Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_002560

Experiment: MDC_bicarb with butyrate and Adenine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_002555 and TX73_002560 are separated by 300 nucleotidesTX73_002560 and TX73_002565 are separated by 324 nucleotides TX73_002555: TX73_002555 - DUF3108 domain-containing protein, at 544,995 to 545,867 _002555 TX73_002560: TX73_002560 - 50S ribosomal protein L28, at 546,168 to 546,473 _002560 TX73_002565: TX73_002565 - PAS domain S-box protein, at 546,798 to 550,043 _002565 Position (kb) 546 547Strain fitness (log2 ratio) -3 -2 -1 0 1at 545.186 kb on + strand, within TX73_002555at 545.204 kb on + strand, within TX73_002555at 545.208 kb on + strand, within TX73_002555at 545.208 kb on + strand, within TX73_002555at 545.208 kb on + strand, within TX73_002555at 545.208 kb on + strand, within TX73_002555at 545.216 kb on - strand, within TX73_002555at 545.216 kb on - strand, within TX73_002555at 545.216 kb on - strand, within TX73_002555at 545.218 kb on + strand, within TX73_002555at 545.218 kb on + strand, within TX73_002555at 545.218 kb on + strand, within TX73_002555at 545.218 kb on + strand, within TX73_002555at 545.218 kb on + strand, within TX73_002555at 545.218 kb on + strand, within TX73_002555at 545.218 kb on + strand, within TX73_002555at 545.218 kb on + strand, within TX73_002555at 545.218 kb on + strand, within TX73_002555at 545.223 kb on + strand, within TX73_002555at 545.223 kb on + strand, within TX73_002555at 545.223 kb on + strand, within TX73_002555at 545.223 kb on + strand, within TX73_002555at 545.223 kb on + strand, within TX73_002555at 545.226 kb on - strand, within TX73_002555at 545.226 kb on - strand, within TX73_002555at 545.226 kb on - strand, within TX73_002555at 545.226 kb on - strand, within TX73_002555at 545.231 kb on - strand, within TX73_002555at 545.231 kb on - strand, within TX73_002555at 545.236 kb on - strand, within TX73_002555at 545.263 kb on + strand, within TX73_002555at 545.271 kb on - strand, within TX73_002555at 545.282 kb on - strand, within TX73_002555at 545.282 kb on - strand, within TX73_002555at 545.282 kb on - strand, within TX73_002555at 545.291 kb on + strand, within TX73_002555at 545.296 kb on + strand, within TX73_002555at 545.301 kb on + strand, within TX73_002555at 545.339 kb on + strand, within TX73_002555at 545.339 kb on + strand, within TX73_002555at 545.339 kb on + strand, within TX73_002555at 545.339 kb on + strand, within TX73_002555at 545.339 kb on + strand, within TX73_002555at 545.339 kb on + strand, within TX73_002555at 545.347 kb on - strand, within TX73_002555at 545.348 kb on - strand, within TX73_002555at 545.365 kb on - strand, within TX73_002555at 545.370 kb on - strand, within TX73_002555at 545.386 kb on - strand, within TX73_002555at 545.386 kb on - strand, within TX73_002555at 545.409 kb on + strand, within TX73_002555at 545.419 kb on + strand, within TX73_002555at 545.424 kb on + strand, within TX73_002555at 545.464 kb on - strand, within TX73_002555at 545.467 kb on + strand, within TX73_002555at 545.467 kb on + strand, within TX73_002555at 545.467 kb on + strand, within TX73_002555at 545.467 kb on + strand, within TX73_002555at 545.467 kb on + strand, within TX73_002555at 545.467 kb on + strand, within TX73_002555at 545.475 kb on - strand, within TX73_002555at 545.475 kb on - strand, within TX73_002555at 545.475 kb on - strand, within TX73_002555at 545.475 kb on - strand, within TX73_002555at 545.483 kb on - strand, within TX73_002555at 545.484 kb on - strand, within TX73_002555at 545.485 kb on - strand, within TX73_002555at 545.490 kb on - strand, within TX73_002555at 545.512 kb on + strand, within TX73_002555at 545.512 kb on + strand, within TX73_002555at 545.520 kb on - strand, within TX73_002555at 545.520 kb on - strand, within TX73_002555at 545.557 kb on + strand, within TX73_002555at 545.578 kb on + strand, within TX73_002555at 545.583 kb on + strand, within TX73_002555at 545.583 kb on + strand, within TX73_002555at 545.583 kb on + strand, within TX73_002555at 545.583 kb on + strand, within TX73_002555at 545.583 kb on + strand, within TX73_002555at 545.583 kb on + strand, within TX73_002555at 545.583 kb on + strand, within TX73_002555at 545.591 kb on - strand, within TX73_002555at 545.591 kb on - strand, within TX73_002555at 545.591 kb on - strand, within TX73_002555at 545.591 kb on - strand, within TX73_002555at 545.591 kb on - strand, within TX73_002555at 545.591 kb on - strand, within TX73_002555at 545.591 kb on - strand, within TX73_002555at 545.591 kb on - strand, within TX73_002555at 545.591 kb on - strand, within TX73_002555at 545.591 kb on - strand, within TX73_002555at 545.601 kb on + strand, within TX73_002555at 545.609 kb on - strand, within TX73_002555at 545.645 kb on - strand, within TX73_002555at 545.676 kb on + strand, within TX73_002555at 545.677 kb on + strand, within TX73_002555at 545.681 kb on + strand, within TX73_002555at 545.685 kb on - strand, within TX73_002555at 545.689 kb on - strand, within TX73_002555at 545.689 kb on - strand, within TX73_002555at 545.705 kb on + strand, within TX73_002555at 545.705 kb on + strand, within TX73_002555at 545.725 kb on + strand, within TX73_002555at 545.733 kb on - strand, within TX73_002555at 545.733 kb on - strand, within TX73_002555at 545.733 kb on - strand, within TX73_002555at 545.733 kb on - strand, within TX73_002555at 545.733 kb on - strand, within TX73_002555at 545.743 kb on + strand, within TX73_002555at 545.743 kb on + strand, within TX73_002555at 545.748 kb on + strand, within TX73_002555at 545.757 kb on + strand, within TX73_002555at 545.762 kb on - strand, within TX73_002555at 545.764 kb on + strand, within TX73_002555at 545.764 kb on + strand, within TX73_002555at 545.766 kb on - strand, within TX73_002555at 545.767 kb on - strand, within TX73_002555at 545.770 kb on + strand, within TX73_002555at 545.770 kb on + strand, within TX73_002555at 545.770 kb on + strand, within TX73_002555at 545.772 kb on + strand, within TX73_002555at 545.772 kb on + strand, within TX73_002555at 545.772 kb on - strand, within TX73_002555at 545.778 kb on - strand, within TX73_002555at 545.780 kb on - strandat 545.780 kb on - strandat 545.780 kb on - strandat 545.790 kb on + strandat 545.793 kb on + strandat 545.797 kb on + strandat 545.802 kb on + strandat 545.802 kb on + strandat 545.810 kb on - strandat 545.810 kb on - strandat 545.825 kb on + strandat 545.844 kb on - strandat 545.854 kb on + strandat 545.875 kb on + strandat 545.875 kb on + strandat 545.880 kb on + strandat 545.886 kb on + strandat 545.912 kb on - strandat 545.918 kb on + strandat 545.951 kb on + strandat 545.951 kb on + strandat 545.959 kb on - strandat 545.982 kb on + strandat 545.990 kb on - strandat 546.007 kb on + strandat 546.015 kb on - strandat 546.017 kb on + strandat 546.048 kb on - strandat 546.064 kb on - strandat 546.064 kb on - strandat 546.064 kb on - strandat 546.440 kb on - strand, within TX73_002560at 546.472 kb on + strandat 546.542 kb on - strandat 546.546 kb on + strandat 546.556 kb on + strandat 546.563 kb on - strandat 546.565 kb on + strandat 546.565 kb on + strandat 546.573 kb on - strandat 546.590 kb on - strandat 546.628 kb on + strandat 546.631 kb on + strandat 546.637 kb on - strandat 546.701 kb on + strandat 546.713 kb on - strandat 546.713 kb on - strandat 546.714 kb on + strandat 546.732 kb on - strandat 546.734 kb on + strandat 546.736 kb on + strandat 546.744 kb on - strandat 546.744 kb on - strandat 546.744 kb on - strandat 546.744 kb on - strandat 546.772 kb on + strandat 546.787 kb on - strandat 546.819 kb on + strandat 546.834 kb on - strandat 546.837 kb on - strandat 546.840 kb on + strandat 546.868 kb on - strandat 546.920 kb on + strandat 546.933 kb on + strandat 546.938 kb on + strandat 546.953 kb on + strandat 546.976 kb on - strandat 546.976 kb on - strandat 547.019 kb on - strandat 547.023 kb on + strandat 547.025 kb on + strandat 547.025 kb on + strandat 547.044 kb on + strandat 547.047 kb on + strandat 547.047 kb on + strandat 547.132 kb on + strand, within TX73_002565at 547.161 kb on - strand, within TX73_002565at 547.176 kb on - strand, within TX73_002565at 547.186 kb on - strand, within TX73_002565at 547.186 kb on - strand, within TX73_002565at 547.272 kb on + strand, within TX73_002565at 547.319 kb on + strand, within TX73_002565at 547.369 kb on + strand, within TX73_002565at 547.369 kb on + strand, within TX73_002565at 547.369 kb on + strand, within TX73_002565at 547.370 kb on - strand, within TX73_002565at 547.377 kb on - strand, within TX73_002565at 547.407 kb on + strand, within TX73_002565at 547.423 kb on + strand, within TX73_002565at 547.438 kb on - strand, within TX73_002565at 547.442 kb on + strand, within TX73_002565at 547.446 kb on - strand, within TX73_002565at 547.446 kb on - strand, within TX73_002565

