Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_011540

Experiment: MDC_bicarb with butyrate and Adenine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MDC_bicarb with butyrate and Adenine
2,532,724	+		TX73_011535	0.56	-0.8
2,532,730	-		TX73_011535	0.57	+0.0
2,532,730	-		TX73_011535	0.57	-0.5
2,532,732	-		TX73_011535	0.57	-0.7
2,532,768	-		TX73_011535	0.58	+0.7
2,532,854	-		TX73_011535	0.63	+0.4
2,532,936	+		TX73_011535	0.67	-0.6
2,532,936	+		TX73_011535	0.67	-0.2
2,532,936	+		TX73_011535	0.67	-1.0
2,532,936	+		TX73_011535	0.67	-1.3
2,532,944	-		TX73_011535	0.67	+0.4
2,532,944	-		TX73_011535	0.67	+0.0
2,532,944	-		TX73_011535	0.67	-1.4
2,532,956	+		TX73_011535	0.68	-0.3
2,532,968	+		TX73_011535	0.68	-0.8
2,532,968	+		TX73_011535	0.68	+0.6
2,532,968	+		TX73_011535	0.68	+0.1
2,532,970	+		TX73_011535	0.69	+0.2
2,532,976	-		TX73_011535	0.69	-1.3
2,532,976	-		TX73_011535	0.69	+0.0
2,532,976	-		TX73_011535	0.69	-0.1
2,532,976	-		TX73_011535	0.69	+0.8
2,532,976	-		TX73_011535	0.69	-1.9
2,532,978	+		TX73_011535	0.69	+0.7
2,532,988	+		TX73_011535	0.69	-2.6
2,533,007	-		TX73_011535	0.70	+2.1
2,533,014	-		TX73_011535	0.71	-0.6
2,533,055	-		TX73_011535	0.73	-1.6
2,533,069	-		TX73_011535	0.74	+0.7
2,533,085	-		TX73_011535	0.74	-0.5
2,533,096	+		TX73_011535	0.75	-0.9
2,533,096	+		TX73_011535	0.75	-0.1
2,533,112	-		TX73_011535	0.76	-1.6
2,533,117	-		TX73_011535	0.76	-2.0
2,533,130	+		TX73_011535	0.77	+0.0
2,533,265	-		TX73_011535	0.83	-2.4
2,533,265	-		TX73_011535	0.83	-1.4
2,533,265	-		TX73_011535	0.83	-0.3
2,533,284	-		TX73_011535	0.84	-1.9
2,533,307	-		TX73_011535	0.85	+0.1
2,533,344	+		TX73_011535	0.87	-0.9
2,533,352	-		TX73_011535	0.88	+1.2
2,533,352	-		TX73_011535	0.88	-1.9
2,533,361	-		TX73_011535	0.88	-0.5
2,533,371	-		TX73_011535	0.89	-0.2
2,533,395	-		TX73_011535	0.90	-0.6
2,533,395	-		TX73_011535	0.90	+0.1
2,533,430	+				-0.8
2,533,477	-				+1.1
2,533,491	-				+0.8
2,533,500	-				+0.2
2,533,521	-				+0.0
2,533,528	+				+0.6
2,533,528	+				+0.2
2,533,540	+				+0.8
2,533,540	+				+0.7
2,533,562	+				-0.4
2,533,635	-				+0.9
2,533,685	-				+1.6
2,533,690	-				+1.0
2,533,691	+				+0.1
2,533,691	+				-0.1
2,533,699	-				-2.0
2,533,711	-				-1.2
2,533,757	-				-0.5
2,533,762	+				+0.4
2,533,777	+				+0.6
2,533,844	-				-1.3
2,533,844	-				-0.4
2,533,867	+				+0.6
2,533,870	+				-1.0
2,533,892	+		TX73_011540	0.10	-0.4
2,533,893	+		TX73_011540	0.10	-0.1
2,533,919	+		TX73_011540	0.12	-0.4
2,533,955	+		TX73_011540	0.14	-0.2
2,533,961	+		TX73_011540	0.14	-0.6
2,533,968	+		TX73_011540	0.15	-1.7
2,533,969	+		TX73_011540	0.15	+0.4
