Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_020415

Experiment: PM with argon and butyrate 10 mM and Sodium bicarbonate 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with argon and butyrate 10 mM and Sodium bicarbonate 10 mM
4,449,963	-		TX73_020405	0.80	+1.5
4,449,963	-		TX73_020405	0.80	-0.1
4,449,999	+		TX73_020405	0.83	+0.1
4,449,999	+		TX73_020405	0.83	+1.5
4,450,000	+		TX73_020405	0.83	-2.0
4,450,000	+		TX73_020405	0.83	-0.5
4,450,006	-		TX73_020405	0.83	-0.9
4,450,010	+		TX73_020405	0.84	+0.7
4,450,012	-		TX73_020405	0.84	-1.6
4,450,060	+		TX73_020405	0.87	-1.1
4,450,078	-		TX73_020405	0.88	+0.2
4,450,088	-		TX73_020405	0.89	+0.7
4,450,094	-		TX73_020405	0.89	-0.1
4,450,116	-				+0.3
4,450,124	+				-0.3
4,450,145	+				-1.1
4,450,153	-				+0.5
4,450,153	-				-0.1
4,450,164	+				-0.3
4,450,165	-				-0.5
4,450,172	-				+0.5
4,450,203	-				+0.6
4,450,254	+				-0.6
4,450,262	-				+1.7
4,450,314	+				-1.6
4,450,314	+				-0.9
4,450,323	+				-0.5
4,450,331	-				-0.1
4,450,351	+				+0.3
4,450,385	-				+1.4
4,450,403	-				+4.2
4,450,403	-				+4.8
4,450,421	+				+4.3
4,450,498	-		TX73_020410	0.21	+3.8
4,450,530	-		TX73_020410	0.27	+4.3
4,450,555	+		TX73_020410	0.31	+4.4
4,450,560	+		TX73_020410	0.32	+4.6
4,450,565	+		TX73_020410	0.33	+3.9
4,450,602	-		TX73_020410	0.40	+4.1
4,450,613	-		TX73_020410	0.42	+4.8
4,450,635	-		TX73_020410	0.47	+4.1
4,450,647	-		TX73_020410	0.49	+4.5
4,450,694	-		TX73_020410	0.58	+4.5
4,450,700	-		TX73_020410	0.59	+4.2
4,450,700	-		TX73_020410	0.59	+4.0
4,450,722	+		TX73_020410	0.63	+4.2
4,450,722	+		TX73_020410	0.63	+4.5
4,450,724	-		TX73_020410	0.63	+3.8
4,450,753	+		TX73_020410	0.69	+4.3
4,450,780	+		TX73_020410	0.74	+4.2
4,450,788	-		TX73_020410	0.75	+4.5
4,450,789	+		TX73_020410	0.76	+4.6
4,450,795	-		TX73_020410	0.77	+3.8
4,450,797	-		TX73_020410	0.77	+3.9
4,450,825	-		TX73_020410	0.82	+4.5
4,450,874	+				+3.9
4,450,899	-				+5.7
4,450,913	+				-0.3
4,450,921	-				+1.2
4,450,955	-				-0.2
4,450,994	+				+0.1
4,450,994	+				+0.2
4,450,994	+				+1.4
4,451,057	-		TX73_020415	0.22	-0.7
4,451,150	+		TX73_020415	0.44	+0.1
4,451,158	-		TX73_020415	0.45	-0.1
4,451,165	+		TX73_020415	0.47	-0.4
4,451,165	+		TX73_020415	0.47	-0.3
4,451,173	-		TX73_020415	0.49	-0.2
4,451,213	-		TX73_020415	0.58	-1.4
4,451,215	+		TX73_020415	0.59	+0.2
4,451,215	+		TX73_020415	0.59	+0.2
4,451,215	+		TX73_020415	0.59	-1.2
4,451,215	+		TX73_020415	0.59	+0.1
4,451,223	-		TX73_020415	0.60	+0.8
4,451,223	-		TX73_020415	0.60	+1.0
4,451,238	-		TX73_020415	0.64	-0.5
4,451,264	+		TX73_020415	0.70	-0.6
4,451,272	-		TX73_020415	0.72	+1.3
4,451,274	+		TX73_020415	0.72	-0.9
4,451,283	+		TX73_020415	0.74	+0.2
4,451,288	-		TX73_020415	0.75	-0.5
4,451,367	+				-0.3
4,451,381	+				+0.2
4,451,388	+				+0.3
4,451,389	-				-1.0
4,451,391	-				-1.2
4,451,394	-				+1.4
4,451,401	-				+1.2
4,451,403	+				-0.0
4,451,403	+				-0.0
4,451,403	+				-0.9
4,451,410	+				-0.3
4,451,411	-				+0.6
4,451,413	+				+0.7
4,451,413	+				-0.3
4,451,418	-				+0.1
4,451,418	-				-0.4
4,451,421	-				+0.1
4,451,421	-				+0.2
4,451,442	+				-0.4
4,451,449	+				+0.5
