Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_025120

Experiment: MDC_bicarb with butyrate and Adenine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MDC_bicarb with butyrate and Adenine
5,455,917	-		TX73_025110	0.75	-0.2
5,455,920	-		TX73_025110	0.76	-1.5
5,455,933	+		TX73_025110	0.78	-0.0
5,455,933	+		TX73_025110	0.78	+0.7
5,455,947	+		TX73_025110	0.80	-0.8
5,455,954	+		TX73_025110	0.81	-0.1
5,455,954	+		TX73_025110	0.81	-3.2
5,455,968	-		TX73_025110	0.83	+0.4
5,455,996	-		TX73_025110	0.87	+0.4
5,456,000	-		TX73_025110	0.88	-1.4
5,456,011	+		TX73_025110	0.89	-0.1
5,456,019	-				+0.2
5,456,032	+				+0.5
5,456,035	-				+0.0
5,456,041	+				+1.2
5,456,041	+				-1.1
5,456,051	+				+0.2
5,456,059	-				-0.5
5,456,064	-				+0.2
5,456,073	+				+0.5
5,456,079	-				+0.6
5,456,087	+				-0.3
5,456,095	-				+0.0
5,456,095	-				+1.0
5,456,095	-				-0.2
5,456,095	-				+0.0
5,456,100	-				+0.1
5,456,107	+				+0.6
5,456,136	-				-0.9
5,456,141	+				+0.7
5,456,141	+				-0.9
5,456,146	+				+0.1
5,456,146	+				+0.2
5,456,148	+				-0.3
5,456,171	+				-0.0
5,456,171	-				-0.0
5,456,174	-		TX73_025115	0.10	+0.6
5,456,181	+		TX73_025115	0.11	+1.0
5,456,189	-		TX73_025115	0.12	+1.4
5,456,204	-		TX73_025115	0.15	-1.1
5,456,206	+		TX73_025115	0.15	+1.4
5,456,212	-		TX73_025115	0.16	-0.7
5,456,237	+		TX73_025115	0.20	-3.0
5,456,239	+		TX73_025115	0.20	+0.5
5,456,265	+		TX73_025115	0.24	-0.5
5,456,280	-		TX73_025115	0.26	+0.6
5,456,282	-		TX73_025115	0.27	+0.1
5,456,285	-		TX73_025115	0.27	-0.0
5,456,294	+		TX73_025115	0.28	-0.3
5,456,318	+		TX73_025115	0.32	-0.6
5,456,384	-		TX73_025115	0.42	-0.4
5,456,384	-		TX73_025115	0.42	+0.9
5,456,411	-		TX73_025115	0.46	-3.2
5,456,417	+		TX73_025115	0.47	+0.9
5,456,434	-		TX73_025115	0.50	+0.4
5,456,439	+		TX73_025115	0.51	-0.6
5,456,439	+		TX73_025115	0.51	-0.6
5,456,444	+		TX73_025115	0.51	-0.4
5,456,447	-		TX73_025115	0.52	+0.4
5,456,447	-		TX73_025115	0.52	+0.2
5,456,447	-		TX73_025115	0.52	-0.0
5,456,452	-		TX73_025115	0.53	+0.1
5,456,452	-		TX73_025115	0.53	-0.4
5,456,497	+		TX73_025115	0.60	-1.2
5,456,500	-		TX73_025115	0.60	+0.5
5,456,502	+		TX73_025115	0.60	+0.5
5,456,502	+		TX73_025115	0.60	+1.5
5,456,502	+		TX73_025115	0.60	+1.3
5,456,502	+		TX73_025115	0.60	+0.5
5,456,510	-		TX73_025115	0.62	-0.5
5,456,510	-		TX73_025115	0.62	-0.2
5,456,520	+		TX73_025115	0.63	-0.9
5,456,525	-		TX73_025115	0.64	+0.5
5,456,525	-		TX73_025115	0.64	-0.8
5,456,556	+		TX73_025115	0.69	-0.2
5,456,591	-		TX73_025115	0.74	-1.0
