Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_003950

Experiment: PM with argon and butyrate 10 mM and Sodium bicarbonate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_003940 and TX73_003945 are separated by 55 nucleotidesTX73_003945 and TX73_003950 are separated by 20 nucleotidesTX73_003950 and TX73_003955 are separated by 396 nucleotides TX73_003940: TX73_003940 - class I SAM-dependent methyltransferase, at 845,818 to 846,435 _003940 TX73_003945: TX73_003945 - EF-hand domain-containing protein, at 846,491 to 846,925 _003945 TX73_003950: TX73_003950 - TonB-dependent receptor, at 846,946 to 849,309 _003950 TX73_003955: TX73_003955 - Crp/Fnr family transcriptional regulator, at 849,706 to 850,410 _003955 Position (kb) 846 847 848 849 850Strain fitness (log2 ratio) -2 -1 0 1 2at 846.102 kb on + strand, within TX73_003940at 846.117 kb on + strand, within TX73_003940at 846.178 kb on - strand, within TX73_003940at 846.187 kb on + strand, within TX73_003940at 846.198 kb on + strand, within TX73_003940at 846.206 kb on - strand, within TX73_003940at 846.222 kb on + strand, within TX73_003940at 846.251 kb on + strand, within TX73_003940at 846.269 kb on - strand, within TX73_003940at 846.283 kb on - strand, within TX73_003940at 846.333 kb on + strand, within TX73_003940at 846.374 kb on - strandat 846.502 kb on + strandat 846.553 kb on + strand, within TX73_003945at 846.586 kb on + strand, within TX73_003945at 846.586 kb on + strand, within TX73_003945at 846.622 kb on + strand, within TX73_003945at 846.630 kb on - strand, within TX73_003945at 846.661 kb on + strand, within TX73_003945at 846.674 kb on - strand, within TX73_003945at 846.674 kb on - strand, within TX73_003945at 846.699 kb on + strand, within TX73_003945at 846.710 kb on + strand, within TX73_003945at 846.718 kb on - strand, within TX73_003945at 846.837 kb on - strand, within TX73_003945at 846.855 kb on - strand, within TX73_003945at 846.994 kb on - strandat 847.125 kb on - strandat 847.129 kb on - strandat 847.131 kb on - strandat 847.131 kb on - strandat 847.209 kb on - strand, within TX73_003950at 847.209 kb on - strand, within TX73_003950at 847.219 kb on - strand, within TX73_003950at 847.278 kb on - strand, within TX73_003950at 847.332 kb on - strand, within TX73_003950at 847.346 kb on - strand, within TX73_003950at 847.474 kb on + strand, within TX73_003950at 847.488 kb on + strand, within TX73_003950at 847.490 kb on + strand, within TX73_003950at 847.548 kb on + strand, within TX73_003950at 847.551 kb on - strand, within TX73_003950at 847.605 kb on - strand, within TX73_003950at 847.679 kb on - strand, within TX73_003950at 847.679 kb on - strand, within TX73_003950at 847.679 kb on - strand, within TX73_003950at 847.710 kb on - strand, within TX73_003950at 847.712 kb on + strand, within TX73_003950at 847.720 kb on - strand, within TX73_003950at 847.725 kb on - strand, within TX73_003950at 847.777 kb on + strand, within TX73_003950at 847.788 kb on + strand, within TX73_003950at 847.820 kb on - strand, within TX73_003950at 847.826 kb on + strand, within TX73_003950at 847.882 