4,451,456	-				-0.0
4,451,457	-				-1.9
4,451,457	-				+0.2
4,451,457	-				-0.5
4,451,507	+		TX73_020420	0.15	-0.2
4,451,518	+		TX73_020420	0.16	-1.2
4,451,518	+		TX73_020420	0.16	+0.4
4,451,526	-		TX73_020420	0.18	-0.3
4,451,526	-		TX73_020420	0.18	-0.0
4,451,526	-		TX73_020420	0.18	+0.8
4,451,537	+		TX73_020420	0.19	+0.3
4,451,557	-		TX73_020420	0.23	-0.9
4,451,568	-		TX73_020420	0.24	-0.2
4,451,569	+		TX73_020420	0.24	-0.4
4,451,572	-		TX73_020420	0.25	-0.7
4,451,574	+		TX73_020420	0.25	+0.1
4,451,584	+		TX73_020420	0.27	+0.3
4,451,676	-		TX73_020420	0.41	-0.9
4,451,710	+		TX73_020420	0.47	+0.3
4,451,712	-		TX73_020420	0.47	-0.5
4,451,744	+		TX73_020420	0.52	+0.6
4,451,749	+		TX73_020420	0.53	+0.2
4,451,761	+		TX73_020420	0.55	+0.1
4,451,761	+		TX73_020420	0.55	+0.9
4,451,792	-		TX73_020420	0.60	+0.7
4,451,821	+		TX73_020420	0.64	+0.7
4,451,846	-		TX73_020420	0.68	-0.7
4,451,848	-		TX73_020420	0.69	+0.7
4,451,865	+		TX73_020420	0.71	+0.2
4,451,865	+		TX73_020420	0.71	+1.1
4,451,865	+		TX73_020420	0.71	+0.1
4,451,869	-		TX73_020420	0.72	+1.1
4,451,873	-		TX73_020420	0.73	-1.2
4,451,873	-		TX73_020420	0.73	+1.1
4,451,875	-		TX73_020420	0.73	+0.4
4,451,916	-		TX73_020420	0.80	-0.2
4,451,939	-		TX73_020420	0.83	+0.1
4,451,950	+		TX73_020420	0.85	-0.2
4,451,950	+		TX73_020420	0.85	-0.1
4,451,958	+		TX73_020420	0.86	+0.2
4,451,958	+		TX73_020420	0.86	+0.1
4,451,958	+		TX73_020420	0.86	+0.1
4,451,958	+		TX73_020420	0.86	+0.6
4,451,958	-		TX73_020420	0.86	-0.3
4,451,959	+		TX73_020420	0.86	+0.1
4,451,962	-		TX73_020420	0.87	+0.9
4,451,964	+		TX73_020420	0.87	+0.0
4,451,966	-		TX73_020420	0.87	-0.3
4,451,966	-		TX73_020420	0.87	+0.1
4,451,966	-		TX73_020420	0.87	-0.3
4,451,966	-		TX73_020420	0.87	-0.4
4,451,966	-		TX73_020420	0.87	+0.4
4,451,966	-		TX73_020420	0.87	-0.2
4,451,966	-		TX73_020420	0.87	-1.3
4,451,966	-		TX73_020420	0.87	-0.2
4,451,966	-		TX73_020420	0.87	-0.1
4,451,966	-		TX73_020420	0.87	-0.6
4,451,966	-		TX73_020420	0.87	-0.8
4,451,966	-		TX73_020420	0.87	-0.3
4,451,966	-		TX73_020420	0.87	+0.8
4,451,967	-		TX73_020420	0.88	-0.3
4,451,985	+				-0.3
4,451,993	+				-0.7
4,452,011	+				-0.2
4,452,020	+				+0.8
4,452,028	-				+0.2
4,452,031	+				-1.0
4,452,039	+				-1.9
4,452,052	-				-0.4
4,452,053	-				-0.5
4,452,094	-				+0.2
4,452,099	-				+0.1
4,452,100	+				+0.8
4,452,101	+				+0.2
4,452,134	-				-0.0
4,452,134	-				-0.4
4,452,151	+				-0.4
4,452,159	-				-0.3
4,452,162	+				+0.3
4,452,176	-				+0.5
4,452,202	-				+0.1
4,452,202	-				-0.6
4,452,218	+		TX73_020425	0.13	+0.5
4,452,228	+		TX73_020425	0.15	+0.0
4,452,244	-		TX73_020425	0.19	+0.7
4,452,246	+		TX73_020425	0.20	-0.3
4,452,251	+		TX73_020425	0.21	-0.0
4,452,251	+		TX73_020425	0.21	-1.0
4,452,254	-		TX73_020425	0.21	-0.7
4,452,254	-		TX73_020425	0.21	+0.0
4,452,254	-		TX73_020425	0.21	+0.5
4,452,254	-		TX73_020425	0.21	+0.1
4,452,263	+		TX73_020425	0.23	-0.7
4,452,273	-		TX73_020425	0.26	-0.2
4,452,283	+		TX73_020425	0.28	-0.3
4,452,283	+		TX73_020425	0.28	+0.5
4,452,336	-		TX73_020425	0.40	-0.3
4,452,341	-		TX73_020425	0.41	+0.6
4,452,341	-		TX73_020425	0.41	-0.4