Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_016345

Experiment: MDC_bicarb with butyrate and Adenine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MDC_bicarb with butyrate and Adenine
3,567,454	+		TX73_016335	0.65	+2.4
3,567,460	+		TX73_016335	0.67	+0.5
3,567,519	+		TX73_016335	0.88	+0.5
3,567,521	+		TX73_016335	0.88	-1.1
3,567,521	+		TX73_016335	0.88	-2.4
3,567,521	+		TX73_016335	0.88	+0.2
3,567,531	-				-0.5
3,567,550	-				-1.2
3,567,555	-				+1.1
3,567,557	-				-1.5
3,567,605	+				-2.7
3,567,623	+				-0.3
3,567,657	+		TX73_016340	0.12	+0.5
3,567,738	-		TX73_016340	0.22	-0.7
3,567,761	-		TX73_016340	0.25	+0.0
3,567,877	+		TX73_016340	0.40	+0.2
3,567,897	+		TX73_016340	0.42	-0.9
3,567,908	+		TX73_016340	0.44	+0.4
3,567,952	+		TX73_016340	0.49	-0.3
3,567,974	+		TX73_016340	0.52	-0.1
3,567,984	+		TX73_016340	0.53	-0.8
3,567,999	-		TX73_016340	0.55	+0.2
3,567,999	-		TX73_016340	0.55	+1.2
3,567,999	-		TX73_016340	0.55	+0.1
3,568,078	+		TX73_016340	0.65	+0.1
3,568,078	+		TX73_016340	0.65	+0.7
3,568,078	+		TX73_016340	0.65	+0.1
3,568,084	-		TX73_016340	0.66	-0.3
3,568,084	-		TX73_016340	0.66	-1.5
3,568,084	-		TX73_016340	0.66	-0.5
3,568,086	-		TX73_016340	0.66	+0.4
3,568,087	+		TX73_016340	0.66	-0.6
3,568,132	+		TX73_016340	0.72	-1.0
3,568,133	-		TX73_016340	0.72	+0.4
3,568,134	-		TX73_016340	0.72	+0.7
3,568,160	-		TX73_016340	0.75	+0.7
3,568,235	+		TX73_016340	0.85	-0.2
3,568,235	+		TX73_016340	0.85	-0.6
3,568,284	+				-0.1
3,568,284	+				+1.3
3,568,292	-				+0.5
3,568,310	-				-0.1
3,568,332	+				-0.3
3,568,342	+				-2.6
3,568,392	+				-0.4
3,568,413	-				-0.2
3,568,418	-				-3.2
3,568,432	+				+0.6
3,568,440	-				-0.3
3,568,440	-				+1.0
3,568,440	-				-1.1
3,568,445	-				+0.3
3,568,500	+				+0.2
3,568,548	-		TX73_016345	0.14	-0.1
3,568,559	+		TX73_016345	0.16	+0.3
3,568,605	+		TX73_016345	0.21	-0.9
3,568,610	+		TX73_016345	0.22	-1.9
3,568,618	-		TX73_016345	0.23	+0.3
3,568,618	-		TX73_016345	0.23	-0.4
3,568,628	+		TX73_016345	0.24	-0.4
3,568,636	-		TX73_016345	0.25	-0.2
3,568,654	+		TX73_016345	0.27	+1.9
3,568,662	-		TX73_016345	0.28	-2.3
3,568,662	-		TX73_016345	0.28	+0.9
3,568,669	+		TX73_016345	0.29	-0.9
3,568,669	+		TX73_016345	0.29	-1.3
3,568,703	-		TX73_016345	0.33	+0.4
3,568,705	+		TX73_016345	0.33	-0.4
3,568,718	-		TX73_016345	0.35	+0.6
3,568,723	-		TX73_016345	0.35	+0.8
3,568,732	+		TX73_016345	0.36	-1.0
3,568,781	+		TX73_016345	0.42	+0.5
3,568,794	+		TX73_016345	0.44	-0.5
3,568,794	+		TX73_016345	0.44	-0.4
3,568,794	+		TX73_016345	0.44	-0.8
3,568,832	+		TX73_016345	0.48	-0.6
3,568,868	-		TX73_016345	0.53	-2.2
3,568,874	+		TX73_016345	0.53	+0.8
3,568,933	+		TX73_016345	0.60	-1.3
3,568,933	+		TX73_016345	0.60	-0.8
3,568,977	+		TX73_016345	0.66	+0.2
3,568,981	+		TX73_016345	0.66	+0.8
3,568,981	+		TX73_016345	0.66	+0.4
3,568,981	+		TX73_016345	0.66	-0.8
3,568,983	+		TX73_016345	0.66	+0.5
3,568,989	-		TX73_016345	0.67	+0.2
3,568,989	-		TX73_016345	0.67	-1.7
3,569,008	-		TX73_016345	0.69	+0.2
3,569,024	+		TX73_016345	0.71	+0.4
3,569,032	-		TX73_016345	0.72	+0.8
3,569,032	-		TX73_016345	0.72	-0.6
3,569,039	-		TX73_016345	0.73	+0.6
3,569,039	-		TX73_016345	0.73	-0.5
3,569,057	+		TX73_016345	0.75	+0.4
3,569,085	+		TX73_016345	0.79	-0.2
3,569,110	+		TX73_016345	0.82	-0.4
3,569,112	-		TX73_016345	0.82	+1.6
3,569,139	-		TX73_016345	0.85	-1.0
3,569,166	+		TX73_016345	0.88	-0.8
3,569,173	+		TX73_016345	0.89	-2.1
3,569,187	+				-0.7
3,569,217	+				+0.2
3,569,218	-				+0.0