kb on + strand, within TX73_003950at 847.892 kb on + strand, within TX73_003950at 847.900 kb on - strand, within TX73_003950at 847.954 kb on + strand, within TX73_003950at 847.954 kb on + strand, within TX73_003950at 847.966 kb on - strand, within TX73_003950at 847.993 kb on - strand, within TX73_003950at 848.016 kb on + strand, within TX73_003950at 848.053 kb on + strand, within TX73_003950at 848.143 kb on + strand, within TX73_003950at 848.159 kb on - strand, within TX73_003950at 848.192 kb on + strand, within TX73_003950at 848.200 kb on - strand, within TX73_003950at 848.212 kb on + strand, within TX73_003950at 848.404 kb on + strand, within TX73_003950at 848.473 kb on - strand, within TX73_003950at 848.486 kb on - strand, within TX73_003950at 848.560 kb on - strand, within TX73_003950at 848.572 kb on + strand, within TX73_003950at 848.584 kb on + strand, within TX73_003950at 848.593 kb on - strand, within TX73_003950at 848.637 kb on + strand, within TX73_003950at 848.640 kb on - strand, within TX73_003950at 848.645 kb on - strand, within TX73_003950at 848.674 kb on + strand, within TX73_003950at 848.682 kb on - strand, within TX73_003950at 848.713 kb on + strand, within TX73_003950at 848.762 kb on + strand, within TX73_003950at 848.795 kb on + strand, within TX73_003950at 848.795 kb on + strand, within TX73_003950at 848.795 kb on + strand, within TX73_003950at 848.795 kb on + strand, within TX73_003950at 848.795 kb on + strand, within TX73_003950at 848.795 kb on + strand, within TX73_003950at 848.798 kb on + strand, within TX73_003950at 848.803 kb on - strand, within TX73_003950at 848.803 kb on - strand, within TX73_003950at 848.803 kb on - strand, within TX73_003950at 848.803 kb on - strand, within TX73_003950at 848.803 kb on - strand, within TX73_003950at 848.887 kb on + strand, within TX73_003950at 848.919 kb on + strand, within TX73_003950at 848.920 kb on - strand, within TX73_003950at 848.921 kb on + strand, within TX73_003950at 848.927 kb on - strand, within TX73_003950at 848.927 kb on - strand, within TX73_003950at 848.959 kb on - strand, within TX73_003950at 849.003 kb on - strand, within TX73_003950at 849.030 kb on - strand, within TX73_003950at 849.032 kb on + strand, within TX73_003950at 849.082 kb on - strandat 849.087 kb on - strandat 849.116 kb on + strandat 849.140 kb on + strandat 849.144 kb on + strandat 849.185 kb on + strandat 849.185 kb on + strandat 849.193 kb on - strandat 849.193 kb on - strandat 849.193 kb on - strandat 849.216 kb on - strandat 849.244 kb on + strandat 849.382 kb on + strandat 849.485 kb on + strandat 849.493 kb on - strandat 849.550 kb on + strandat 849.682 kb on - strandat 849.708 kb on + strandat 849.718 kb on + strandat 849.721 kb on - strandat 849.726 kb on - strandat 849.733 kb on + strandat 849.794 kb on + strand, within TX73_003955at 849.810 kb on + strand, within TX73_003955at 849.829 kb on + strand, within TX73_003955at 849.829 kb on + strand, within TX73_003955at 849.829 kb on - strand, within TX73_003955at 849.865 kb on - strand, within TX73_003955at 849.895 kb on - strand, within