5,456,637	+		TX73_025115	0.81	-1.3
5,456,660	+		TX73_025115	0.85	+0.2
5,456,665	+		TX73_025115	0.85	+1.4
5,456,666	+		TX73_025115	0.86	+0.3
5,456,666	+		TX73_025115	0.86	-0.0
5,456,674	-		TX73_025115	0.87	-0.1
5,456,674	-		TX73_025115	0.87	-0.2
5,456,685	+		TX73_025115	0.88	+0.7
5,456,743	-				-0.1
5,456,745	-				-0.3
5,456,748	+				-0.2
5,456,748	+				+1.0
5,456,748	+				+0.1
5,456,748	+				-0.4
5,456,748	+				+0.3
5,456,748	-				-0.0
5,456,755	-				-0.5
5,456,761	-				-2.8
5,456,798	-				-0.0
5,456,828	-				+0.3
5,456,851	-				-0.9
5,456,897	+				+0.2
5,456,909	-				-2.0
5,456,909	-				-0.6
5,456,911	+				-1.1
5,456,911	+				+0.5
5,456,916	+				+0.2
5,456,918	+				-2.1
5,456,919	-				+1.7
5,456,921	+				+2.6
5,456,924	-				+0.5
5,456,924	-				+0.1
5,456,926	-				+0.1
5,456,926	-				-0.6
5,456,929	-				+0.3
5,456,965	+		TX73_025120	0.12	+0.8
5,456,989	+		TX73_025120	0.16	+1.4
5,456,989	+		TX73_025120	0.16	-1.3
5,456,989	+		TX73_025120	0.16	+1.1
5,456,989	+		TX73_025120	0.16	-1.0
5,456,989	+		TX73_025120	0.16	-0.5
5,456,992	+		TX73_025120	0.16	+0.2
5,456,997	-		TX73_025120	0.17	-0.9
5,456,997	-		TX73_025120	0.17	-0.4
5,456,997	-		TX73_025120	0.17	-1.0
5,457,000	-		TX73_025120	0.17	-0.6
5,457,000	-		TX73_025120	0.17	+0.2
5,457,001	+		TX73_025120	0.18	-1.2
5,457,032	+		TX73_025120	0.22	+0.1
5,457,032	+		TX73_025120	0.22	+0.1
5,457,034	+		TX73_025120	0.23	+0.8
5,457,040	+		TX73_025120	0.23	+0.2
5,457,040	+		TX73_025120	0.23	+0.2
5,457,040	+		TX73_025120	0.23	+0.3
5,457,042	-		TX73_025120	0.24	+2.0
5,457,042	-		TX73_025120	0.24	+0.5
5,457,055	-		TX73_025120	0.26	+0.3
5,457,066	+		TX73_025120	0.27	-2.2
5,457,067	-		TX73_025120	0.28	+0.5
5,457,071	+		TX73_025120	0.28	+0.3
5,457,093	+		TX73_025120	0.32	+0.4
5,457,104	+		TX73_025120	0.33	-0.1
5,457,112	+		TX73_025120	0.34	+0.4
5,457,119	-		TX73_025120	0.35	+0.5
5,457,119	-		TX73_025120	0.35	-0.6
5,457,145	+		TX73_025120	0.39	-0.8
5,457,153	-		TX73_025120	0.41	+0.1
5,457,153	-		TX73_025120	0.41	-0.4
5,457,153	-		TX73_025120	0.41	-0.1
5,457,162	+		TX73_025120	0.42	-0.6
5,457,162	+		TX73_025120	0.42	+0.5
5,457,168	+		TX73_025120	0.43	-0.0
5,457,171	-		TX73_025120	0.43	-0.0
5,457,173	+		TX73_025120	0.44	-1.0
5,457,173	+		TX73_025120	0.44	-4.3
5,457,173	+		TX73_025120	0.44	-0.4
5,457,181	-		TX73_025120	0.45	-1.3
5,457,181	-		TX73_025120	0.45	-0.7
5,457,181	-		TX73_025120	0.45	+0.2
5,457,181	-		TX73_025120	0.45	+0.7
5,457,181	-		TX73_025120	0.45	+0.0
5,457,184	+		TX73_025120	0.45	-0.7
5,457,193	+		TX73_025120	0.47	-0.2