3,569,224	+				+1.3
3,569,230	+				+2.5
3,569,240	-				+0.4
3,569,257	-				+0.6
3,569,259	+				+0.2
3,569,295	+				+0.3
3,569,305	+				+0.6
3,569,313	-				-1.1
3,569,392	+		TX73_016350	0.21	+0.2
3,569,400	-		TX73_016350	0.23	+1.4
3,569,400	-		TX73_016350	0.23	+0.1
3,569,422	-		TX73_016350	0.29	+1.2
3,569,425	-		TX73_016350	0.30	+0.7
3,569,441	-		TX73_016350	0.35	+0.9
3,569,441	-		TX73_016350	0.35	-0.3
3,569,446	-		TX73_016350	0.36	-2.6
3,569,446	-		TX73_016350	0.36	+0.8
3,569,448	+		TX73_016350	0.37	-0.1
3,569,452	+		TX73_016350	0.38	+0.2
3,569,453	+		TX73_016350	0.38	+1.2
3,569,453	+		TX73_016350	0.38	-1.4
3,569,453	+		TX73_016350	0.38	+0.1
3,569,461	-		TX73_016350	0.40	-0.0
3,569,463	+		TX73_016350	0.41	+0.1
3,569,480	+		TX73_016350	0.46	+1.1
3,569,480	+		TX73_016350	0.46	-0.8
3,569,488	-		TX73_016350	0.48	+0.8
3,569,488	-		TX73_016350	0.48	-0.4
3,569,488	-		TX73_016350	0.48	+0.7
3,569,516	+		TX73_016350	0.56	+0.5
3,569,521	+		TX73_016350	0.57	+0.8
3,569,524	-		TX73_016350	0.58	+0.9
3,569,524	-		TX73_016350	0.58	-0.8
3,569,524	-		TX73_016350	0.58	+0.6
3,569,529	-		TX73_016350	0.59	+0.1
3,569,531	+		TX73_016350	0.60	-0.7
3,569,553	+		TX73_016350	0.66	+0.5
3,569,553	+		TX73_016350	0.66	-1.4
3,569,561	-		TX73_016350	0.68	-0.4
3,569,561	-		TX73_016350	0.68	+0.2
3,569,561	-		TX73_016350	0.68	+0.1
3,569,561	-		TX73_016350	0.68	+0.3
3,569,567	+		TX73_016350	0.70	+1.7
3,569,573	-		TX73_016350	0.72	+0.5
3,569,586	+		TX73_016350	0.75	-1.1
3,569,586	+		TX73_016350	0.75	-2.1
3,569,586	+		TX73_016350	0.75	+0.9
3,569,586	+		TX73_016350	0.75	-0.1
3,569,594	-		TX73_016350	0.78	-1.7
3,569,594	-		TX73_016350	0.78	+1.0
3,569,594	-		TX73_016350	0.78	+0.2
3,569,594	-		TX73_016350	0.78	-2.9
3,569,594	-		TX73_016350	0.78	+1.3
3,569,594	-		TX73_016350	0.78	+0.0
3,569,594	-		TX73_016350	0.78	-0.3
3,569,599	-		TX73_016350	0.79	+0.3
3,569,614	+		TX73_016350	0.83	+0.3
3,569,614	+		TX73_016350	0.83	-0.2
3,569,639	-				-0.6
3,569,651	+				-1.7
3,569,755	-				-0.8
3,569,757	+				-0.4
3,569,765	-				+0.7
3,569,780	-				+0.7
3,569,790	-				+0.8
3,569,792	+				+0.1
3,569,800	-				+2.0
3,569,838	-				+0.6
3,569,880	+		TX73_016355	0.11	-1.7
3,569,896	-		TX73_016355	0.12	-0.9
3,569,900	+		TX73_016355	0.12	+0.5
3,569,927	-		TX73_016355	0.14	-0.7
3,569,933	+		TX73_016355	0.14	+0.4
3,569,941	-		TX73_016355	0.15	-0.3
3,569,943	+		TX73_016355	0.15	+0.2
3,569,943	+		TX73_016355	0.15	+0.5
3,569,967	-		TX73_016355	0.17	-1.5
3,569,997	+		TX73_016355	0.19	-0.6
3,570,029	+		TX73_016355	0.21	-1.8
3,570,037	-		TX73_016355	0.22	+1.1
3,570,076	+		TX73_016355	0.25	-2.2
3,570,076	+		TX73_016355	0.25	-3.4
3,570,081	+		TX73_016355	0.25	-0.1
3,570,081	+		TX73_016355	0.25	+0.5
3,570,084	-		TX73_016355	0.25	-3.1
3,570,084	-		TX73_016355	0.25	+0.1
3,570,084	-		TX73_016355	0.25	-0.1
3,570,084	-		TX73_016355	0.25	-1.8
3,570,088	+		TX73_016355	0.25	+0.2
3,570,089	-		TX73_016355	0.25	-1.0
3,570,139	+		TX73_016355	0.29	-0.1
3,570,160	+		TX73_016355	0.30	+0.2
3,570,160	+		TX73_016355	0.30	-0.4
3,570,160	+		TX73_016355	0.30	+0.7
3,570,168	-		TX73_016355	0.31	-0.3
3,570,168	-		TX73_016355	0.31	+0.0
3,570,171	+		TX73_016355	0.31	-0.5
3,570,171	+		TX73_016355	0.31	+0.3
3,570,194	+		TX73_016355	0.33	-0.6
3,570,205	+		TX73_016355	0.34	+0.1
3,570,205	+		TX73_016355	0.34	-0.3
3,570,228	-		TX73_016355	0.35	-0.5
3,570,244	+		TX73_016355	0.36	-0.6
3,570,244	+		TX73_016355	0.36	+0.8
3,570,251	-		TX73_016355	0.37	-0.1
3,570,252	-		TX73_016355	0.37	-0.1