TX73_003955at 849.897 kb on + strand, within TX73_003955at 849.905 kb on - strand, within TX73_003955at 849.951 kb on + strand, within TX73_003955at 849.951 kb on + strand, within TX73_003955at 849.954 kb on - strand, within TX73_003955at 849.959 kb on - strand, within TX73_003955at 849.982 kb on + strand, within TX73_003955at 849.988 kb on + strand, within TX73_003955at 850.013 kb on + strand, within TX73_003955at 850.018 kb on + strand, within TX73_003955at 850.018 kb on + strand, within TX73_003955at 850.018 kb on + strand, within TX73_003955at 850.021 kb on - strand, within TX73_003955at 850.026 kb on - strand, within TX73_003955at 850.046 kb on - strand, within TX73_003955at 850.057 kb on + strand, within TX73_003955at 850.064 kb on + strand, within TX73_003955at 850.072 kb on - strand, within TX73_003955at 850.119 kb on + strand, within TX73_003955at 850.156 kb on + strand, within TX73_003955at 850.157 kb on - strand, within TX73_003955at 850.200 kb on - strand, within TX73_003955at 850.209 kb on - strand, within TX73_003955at 850.209 kb on - strand, within TX73_003955at 850.253 kb on + strand, within TX73_003955at 850.261 kb on - strand, within TX73_003955at 850.288 kb on - strand, within TX73_003955at 850.300 kb on - strand, within TX73_003955

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Per-strain Table

Position Strand Gene LocusTag Fraction PM with argon and butyrate 10 mM and Sodium bicarbonate 10 mM
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846,102 + TX73_003940 0.46 -0.4
846,117 + TX73_003940 0.48 +0.0
846,178 - TX73_003940 0.58 +0.9
846,187 + TX73_003940 0.60 -1.2
846,198 + TX73_003940 0.61 +0.1
846,206 - TX73_003940 0.63 -0.1
846,222 + TX73_003940 0.65 +0.5
846,251 + TX73_003940 0.70 -0.3
846,269 - TX73_003940 0.73 -0.1
846,283 - TX73_003940 0.75 +0.7
846,333 + TX73_003940 0.83 +0.4
846,374 - -0.4
846,502 + -0.3
846,553 + TX73_003945 0.14 +0.6
846,586 + TX73_003945 0.22 +0.6
846,586 + TX73_003945 0.22 -0.0
846,622 + TX73_003945 0.30 -0.2
846,630 - TX73_003945 0.32 +0.1
846,661 + TX73_003945 0.39 +2.5
846,674 - TX73_003945 0.42 +0.2
846,674 - TX73_003945 0.42 -1.1
846,699 + TX73_003945 0.48 +0.3
846,710 + TX73_003945 0.50 +0.3
846,718 - TX73_003945 0.52 +0.2
846,837 - TX73_003945 0.80 +0.7
846,855 - TX73_003945 0.84 -0.2
846,994 - +0.6
847,125 - +0.5
847,129 - +0.8
847,131 - -0.2
847,131 - +1.3
847,209 - TX73_003950 0.11 -0.6
847,209 - TX73_003950 0.11 +0.1
847,219 - TX73_003950 0.12 +0.4
847,278 - TX73_003950 0.14 -0.0
847,332 - TX73_003950 0.16 +0.0
847,346 - TX73_003950 0.17 -0.2
847,474 + TX73_003950 0.22 -0.4
847,488 + TX73_003950 0.23 -0.3
847,490 + TX73_003950 0.23 -0.9
847,548 + TX73_003950 0.25 +0.9
847,551 - TX73_003950 0.26 -0.0
847,605 - TX73_003950 0.28 +1.2
847,679 - TX73_003950 0.31 -0.2
847,679 - TX73_003950 0.31 -0.2
847,679 - TX73_003950 0.31 -0.8
847,710 - TX73_003950 0.32 +0.1
847,712 + TX73_003950 0.32 -0.0
847,720 - TX73_003950 0.33 -0.0
847,725 - TX73_003950 0.33 +0.1
847,777 + TX73_003950 0.35 -0.1
847,788 + TX73_003950 0.36 -0.1
847,820 - TX73_003950 0.37 +0.2
847,826 + TX73_003950 0.37 +1.2