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Per-strain Table

Position Strand Gene LocusTag Fraction MDC_bicarb with butyrate and Adenine
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545,186 + TX73_002555 0.22 -0.6
545,204 + TX73_002555 0.24 +1.2
545,208 + TX73_002555 0.24 -0.3
545,208 + TX73_002555 0.24 +0.0
545,208 + TX73_002555 0.24 -1.1
545,208 + TX73_002555 0.24 -0.7
545,216 - TX73_002555 0.25 -0.5
545,216 - TX73_002555 0.25 +1.4
545,216 - TX73_002555 0.25 +0.7
545,218 + TX73_002555 0.26 +0.3
545,218 + TX73_002555 0.26 -0.4
545,218 + TX73_002555 0.26 +0.0
545,218 + TX73_002555 0.26 -0.7
545,218 + TX73_002555 0.26 +1.0
545,218 + TX73_002555 0.26 +0.6
545,218 + TX73_002555 0.26 +1.4
545,218 + TX73_002555 0.26 +0.6
545,218 + TX73_002555 0.26 +1.4
545,223 + TX73_002555 0.26 -0.4
545,223 + TX73_002555 0.26 +0.4
545,223 + TX73_002555 0.26 -0.0
545,223 + TX73_002555 0.26 -1.3
545,223 + TX73_002555 0.26 +0.5
545,226 - TX73_002555 0.26 -1.3
545,226 - TX73_002555 0.26 +1.0
545,226 - TX73_002555 0.26 +0.4
545,226 - TX73_002555 0.26 -2.3
545,231 - TX73_002555 0.27 -2.0
545,231 - TX73_002555 0.27 -1.4
545,236 - TX73_002555 0.28 -1.1
545,263 + TX73_002555 0.31 +0.7
545,271 - TX73_002555 0.32 -0.9
545,282 - TX73_002555 0.33 -0.7
545,282 - TX73_002555 0.33 +1.6
545,282 - TX73_002555 0.33 +0.1
545,291 + TX73_002555 0.34 -0.3
545,296 + TX73_002555 0.34 +1.0
545,301 + TX73_002555 0.35 +0.4
545,339 + TX73_002555 0.39 -0.4
545,339 + TX73_002555 0.39 -0.6
545,339 + TX73_002555 0.39 -0.9
545,339 + TX73_002555 0.39 +0.7
545,339 + TX73_002555 0.39 +0.4
545,339 + TX73_002555 0.39 +0.2
545,347 - TX73_002555 0.40 +0.2
545,348 - TX73_002555 0.40 -2.6
545,365 - TX73_002555 0.42 +0.6
545,370 - TX73_002555 0.43 +0.5
545,386 - TX73_002555 0.45 +0.0
545,386 - TX73_002555 0.45 -1.9
545,409 + TX73_002555 0.47 +0.0
545,419 + TX73_002555 0.49 +1.4
545,424 + TX73_002555 0.49 +0.6
545,464 - TX73_002555 0.54 -0.4
545,467 + TX73_002555 0.54 +1.3
545,467 + TX73_002555 0.54 -0.2
545,467 + TX73_002555 0.54 -0.8
545,467 + TX73_002555 0.54 +1.6
545,467 + TX73_002555 0.54 -0.0
545,467 + TX73_002555 0.54 +0.2
545,475 - TX73_002555 0.55 -0.3
545,475 - TX73_002555 0.55 +0.9
545,475 - TX73_002555 0.55 -1.7
545,475 - TX73_002555 0.55 +0.4
545,483 - TX73_002555 0.56 -0.4
545,484 - TX73_002555 0.56 +0.4
545,485 - TX73_002555 0.56 +0.5
545,490 - TX73_002555 0.57 +0.1
545,512 + TX73_002555 0.59 +0.9
545,512 + TX73_002555 0.59 -1.8
545,520 - TX73_002555 0.60 +0.9
545,520 - TX73_002555 0.60 +0.7
545,557 + TX73_002555 0.64 -0.2
545,578 + TX73_002555 0.67 -0.3
545,583 + TX73_002555 0.67 -2.0
545,583 + TX73_002555 0.67 +0.1
545,583 + TX73_002555 0.67 -0.6
545,583 + TX73_002555 0.67 -0.0
545,583 + TX73_002555 0.67 +1.1
545,583 + TX73_002555 0.67 +0.3
545,583 + TX73_002555 0.67 -2.6
545,591 - TX73_002555 0.68 +0.2
545,591 - TX73_002555 0.68 +0.7
545,591 - TX73_002555 0.68 -0.7
545,591 - TX73_002555 0.68 +0.1
545,591 - TX73_002555 0.68 -1.1