5,457,193	+		TX73_025120	0.47	-1.0
5,457,193	+		TX73_025120	0.47	+0.5
5,457,193	+		TX73_025120	0.47	-2.9
5,457,193	+		TX73_025120	0.47	+1.1
5,457,193	+		TX73_025120	0.47	+1.0
5,457,198	+		TX73_025120	0.47	-0.4
5,457,201	-		TX73_025120	0.48	+0.1
5,457,201	-		TX73_025120	0.48	-1.5
5,457,201	-		TX73_025120	0.48	-1.0
5,457,214	-		TX73_025120	0.50	-0.0
5,457,216	-		TX73_025120	0.50	+0.5
5,457,232	+		TX73_025120	0.53	+0.8
5,457,240	-		TX73_025120	0.54	-2.1
5,457,241	+		TX73_025120	0.54	-0.6
5,457,245	-		TX73_025120	0.55	-0.9
5,457,247	+		TX73_025120	0.55	+0.1
5,457,247	+		TX73_025120	0.55	-0.1
5,457,247	+		TX73_025120	0.55	-0.1
5,457,252	+		TX73_025120	0.56	+0.3
5,457,253	+		TX73_025120	0.56	-0.6
5,457,255	-		TX73_025120	0.56	-0.5
5,457,255	-		TX73_025120	0.56	+0.0
5,457,255	-		TX73_025120	0.56	-0.7
5,457,261	+		TX73_025120	0.57	+0.5
5,457,266	+		TX73_025120	0.58	+1.3
5,457,266	+		TX73_025120	0.58	-1.9
5,457,269	-		TX73_025120	0.58	-0.6
5,457,271	+		TX73_025120	0.59	-0.2
5,457,274	-		TX73_025120	0.59	+1.0
5,457,279	-		TX73_025120	0.60	-0.5
5,457,279	-		TX73_025120	0.60	-2.7
5,457,279	-		TX73_025120	0.60	+0.9
5,457,284	-		TX73_025120	0.61	+0.4
5,457,289	+		TX73_025120	0.61	+0.4
5,457,289	-		TX73_025120	0.61	-0.6
5,457,301	-		TX73_025120	0.63	-0.3
5,457,321	-		TX73_025120	0.66	-0.5
5,457,321	-		TX73_025120	0.66	-1.6
5,457,332	+		TX73_025120	0.68	+0.9
5,457,334	-		TX73_025120	0.68	-0.3
5,457,340	-		TX73_025120	0.69	+0.4
5,457,368	-		TX73_025120	0.73	+0.6
5,457,375	+		TX73_025120	0.74	+0.1
5,457,388	+		TX73_025120	0.76	+0.7
5,457,388	+		TX73_025120	0.76	-0.1
5,457,388	+		TX73_025120	0.76	-1.4
5,457,390	+		TX73_025120	0.77	-0.2
5,457,396	-		TX73_025120	0.78	+0.1
5,457,396	-		TX73_025120	0.78	+0.8
5,457,398	-		TX73_025120	0.78	+0.5
5,457,398	-		TX73_025120	0.78	+0.9
5,457,400	+		TX73_025120	0.78	+0.4
5,457,405	+		TX73_025120	0.79	-0.5
5,457,405	+		TX73_025120	0.79	-0.8
5,457,405	+		TX73_025120	0.79	+0.4
5,457,408	-		TX73_025120	0.79	+0.1
5,457,412	-		TX73_025120	0.80	+0.2
5,457,413	-		TX73_025120	0.80	+0.6
5,457,413	-		TX73_025120	0.80	+0.3
5,457,420	-		TX73_025120	0.81	-1.0
5,457,498	-				-0.5
5,457,599	+				-0.3
5,457,610	-				-1.1
5,457,613	+				-4.3
5,457,628	-				+0.1
5,457,660	+				+0.7
5,457,666	-				+2.0
5,457,666	-				-0.7
5,457,668	-				+0.1
5,457,689	+				-0.1
5,457,697	-				-0.8
5,457,723	+				-0.9
5,457,731	-				-1.1
5,457,749	+		TX73_025125	0.12	+0.4
5,457,753	+		TX73_025125	0.14	-0.1
5,457,763	+		TX73_025125	0.17	-0.4