2,533,969	-		TX73_011540	0.15	+0.4
2,533,970	-		TX73_011540	0.15	+0.4
2,534,063	+		TX73_011540	0.20	+0.4
2,534,071	-		TX73_011540	0.21	+0.6
2,534,147	+		TX73_011540	0.25	-1.0
2,534,171	-		TX73_011540	0.26	+0.7
2,534,227	-		TX73_011540	0.29	-0.5
2,534,247	+		TX73_011540	0.31	+0.0
2,534,296	-		TX73_011540	0.33	+0.6
2,534,297	-		TX73_011540	0.33	-0.1
2,534,310	-		TX73_011540	0.34	-0.3
2,534,370	+		TX73_011540	0.38	-1.4
2,534,522	+		TX73_011540	0.46	-0.0
2,534,561	-		TX73_011540	0.48	-0.5
2,534,574	-		TX73_011540	0.49	+0.2
2,534,600	-		TX73_011540	0.51	+0.5
2,534,667	-		TX73_011540	0.55	+0.2
2,534,667	-		TX73_011540	0.55	+0.8
2,534,680	+		TX73_011540	0.55	-0.0
2,534,740	-		TX73_011540	0.59	+0.4
2,534,740	-		TX73_011540	0.59	-0.3
2,534,740	-		TX73_011540	0.59	+0.3
2,534,745	-		TX73_011540	0.59	+1.6
2,534,745	-		TX73_011540	0.59	-0.8
2,534,751	+		TX73_011540	0.59	-0.7
2,534,756	+		TX73_011540	0.60	-1.1
2,534,764	-		TX73_011540	0.60	+0.1
2,534,766	+		TX73_011540	0.60	-1.0
2,534,768	+		TX73_011540	0.60	-2.5
2,534,776	-		TX73_011540	0.61	-0.6
2,534,776	-		TX73_011540	0.61	+1.1
2,534,776	-		TX73_011540	0.61	+0.1
2,534,776	-		TX73_011540	0.61	+0.5
2,534,810	+		TX73_011540	0.63	-0.4
2,534,815	+		TX73_011540	0.63	+0.5
2,534,817	-		TX73_011540	0.63	-0.6
2,534,828	-		TX73_011540	0.64	-0.7
2,534,846	-		TX73_011540	0.65	-0.1
2,534,847	-		TX73_011540	0.65	+0.3
2,534,871	+		TX73_011540	0.66	+0.4
2,534,910	-		TX73_011540	0.68	-1.2
2,534,925	-		TX73_011540	0.69	+0.3
2,534,927	-		TX73_011540	0.69	-0.4
2,534,927	-		TX73_011540	0.69	-1.5
2,534,927	-		TX73_011540	0.69	-0.2
2,534,950	-		TX73_011540	0.71	+0.1
2,534,950	-		TX73_011540	0.71	-0.4
2,534,965	+		TX73_011540	0.72	+0.7
2,534,973	-		TX73_011540	0.72	+0.5
2,534,983	-		TX73_011540	0.73	+0.1
2,535,003	-		TX73_011540	0.74	-0.0
2,535,072	-		TX73_011540	0.78	-0.1
2,535,074	+		TX73_011540	0.78	-0.7
2,535,082	-		TX73_011540	0.78	-0.4
2,535,082	-		TX73_011540	0.78	-1.3
2,535,087	-		TX73_011540	0.78	-0.5
2,535,092	-		TX73_011540	0.79	-1.5
2,535,098	-		TX73_011540	0.79	+1.0
2,535,103	-		TX73_011540	0.79	-0.3
2,535,110	-		TX73_011540	0.80	-0.3
2,535,112	-		TX73_011540	0.80	-0.7
2,535,171	-		TX73_011540	0.83	+1.2
2,535,176	-		TX73_011540	0.84	-0.0
2,535,178	+		TX73_011540	0.84	+0.3
2,535,178	+		TX73_011540	0.84	+0.9
2,535,178	+		TX73_011540	0.84	-1.2
2,535,186	-		TX73_011540	0.84	-0.2
2,535,248	+		TX73_011540	0.88	+1.1
2,535,253	+		TX73_011540	0.88	-0.1
2,535,254	-		TX73_011540	0.88	+0.1
2,535,256	-		TX73_011540	0.88	+1.8
2,535,256	-		TX73_011540	0.88	+0.1
2,535,258	+		TX73_011540	0.88	+0.0
