Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_019530

Experiment: MDC_bicarb with butyrate and Adenine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MDC_bicarb with butyrate and Adenine
4,265,739	+		TX73_019520	0.21	-0.2
4,265,745	+		TX73_019520	0.22	+0.6
4,265,752	-		TX73_019520	0.23	+0.5
4,265,752	-		TX73_019520	0.23	+0.5
4,265,758	-		TX73_019520	0.24	+1.4
4,265,809	+		TX73_019520	0.35	+0.2
4,265,847	+		TX73_019520	0.42	-2.7
4,265,963	+		TX73_019520	0.65	-0.0
4,265,963	+		TX73_019520	0.65	-0.2
4,265,971	-		TX73_019520	0.67	-0.9
4,265,978	-		TX73_019520	0.68	+0.3
4,265,998	-		TX73_019520	0.72	-0.2
4,266,001	+		TX73_019520	0.73	-0.7
4,266,001	+		TX73_019520	0.73	-0.6
4,266,037	+		TX73_019520	0.80	-0.1
4,266,037	-		TX73_019520	0.80	+0.1
4,266,060	+		TX73_019520	0.84	-0.9
4,266,107	+				-0.2
4,266,114	-				+1.4
4,266,114	-				+0.7
4,266,123	-				+0.0
4,266,158	-				-0.0
4,266,160	+				+0.9
4,266,162	+				+0.8
4,266,168	-				+0.9
4,266,170	-				+0.2
4,266,170	-				-0.3
4,266,175	-				+1.2
4,266,178	-				+0.4
4,266,183	-				-1.7
4,266,195	-				+0.5
4,266,348	-				-0.6
4,266,348	-				+0.0
4,266,357	+				-0.4
4,266,360	+				+0.6
4,266,360	+				-1.9
4,266,360	+				+0.9
4,266,365	-				-3.6
4,266,368	-				-2.0
4,266,368	-				-1.2
4,266,387	-		TX73_019525	0.12	-0.6
4,266,407	+		TX73_019525	0.18	+0.3
4,266,431	-		TX73_019525	0.25	-2.7
4,266,431	-		TX73_019525	0.25	-0.9
4,266,438	+		TX73_019525	0.27	+0.1
4,266,472	+		TX73_019525	0.38	+0.3
4,266,490	-		TX73_019525	0.44	-0.1
4,266,533	+		TX73_019525	0.57	+1.3
4,266,563	-		TX73_019525	0.66	-0.1
4,266,608	+		TX73_019525	0.80	-0.1
4,266,684	+				+0.1
4,266,692	-				+0.5
4,266,715	+				-1.5
4,266,725	+				+0.6
4,266,772	+				+0.5
4,266,779	-				+0.2
4,266,783	+				+0.5
4,266,813	+		TX73_019530	0.12	-0.4
4,266,821	-		TX73_019530	0.13	+0.3
4,266,821	-		TX73_019530	0.13	-0.9
4,266,821	-		TX73_019530	0.13	-0.2
4,266,843	-		TX73_019530	0.16	-1.4
4,266,845	+		TX73_019530	0.16	+1.1
4,266,854	+		TX73_019530	0.17	-0.2
4,266,862	-		TX73_019530	0.18	-0.6
4,266,862	-		TX73_019530	0.18	+0.7
4,266,864	+		TX73_019530	0.18	-0.6
4,266,872	-		TX73_019530	0.19	-0.8
4,266,898	+		TX73_019530	0.23	+0.4
4,266,906	-		TX73_019530	0.24	-1.6
4,266,906	-		TX73_019530	0.24	-1.1
4,266,914	+		TX73_019530	0.25	+1.4
4,266,949	-		TX73_019530	0.29	+0.0
4,266,950	+		TX73_019530	0.29	-0.2
4,266,979	-		TX73_019530	0.33	+1.1
4,267,001	-		TX73_019530	0.36	-1.0
4,267,006	-		TX73_019530	0.36	+0.3
4,267,017	+		TX73_019530	0.38	-0.6
4,267,039	+		TX73_019530	0.40	-2.8
4,267,049	+		TX73_019530	0.42	-0.1
4,267,057	-		TX73_019530	0.43	+0.7
4,267,079	+		TX73_019530	0.45	+0.6
4,267,086	+		TX73_019530	0.46	+0.1
4,267,092	-		TX73_019530	0.47	-0.1
4,267,102	-		TX73_019530	0.48	+0.5
4,267,118	-		TX73_019530	0.50	-1.7
4,267,129	+		TX73_019530	0.52	-0.8
4,267,150	+		TX73_019530	0.54	-1.1