5,457,763	+		TX73_025125	0.17	+1.5
5,457,782	-		TX73_025125	0.23	-0.4
5,457,787	-		TX73_025125	0.24	-0.3
5,457,787	-		TX73_025125	0.24	-0.3
5,457,795	-		TX73_025125	0.27	+1.7
5,457,813	+		TX73_025125	0.32	-1.1
5,457,816	-		TX73_025125	0.33	+0.7
5,457,821	-		TX73_025125	0.35	+0.8
5,457,821	-		TX73_025125	0.35	-0.9
5,457,821	-		TX73_025125	0.35	-0.3
5,457,831	-		TX73_025125	0.38	-1.4
5,457,835	-		TX73_025125	0.39	-1.7
5,457,835	-		TX73_025125	0.39	-0.4
5,457,845	+		TX73_025125	0.42	-1.2
5,457,850	+		TX73_025125	0.44	+0.3
5,457,850	+		TX73_025125	0.44	+0.0
5,457,863	-		TX73_025125	0.48	-1.8
5,457,876	+		TX73_025125	0.52	-0.3
5,457,881	+		TX73_025125	0.54	-0.8
5,457,886	+		TX73_025125	0.55	-1.1
5,457,886	+		TX73_025125	0.55	-0.7
5,457,886	+		TX73_025125	0.55	-1.6
5,457,886	+		TX73_025125	0.55	+0.4
5,457,889	-		TX73_025125	0.56	-2.5
5,457,894	-		TX73_025125	0.58	+0.0
5,457,917	+		TX73_025125	0.65	+0.2
5,457,920	-		TX73_025125	0.66	-1.9
5,457,943	-		TX73_025125	0.73	+0.7
5,457,954	+		TX73_025125	0.77	-1.0
5,457,960	-		TX73_025125	0.79	+1.1
5,457,965	-		TX73_025125	0.80	+0.4
5,457,965	-		TX73_025125	0.80	-1.1
5,457,965	-		TX73_025125	0.80	-1.6
5,457,984	+		TX73_025125	0.86	+0.2
5,457,984	+		TX73_025125	0.86	-0.4
5,457,992	-		TX73_025125	0.89	+0.2
5,458,017	-				+0.9
5,458,026	+				+0.3
5,458,033	-				-0.3
5,458,034	-				-0.2
5,458,034	-				-0.3
5,458,040	+				+0.5
5,458,052	+				+0.1
5,458,063	+				-1.7
5,458,063	+				-0.3
5,458,063	+				-1.1
5,458,071	-				+0.0
5,458,071	-				+0.0
5,458,071	-				-1.1
5,458,076	-				-1.8
5,458,092	+				-0.2
5,458,098	-				+0.0
5,458,098	-				-0.1
5,458,107	+				+0.0
5,458,109	+				+0.8
5,458,119	+				+1.0
5,458,119	+				+1.2
5,458,119	+				-0.1
5,458,119	+				-2.1
5,458,119	+				-0.5
5,458,119	+				+0.7
5,458,119	+				-0.4
5,458,119	+				-0.3
5,458,119	+				+1.0
5,458,119	+				+1.4
5,458,119	+				-0.3
5,458,127	-				+0.5
5,458,127	-				+0.7
5,458,127	-				-0.2
5,458,127	-				-2.7
5,458,127	-				-0.0
5,458,127	-				-1.2
5,458,127	-				+0.3
5,458,127	-				-2.9
5,458,127	-				-0.5
5,458,127	-				-0.8
5,458,127	-				-0.5
5,458,127	-				+0.3
5,458,127	-				-3.1
5,458,127	-				+0.2
5,458,127	-				-0.6
5,458,127	-				-0.0
5,458,129	+				-0.4
5,458,130	+				-0.2
5,458,130	+				-2.2
5,458,130	+				+1.5
5,458,130	+				-0.1
5,458,137	-				-1.0
5,458,138	-				-0.4
5,458,138	-				-0.6
5,458,138	-				-0.4
5,458,138	-				+0.6
5,458,138	-				+1.5
5,458,138	-				-1.8
5,458,138	-				+0.9
5,458,138	-				+0.1
5,458,160	+				+1.0
5,458,363	+				+0.0