Experiment: MDC_bicarb with butyrate and Adenine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_003330 and TX73_003335 are separated by 95 nucleotides TX73_003335 and TX73_003340 are separated by 377 nucleotides TX73_003340 and TX73_003345 are separated by 19 nucleotides
TX73_003330: TX73_003330 - flagellar protein FliS, at 711,259 to 711,651
_003330
TX73_003335: TX73_003335 - hypothetical protein, at 711,747 to 712,046
_003335
TX73_003340: TX73_003340 - FlgD immunoglobulin-like domain containing protein, at 712,424 to 713,092
_003340
TX73_003345: TX73_003345 - flagellar hook protein FlgE, at 713,112 to 714,377
_003345
Position (kb) 712
713
714 Strain fitness (log2 ratio) -2
-1
0
1 at 711.428 kb on - strand, within TX73_003330 at 711.432 kb on - strand, within TX73_003330 at 711.463 kb on - strand, within TX73_003330 at 711.504 kb on + strand, within TX73_003330 at 711.554 kb on - strand, within TX73_003330 at 711.614 kb on + strand at 711.624 kb on - strand at 711.738 kb on - strand at 711.745 kb on + strand at 711.745 kb on + strand at 711.745 kb on + strand at 711.753 kb on - strand at 711.768 kb on + strand at 711.826 kb on - strand, within TX73_003335 at 711.874 kb on - strand, within TX73_003335 at 711.878 kb on + strand, within TX73_003335 at 711.881 kb on - strand, within TX73_003335 at 711.987 kb on - strand, within TX73_003335 at 712.017 kb on + strand at 712.086 kb on + strand at 712.292 kb on + strand at 712.337 kb on - strand at 712.385 kb on + strand at 712.473 kb on - strand at 712.796 kb on - strand, within TX73_003340 at 712.855 kb on - strand, within TX73_003340 at 712.922 kb on + strand, within TX73_003340 at 712.922 kb on + strand, within TX73_003340 at 712.934 kb on + strand, within TX73_003340 at 712.982 kb on - strand, within TX73_003340 at 713.015 kb on + strand, within TX73_003340 at 713.036 kb on - strand at 713.164 kb on + strand at 713.256 kb on + strand, within TX73_003345 at 713.560 kb on + strand, within TX73_003345 at 713.675 kb on - strand, within TX73_003345 at 713.711 kb on + strand, within TX73_003345 at 713.719 kb on - strand, within TX73_003345 at 713.719 kb on - strand, within TX73_003345 at 714.029 kb on + strand, within TX73_003345
Per-strain Table
Position Strand Gene LocusTag Fraction MDC_bicarb with butyrate and Adenine remove 711,428 - TX73_003330 0.43 -1.0 711,432 - TX73_003330 0.44 -1.2 711,463 - TX73_003330 0.52 +0.2 711,504 + TX73_003330 0.62 +1.7 711,554 - TX73_003330 0.75 -0.2 711,614 + -0.5 711,624 - -0.3 711,738 - -2.2 711,745 + -0.5 711,745 + -1.5 711,745 + +0.9 711,753 - -2.5 711,768 + -0.7 711,826 - TX73_003335 0.26 +0.5 711,874 - TX73_003335 0.42 +0.7 711,878 + TX73_003335 0.44 -0.5 711,881 - TX73_003335 0.45 +0.6 711,987 - TX73_003335 0.80 -0.2 712,017 + -0.9 712,086 + -0.9 712,292 + -0.9 712,337 - -0.2 712,385 + +0.5 712,473 - +0.3 712,796 - TX73_003340 0.56 +0.8 712,855 - TX73_003340 0.64 -0.0 712,922 + TX73_003340 0.74 -2.2 712,922 + TX73_003340 0.74 -0.3 712,934 + TX73_003340 0.76 +0.6 712,982 - TX73_003340 0.83 -0.8 713,015 + TX73_003340 0.88 +0.1 713,036 - +0.8 713,164 + +0.7 713,256 + TX73_003345 0.11 -0.8 713,560 + TX73_003345 0.35 -0.3 713,675 - TX73_003345 0.44 -0.1 713,711 + TX73_003345 0.47 -1.2 713,719 - TX73_003345 0.48 +0.4 713,719 - TX73_003345 0.48 -0.2 714,029 + TX73_003345 0.72 +0.1
Or see this region's nucleotide sequence