847,882 + TX73_003950 0.40 -0.1
847,892 + TX73_003950 0.40 +0.6
847,900 - TX73_003950 0.40 -0.4
847,954 + TX73_003950 0.43 +0.3
847,954 + TX73_003950 0.43 +0.2
847,966 - TX73_003950 0.43 +0.1
847,993 - TX73_003950 0.44 -0.1
848,016 + TX73_003950 0.45 +0.9
848,053 + TX73_003950 0.47 -0.0
848,143 + TX73_003950 0.51 -0.1
848,159 - TX73_003950 0.51 -0.2
848,192 + TX73_003950 0.53 -0.3
848,200 - TX73_003950 0.53 -0.1
848,212 + TX73_003950 0.54 +0.2
848,404 + TX73_003950 0.62 -0.1
848,473 - TX73_003950 0.65 -0.5
848,486 - TX73_003950 0.65 -0.1
848,560 - TX73_003950 0.68 -1.1
848,572 + TX73_003950 0.69 -0.2
848,584 + TX73_003950 0.69 -0.0
848,593 - TX73_003950 0.70 +0.2
848,637 + TX73_003950 0.72 -0.5
848,640 - TX73_003950 0.72 +0.2
848,645 - TX73_003950 0.72 +0.1
848,674 + TX73_003950 0.73 +0.2
848,682 - TX73_003950 0.73 -0.6
848,713 + TX73_003950 0.75 +0.4
848,762 + TX73_003950 0.77 -0.4
848,795 + TX73_003950 0.78 +1.1
848,795 + TX73_003950 0.78 -0.4
848,795 + TX73_003950 0.78 -1.1
848,795 + TX73_003950 0.78 -1.8
848,795 + TX73_003950 0.78 +0.2
848,795 + TX73_003950 0.78 -1.1
848,798 + TX73_003950 0.78 -0.3
848,803 - TX73_003950 0.79 +0.8
848,803 - TX73_003950 0.79 +0.0
848,803 - TX73_003950 0.79 +0.2
848,803 - TX73_003950 0.79 -0.4
848,803 - TX73_003950 0.79 -1.0
848,887 + TX73_003950 0.82 -0.6
848,919 + TX73_003950 0.83 -0.6
848,920 - TX73_003950 0.84 -0.5
848,921 + TX73_003950 0.84 +0.3
848,927 - TX73_003950 0.84 -1.4
848,927 - TX73_003950 0.84 -0.1
848,959 - TX73_003950 0.85 -0.9
849,003 - TX73_003950 0.87 -0.2
849,030 - TX73_003950 0.88 +0.0
849,032 + TX73_003950 0.88 -0.2
849,082 - +0.1
849,087 - -0.5
849,116 + +0.3
849,140 + -0.4
849,144 + -0.6
849,185 + -0.1
849,185 + -0.5
849,193 - -0.0
849,193 - +0.7
849,193 - +1.1
849,216 - -0.5
849,244 + -0.4
849,382 + +0.4
849,485 + +0.5
849,493 - -0.6
849,550 + +0.9
849,682 - +1.0
849,708 + -1.0
849,718 + +1.5
849,721 - -0.1
849,726 - +0.0
849,733 + +1.0
849,794 + TX73_003955 0.12 -0.0
849,810 + TX73_003955 0.15 -1.1
849,829 + TX73_003955 0.17 +0.3
849,829 + TX73_003955 0.17 +1.1
849,829 - TX73_003955 0.17 +0.3
849,865 - TX73_003955 0.23 -0.1
849,895 - TX73_003955 0.27 -0.2
849,897 + TX73_003955 0.27 -0.2
849,905 - TX73_003955 0.28 -0.4
849,951 + TX73_003955 0.35 +0.3
849,951 + TX73_003955 0.35 -0.8
849,954 - TX73_003955 0.35 -0.6
849,959 - TX73_003955 0.36 -2.2
849,982 + TX73_003955 0.39 +0.8
849,988 + TX73_003955 0.40 +0.3
850,013 + TX73_003955 0.44 +0.2
850,018 + TX73_003955 0.44 +0.4
850,018 + TX73_003955 0.44 +0.0
850,018 + TX73_003955 0.44 -0.8
850,021 - TX73_003955 0.45 +0.2
850,026 - TX73_003955 0.45 +0.3
850,046 - TX73_003955 0.48 -0.0
850,057 + TX73_003955 0.50 -0.5
850,064 + TX73_003955 0.51 -0.7
850,072 - TX73_003955 0.52 -1.7
850,119 + TX73_003955 0.59 -1.3
850,156 + TX73_003955 0.64 -0.7
850,157 - TX73_003955 0.64 -2.0
850,200 - TX73_003955 0.70 -0.4
850,209 - TX73_003955 0.71 +0.5
850,209 - TX73_003955 0.71 +0.1
850,253 + TX73_003955 0.78 +0.0
850,261 - TX73_003955 0.79 +1.2
850,288 - TX73_003955 0.83 -0.7
850,300 - TX73_003955 0.84 -0.6

Or see this region's nucleotide sequence