at 85,957 to 88,038 _00084 Position (kb) 84 85 86Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 83.775 kb on + strand, within MPMX20_00082at 83.775 kb on + strand, within MPMX20_00082at 83.775 kb on + strand, within MPMX20_00082at 83.783 kb on - strand, within MPMX20_00082at 83.783 kb on - strand, within MPMX20_00082at 83.814 kb on + strand, within MPMX20_00082at 83.814 kb on + strand, within MPMX20_00082at 83.990 kb on + strand, within MPMX20_00082at 83.990 kb on + strand, within MPMX20_00082at 84.024 kb on - strand, within MPMX20_00082at 84.074 kb on + strand, within MPMX20_00082at 84.087 kb on - strand, within MPMX20_00082at 84.183 kb on - strand, within MPMX20_00082at 84.194 kb on - strand, within MPMX20_00082at 84.238 kb on + strand, within MPMX20_00082at 84.246 kb on - strand, within MPMX20_00082at 84.320 kb on - strand, within MPMX20_00082at 84.326 kb on + strand, within MPMX20_00082at 84.334 kb on - strand, within MPMX20_00082at 84.505 kb on + strandat 84.698 kb on - strandat 84.705 kb on + strandat 84.705 kb on + strandat 84.705 kb on + strandat 84.713 kb on - strandat 84.713 kb on - strandat 84.729 kb on - strandat 84.818 kb on + strandat 84.818 kb on - strandat 84.826 kb on - strandat 84.826 kb on - strandat 84.866 kb on + strandat 84.887 kb on + strand, within MPMX20_00083at 84.981 kb on + strand, within MPMX20_00083at 84.981 kb on + strand, within MPMX20_00083at 84.989 kb on - strand, within MPMX20_00083at 84.989 kb on - strand, within MPMX20_00083at 85.028 kb on + strand, within MPMX20_00083at 85.043 kb on - strand, within MPMX20_00083at 85.043 kb on - strand, within MPMX20_00083at 85.186 kb on - strand, within MPMX20_00083at 85.189 kb on + strand, within MPMX20_00083at 85.237 kb on + strand, within MPMX20_00083at 85.237 kb on + strand, within MPMX20_00083at 85.259 kb on + strand, within MPMX20_00083at 85.262 kb on - strand, within MPMX20_00083at 85.381 kb on + strand, within MPMX20_00083at 85.381 kb on + strand, within MPMX20_00083at 85.439 kb on - strand, within MPMX20_00083at 85.441 kb on + strand, within MPMX20_00083at 85.486 kb on + strand, within MPMX20_00083at 85.490 kb on + strand, within MPMX20_00083at 85.624 kb on + strand, within MPMX20_00083at 85.629 kb on + strand, within MPMX20_00083at 85.656 kb on - strand, within MPMX20_00083at 85.696 kb on + strand, within MPMX20_00083at 85.713 kb on - strand, within MPMX20_00083at 85.787 kb on + strand, within MPMX20_00083at 85.879 kb on - strandat 85.931 kb on - strandat 86.024 kb on - strandat 86.024 kb on - strandat 86.024 kb on - strandat 86.316 kb on + strand, within MPMX20_00084at 86.372 kb on - strand, within MPMX20_00084at 86.461 kb on - strand, within MPMX20_00084at 86.477 kb on + strand, within MPMX20_00084at 86.525 kb on + strand, within MPMX20_00084at 86.547 kb on + strand, within MPMX20_00084at 86.555 kb on - strand, within MPMX20_00084at 86.584 kb on - strand, within MPMX20_00084at 86.584 kb on - strand, within MPMX20_00084at 86.654 kb on - strand, within MPMX20_00084at 86.670 kb on + strand, within MPMX20_00084at 86.738 kb on - strand, within MPMX20_00084at 86.753 kb on - strand, within MPMX20_00084at 86.798 kb on - strand, within MPMX20_00084at 86.831 kb on - strand, within MPMX20_00084at 86.839 kb on + strand, within MPMX20_00084at 86.880 kb on + strand, within MPMX20_00084at 86.949 kb on + strand, within MPMX20_00084

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4
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83,775 + MPMX20_00082 0.46 +0.3
83,775 + MPMX20_00082 0.46 -1.7
83,775 + MPMX20_00082 0.46 -0.2
83,783 - MPMX20_00082 0.47 -0.3
83,783 - MPMX20_00082 0.47 -0.6
83,814 + MPMX20_00082 0.49 -0.3
83,814 + MPMX20_00082 0.49 +0.0
83,990 + MPMX20_00082 0.61 -0.2
83,990 + MPMX20_00082 0.61 +0.9
84,024 - MPMX20_00082 0.64 -0.8
84,074 + MPMX20_00082 0.67 +0.3
84,087 - MPMX20_00082 0.68 -0.5
84,183 - MPMX20_00082 0.75 +0.4
84,194 - MPMX20_00082 0.76 +0.0
84,238 + MPMX20_00082 0.79 -1.0
84,246 - MPMX20_00082 0.80 +0.9
84,320 - MPMX20_00082 0.85 -0.6
84,326 + MPMX20_00082 0.86 +0.1
84,334 - MPMX20_00082 0.86 -1.4
84,505 + +0.9
84,698 - -2.4
84,705 + -0.5
84,705 + +0.1
84,705 + +0.7
84,713 - +0.9
84,713 - +0.2
84,729 - +1.7
84,818 + +0.3
84,818 - +4.5
84,826 - +0.7
84,826 - +0.4
84,866 + -1.4
84,887 + MPMX20_00083 0.11 +0.4
84,981 + MPMX20_00083 0.19 -0.8
84,981 + MPMX20_00083 0.19 -1.2
84,989 - MPMX20_00083 0.20 -1.1
84,989 - MPMX20_00083 0.20 -1.3
85,028 + MPMX20_00083 0.23 +1.1
85,043 - MPMX20_00083 0.24 -1.2
85,043 - MPMX20_00083 0.24 +0.3
85,186 - MPMX20_00083 0.36 +0.7
85,189 + MPMX20_00083 0.36 +0.5
85,237 + MPMX20_00083 0.40 +0.1
85,237 + MPMX20_00083 0.40 +0.3
85,259 + MPMX20_00083 0.42 +0.3
85,262 - MPMX20_00083 0.42 +1.7
85,381 + MPMX20_00083 0.52 -0.3
85,381 + MPMX20_00083 0.52 -0.9
85,439 - MPMX20_00083 0.57 -0.7
85,441 + MPMX20_00083 0.57 +1.1
85,486 + MPMX20_00083 0.61 +0.3
85,490 + MPMX20_00083 0.61 -1.3
85,624 + MPMX20_00083 0.72 +0.5
85,629 + MPMX20_00083 0.73 -0.5
85,656 - MPMX20_00083 0.75 -0.3
85,696 + MPMX20_00083 0.78 +0.7
85,713 - MPMX20_00083 0.80 +0.3
85,787 + MPMX20_00083 0.86 -0.7
85,879 - -0.3
85,931 - -1.5
86,024 - -2.9
86,024 - -0.7
86,024 - -3.2
86,316 + MPMX20_00084 0.17 -3.0
86,372 - MPMX20_00084 0.20 -1.3
86,461 - MPMX20_00084 0.24 -1.6
86,477 + MPMX20_00084 0.25 -2.4
86,525 + MPMX20_00084 0.27 +0.7
86,547 + MPMX20_00084 0.28 -2.5
86,555 - MPMX20_00084 0.29 -1.9
86,584 - MPMX20_00084 0.30 -1.9
86,584 - MPMX20_00084 0.30 -2.3
86,654 - MPMX20_00084 0.33 +0.1
86,670 + MPMX20_00084 0.34 -0.3
86,738 - MPMX20_00084 0.38 -1.4
86,753 - MPMX20_00084 0.38 -1.3
86,798 - MPMX20_00084 0.40 -1.8
86,831 - MPMX20_00084 0.42 -1.4
86,839 + MPMX20_00084 0.42 -1.2
86,880 + MPMX20_00084 0.44 -2.8
86,949 + MPMX20_00084 0.48 -0.9

Or see this region's nucleotide sequence