545,591 - TX73_002555 0.68 -0.2
545,591 - TX73_002555 0.68 +0.0
545,591 - TX73_002555 0.68 +0.0
545,591 - TX73_002555 0.68 +0.2
545,591 - TX73_002555 0.68 -0.6
545,601 + TX73_002555 0.69 -0.4
545,609 - TX73_002555 0.70 +1.0
545,645 - TX73_002555 0.74 -0.2
545,676 + TX73_002555 0.78 +0.0
545,677 + TX73_002555 0.78 +0.6
545,681 + TX73_002555 0.79 -0.9
545,685 - TX73_002555 0.79 -0.3
545,689 - TX73_002555 0.79 -0.6
545,689 - TX73_002555 0.79 -1.4
545,705 + TX73_002555 0.81 +0.1
545,705 + TX73_002555 0.81 +0.2
545,725 + TX73_002555 0.84 -0.6
545,733 - TX73_002555 0.85 +1.4
545,733 - TX73_002555 0.85 +0.5
545,733 - TX73_002555 0.85 -1.8
545,733 - TX73_002555 0.85 -0.3
545,733 - TX73_002555 0.85 -0.1
545,743 + TX73_002555 0.86 -0.5
545,743 + TX73_002555 0.86 +0.2
545,748 + TX73_002555 0.86 +0.3
545,757 + TX73_002555 0.87 -0.3
545,762 - TX73_002555 0.88 -1.6
545,764 + TX73_002555 0.88 -0.9
545,764 + TX73_002555 0.88 -1.6
545,766 - TX73_002555 0.88 +0.7
545,767 - TX73_002555 0.88 -1.0
545,770 + TX73_002555 0.89 +0.9
545,770 + TX73_002555 0.89 +0.5
545,770 + TX73_002555 0.89 -0.7
545,772 + TX73_002555 0.89 -1.0
545,772 + TX73_002555 0.89 +0.3
545,772 - TX73_002555 0.89 +0.4
545,778 - TX73_002555 0.90 -1.0
545,780 - -2.5
545,780 - +0.6
545,780 - +1.0
545,790 + -0.1
545,793 + +0.8
545,797 + +0.2
545,802 + -0.2
545,802 + +0.4
545,810 - -0.0
545,810 - +0.4
545,825 + -2.2
545,844 - -1.4
545,854 + -0.3
545,875 + -0.1
545,875 + +0.7
545,880 + +0.0
545,886 + +0.4
545,912 - +0.7
545,918 + -0.1
545,951 + +0.2
545,951 + +1.3
545,959 - +0.6
545,982 + +0.1
545,990 - -2.3
546,007 + -0.2
546,015 - +0.5
546,017 + +0.5
546,048 - -0.3
546,064 - -1.0
546,064 - +0.4
546,064 - -1.5
546,440 - TX73_002560 0.89 -0.9
546,472 + +0.4
546,542 - -2.3
546,546 + +0.0
546,556 + -3.2
546,563 - +0.7
546,565 + +0.8
546,565 + +0.2
546,573 - +0.2
546,590 - +0.9
546,628 + +0.4
546,631 + -0.2
546,637 - -1.1
546,701 + +1.1
546,713 - +0.4
546,713 - +0.7
546,714 + +0.4
546,732 - -0.5
546,734 + -0.6
546,736 + -0.3
546,744 - +1.2
546,744 - +1.7
546,744 - +0.7
546,744 - +0.6
546,772 + +0.5
546,787 - -0.5
546,819 + -0.1
546,834 - -0.4
546,837 - +0.0
546,840 + +0.5
546,868 - -0.6
546,920 + -0.4
546,933 + -0.4
546,938 + +0.8
546,953 + +0.0
546,976 - +0.4
546,976 - -0.0
547,019 - +0.4
547,023 + +0.1
547,025 + -0.2
547,025 + -1.3
547,044 + +0.2
547,047 + +0.4
547,047 + -0.6
547,132 + TX73_002565 0.10 -0.8
547,161 - TX73_002565 0.11 -0.3
547,176 - TX73_002565 0.12 -1.0
547,186 - TX73_002565 0.12 -0.8
547,186 - TX73_002565 0.12 -0.1
547,272 + TX73_002565 0.15 -1.1
547,319 + TX73_002565 0.16 +0.9
547,369 + TX73_002565 0.18 -0.8
547,369 + TX73_002565 0.18 +0.2
547,369 + TX73_002565 0.18 -1.5
547,370 - TX73_002565 0.18 -0.5
547,377 - TX73_002565 0.18 -0.2
547,407 + TX73_002565 0.19 -1.3
547,423 + TX73_002565 0.19 +0.8
547,438 - TX73_002565 0.20 -1.5
547,442 + TX73_002565 0.20 -1.1
547,446 - TX73_002565 0.20 +0.1
547,446 - TX73_002565 0.20 -0.2

Or see this region's nucleotide sequence