4,267,158	-		TX73_019530	0.55	+0.2
4,267,160	-		TX73_019530	0.56	+0.0
4,267,179	-		TX73_019530	0.58	-1.8
4,267,253	+		TX73_019530	0.67	-0.4
4,267,265	+		TX73_019530	0.69	-0.3
4,267,273	+		TX73_019530	0.70	+0.3
4,267,281	-		TX73_019530	0.71	-0.5
4,267,286	-		TX73_019530	0.72	-0.5
4,267,288	+		TX73_019530	0.72	-0.5
4,267,288	+		TX73_019530	0.72	+1.0
4,267,288	+		TX73_019530	0.72	-1.5
4,267,288	+		TX73_019530	0.72	-0.5
4,267,296	-		TX73_019530	0.73	-0.6
4,267,296	-		TX73_019530	0.73	-0.3
4,267,304	+		TX73_019530	0.74	+0.5
4,267,312	-		TX73_019530	0.75	+0.5
4,267,314	+		TX73_019530	0.75	-1.0
4,267,314	+		TX73_019530	0.75	-2.5
4,267,319	-		TX73_019530	0.76	+0.7
4,267,321	+		TX73_019530	0.76	-1.1
4,267,322	-		TX73_019530	0.76	-1.6
4,267,326	+		TX73_019530	0.77	+1.3
4,267,334	-		TX73_019530	0.78	+0.1
4,267,343	-		TX73_019530	0.79	-0.6
4,267,489	-				-0.1
4,267,533	+				-1.1
4,267,539	+				+0.6
4,267,562	-		TX73_019535	0.13	+0.3
4,267,564	-		TX73_019535	0.14	-0.7
4,267,617	-		TX73_019535	0.35	-1.0
4,267,626	-		TX73_019535	0.38	-0.0
4,267,628	-		TX73_019535	0.39	-0.5
4,267,647	-		TX73_019535	0.46	-0.9
4,267,653	+		TX73_019535	0.49	+0.2
4,267,678	-		TX73_019535	0.58	+0.8
4,267,691	-		TX73_019535	0.64	+1.0
4,267,695	+		TX73_019535	0.65	+0.3
4,267,705	+		TX73_019535	0.69	-2.8
4,267,710	+		TX73_019535	0.71	-0.1
4,267,734	-		TX73_019535	0.80	-1.8
4,267,734	-		TX73_019535	0.80	-0.7
4,267,794	-				-0.7
4,267,796	+				-2.7
4,267,796	+				-0.3
4,267,796	-				-0.0
4,267,804	-				-2.8
4,267,804	-				+0.5
4,267,804	-				+0.2
4,267,804	-				+0.3
4,267,834	+				+0.1
4,267,864	+				+0.8
4,267,867	-				-0.6
4,267,890	+				+0.8
4,267,898	-				-0.2
4,267,898	-				+0.1
4,267,898	-				-0.7
4,267,908	-				+0.4
4,267,948	+				-0.8
4,267,951	-				+1.8
4,267,957	-				+0.4
4,268,016	-		TX73_019540	0.11	-0.6
4,268,081	-		TX73_019540	0.17	-0.2
4,268,094	+		TX73_019540	0.18	-0.4
4,268,115	-		TX73_019540	0.19	-1.3
4,268,141	+		TX73_019540	0.21	+0.5
4,268,166	-		TX73_019540	0.23	+1.1
4,268,171	-		TX73_019540	0.24	+0.7
4,268,241	+		TX73_019540	0.29	+0.3
4,268,241	+		TX73_019540	0.29	+0.0
4,268,249	-		TX73_019540	0.30	-0.9
4,268,253	+		TX73_019540	0.30	+0.9
4,268,257	+		TX73_019540	0.31	+0.1
4,268,271	-		TX73_019540	0.32	+0.0
4,268,281	+		TX73_019540	0.32	+0.2
4,268,331	-		TX73_019540	0.36	+0.3
4,268,345	-		TX73_019540	0.38	+0.0
4,268,353	-		TX73_019540	0.38	-1.4
4,268,358	-		TX73_019540	0.39	+0.5
4,268,377	-		TX73_019540	0.40	+0.6
4,268,406	-		TX73_019540	0.42	-0.3
4,268,424	-		TX73_019540	0.44	+0.6
4,268,424	-		TX73_019540	0.44	-1.1
4,268,427	+		TX73_019540	0.44	+0.5
4,268,439	-		TX73_019540	0.45	-0.0
4,268,486	+		TX73_019540	0.49	+0.4
4,268,502	+		TX73_019540	0.50	-1.2
4,268,509	-		TX73_019540	0.51	-0.2
4,268,509	-		TX73_019540	0.51	+0.6
4,268,510	-		TX73_019540	0.51	-0.5
4,268,510	-		TX73_019540	0.51	+0.6