2,535,258	+		TX73_011540	0.88	-0.7
2,535,258	+		TX73_011540	0.88	-0.1
2,535,266	-		TX73_011540	0.89	-0.1
2,535,266	-		TX73_011540	0.89	+1.0
2,535,266	-		TX73_011540	0.89	+0.2
2,535,266	-		TX73_011540	0.89	-0.8
2,535,292	+				-0.8
2,535,343	+				+0.4
2,535,396	+				-0.6
2,535,438	-				-0.1
2,535,443	+				-0.1
2,535,443	+				-1.5
2,535,451	-				-0.7
2,535,451	-				+0.0
2,535,595	-				+0.2
2,535,595	-				-1.4
2,535,611	+				+0.4
2,535,625	-				-0.9
2,535,634	+				+0.1
2,535,634	+				-0.0
2,535,634	+				-0.0
2,535,634	+				+0.1
2,535,644	+				-0.7
2,535,653	-				+0.7
2,535,671	+				-0.2
2,535,673	-				-0.3
2,535,680	-				-1.2
2,535,702	+				-0.0
2,535,730	+				+0.2
2,535,730	+				+0.4
2,535,732	-				-3.2
2,535,732	-				+1.0
2,535,793	-				-1.0
2,535,806	-				+0.2
2,535,826	-		TX73_011545	0.11	-0.8
2,535,828	+		TX73_011545	0.11	+0.8
2,535,831	-		TX73_011545	0.12	-0.1
2,535,831	-		TX73_011545	0.12	+0.6
2,535,841	-		TX73_011545	0.13	-0.3
2,535,865	-		TX73_011545	0.16	+1.2
2,535,884	-		TX73_011545	0.18	-1.6
2,535,887	+		TX73_011545	0.18	+0.2
2,535,894	-		TX73_011545	0.19	-0.4
2,535,900	-		TX73_011545	0.20	+0.5
2,535,900	-		TX73_011545	0.20	-0.4
2,535,916	-		TX73_011545	0.22	-1.0
2,535,961	+		TX73_011545	0.27	-0.4
2,535,987	+		TX73_011545	0.30	-0.1
2,535,989	+		TX73_011545	0.30	-0.0
2,536,000	+		TX73_011545	0.32	-1.0
2,536,015	+		TX73_011545	0.33	+0.0
2,536,022	+		TX73_011545	0.34	-2.5
2,536,028	+		TX73_011545	0.35	+0.4
2,536,036	+		TX73_011545	0.36	+0.0
2,536,091	+		TX73_011545	0.42	+0.4
2,536,120	+		TX73_011545	0.46	+0.1
2,536,136	+		TX73_011545	0.48	+0.4
2,536,158	+		TX73_011545	0.50	-0.3
2,536,169	+		TX73_011545	0.52	+0.5
2,536,169	+		TX73_011545	0.52	-0.7
2,536,177	-		TX73_011545	0.53	-0.3
2,536,177	-		TX73_011545	0.53	-0.8
2,536,177	-		TX73_011545	0.53	-0.6
2,536,177	-		TX73_011545	0.53	-1.6
2,536,177	-		TX73_011545	0.53	-0.1
2,536,177	-		TX73_011545	0.53	+0.6
2,536,177	-		TX73_011545	0.53	+1.1
2,536,224	+		TX73_011545	0.58	+0.7
2,536,230	-		TX73_011545	0.59	+1.2
2,536,232	-		TX73_011545	0.59	-0.7
2,536,232	-		TX73_011545	0.59	+0.5
2,536,242	-		TX73_011545	0.60	-2.0
2,536,267	-		TX73_011545	0.63	-1.2
2,536,276	+		TX73_011545	0.64	-1.6
2,536,280	-		TX73_011545	0.65	-0.4
2,536,306	+		TX73_011545	0.68	-0.3
2,536,321	-		TX73_011545	0.70	+0.8
2,536,326	-		TX73_011545	0.70	+0.0
2,536,331	-		TX73_011545	0.71	-1.0
2,536,341	-		TX73_011545	0.72	-0.7
2,536,396	+		TX73_011545	0.79	-1.4
2,536,396	+		TX73_011545	0.79	-1.2
2,536,404	-		TX73_011545	0.80	-2.0
2,536,412	+		TX73_011545	0.81	-0.7
2,536,462	-		TX73_011545	0.86	-3.3