Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_015080

Experiment: PM with argon and butyrate 10 mM and Sodium bicarbonate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_015075 and TX73_015080 overlap by 4 nucleotidesTX73_015080 and TX73_015085 are separated by 18 nucleotidesTX73_015085 and TX73_015090 are separated by 8 nucleotides TX73_015075: TX73_015075 - lipid-A-disaccharide synthase, at 3,288,405 to 3,289,586 _015075 TX73_015080: TX73_015080 - UDP-2,3-diacylglucosamine diphosphatase LpxI, at 3,289,583 to 3,290,440 _015080 TX73_015085: TX73_015085 - acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase, at 3,290,459 to 3,291,301 _015085 TX73_015090: TX73_015090 - 3-hydroxyacyl-ACP dehydratase FabZ, at 3,291,310 to 3,291,765 _015090 Position (kb) 3289 3290 3291Strain fitness (log2 ratio) -2 -1 0 1at 3289.568 kb on - strandat 3289.588 kb on + strandat 3290.435 kb on + strandat 3290.435 kb on + strandat 3290.435 kb on + strandat 3290.435 kb on + strandat 3290.435 kb on + strandat 3290.443 kb on - strandat 3290.444 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PM with argon and butyrate 10 mM and Sodium bicarbonate 10 mM
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3,289,568 - -0.1
3,289,588 + +1.0
3,290,435 + -2.0
3,290,435 + -0.4
3,290,435 + -0.2
3,290,435 + -0.4
3,290,435 + +0.0
3,290,443 - -0.1
3,290,444 - -0.2

Or see this region's nucleotide sequence