Experiment: MDC_bicarb with butyrate and Adenine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_024165 and TX73_024170 are separated by 81 nucleotides TX73_024170 and TX73_024175 are separated by 30 nucleotides TX73_024175 and TX73_024180 are separated by 46 nucleotides TX73_024180 and TX73_024185 are separated by 32 nucleotides
TX73_024165: TX73_024165 - peroxidase-related enzyme, at 5,241,209 to 5,241,778
_024165
TX73_024170: TX73_024170 - L-fuculose-phosphate aldolase, at 5,241,860 to 5,242,546
_024170
TX73_024175: TX73_024175 - sugar kinase, at 5,242,577 to 5,243,536
_024175
TX73_024180: TX73_024180 - 3-oxoacyl-ACP reductase FabG, at 5,243,583 to 5,244,329
_024180
TX73_024185: TX73_024185 - oxidoreductase, at 5,244,362 to 5,245,348
_024185
Position (kb) 5242
5243
5244 Strain fitness (log2 ratio) -2
-1
0
1 at 5241.673 kb on + strand, within TX73_024165 at 5241.676 kb on - strand, within TX73_024165 at 5241.695 kb on + strand, within TX73_024165 at 5241.765 kb on - strand at 5241.849 kb on - strand at 5241.884 kb on - strand at 5241.960 kb on + strand, within TX73_024170 at 5242.020 kb on - strand, within TX73_024170 at 5242.044 kb on - strand, within TX73_024170 at 5242.060 kb on + strand, within TX73_024170 at 5242.060 kb on + strand, within TX73_024170 at 5242.060 kb on + strand, within TX73_024170 at 5242.095 kb on - strand, within TX73_024170 at 5242.187 kb on + strand, within TX73_024170 at 5242.195 kb on - strand, within TX73_024170 at 5242.195 kb on - strand, within TX73_024170 at 5242.195 kb on - strand, within TX73_024170 at 5242.387 kb on - strand, within TX73_024170 at 5242.451 kb on - strand, within TX73_024170 at 5242.518 kb on - strand at 5242.567 kb on + strand at 5242.569 kb on - strand at 5242.583 kb on - strand at 5242.588 kb on - strand at 5242.593 kb on + strand at 5242.610 kb on + strand at 5242.611 kb on + strand at 5242.688 kb on + strand, within TX73_024175 at 5243.038 kb on - strand, within TX73_024175 at 5243.142 kb on - strand, within TX73_024175 at 5243.182 kb on + strand, within TX73_024175 at 5243.182 kb on + strand, within TX73_024175 at 5243.261 kb on + strand, within TX73_024175 at 5243.399 kb on + strand, within TX73_024175 at 5243.399 kb on + strand, within TX73_024175 at 5243.399 kb on + strand, within TX73_024175 at 5243.399 kb on + strand, within TX73_024175 at 5243.407 kb on - strand, within TX73_024175 at 5243.450 kb on + strand at 5243.458 kb on - strand at 5243.525 kb on + strand at 5243.530 kb on + strand at 5243.644 kb on + strand at 5243.644 kb on + strand at 5243.652 kb on - strand at 5243.652 kb on - strand at 5243.652 kb on - strand at 5243.673 kb on - strand, within TX73_024180 at 5243.693 kb on + strand, within TX73_024180 at 5243.699 kb on - strand, within TX73_024180 at 5243.705 kb on + strand, within TX73_024180 at 5243.891 kb on + strand, within TX73_024180 at 5243.898 kb on + strand, within TX73_024180 at 5243.928 kb on + strand, within TX73_024180 at 5243.967 kb on - strand, within TX73_024180 at 5243.968 kb on - strand, within TX73_024180 at 5244.030 kb on - strand, within TX73_024180 at 5244.104 kb on + strand, within TX73_024180 at 5244.141 kb on - strand, within TX73_024180 at 5244.180 kb on - strand, within TX73_024180 at 5244.262 kb on + strand at 5244.342 kb on + strand at 5244.352 kb on - strand at 5244.370 kb on + strand at 5244.370 kb on + strand at 5244.370 kb on + strand at 5244.370 kb on + strand at 5244.370 kb on + strand at 5244.378 kb on - strand at 5244.378 kb on - strand at 5244.419 kb on - strand at 5244.501 kb on + strand, within TX73_024185
Per-strain Table
Position Strand Gene LocusTag Fraction MDC_bicarb with butyrate and Adenine remove 5,241,673 + TX73_024165 0.81 -0.9 5,241,676 - TX73_024165 0.82 +1.0 5,241,695 + TX73_024165 0.85 +0.7 5,241,765 - +0.8 5,241,849 - -0.5 5,241,884 - +0.2 5,241,960 + TX73_024170 0.15 -0.2 5,242,020 - TX73_024170 0.23 -1.0 5,242,044 - TX73_024170 0.27 +0.9 5,242,060 + TX73_024170 0.29 +0.3 5,242,060 + TX73_024170 0.29 -0.3 5,242,060 + TX73_024170 0.29 -0.2 5,242,095 - TX73_024170 0.34 -1.4 5,242,187 + TX73_024170 0.48 -0.0 5,242,195 - TX73_024170 0.49 -0.2 5,242,195 - TX73_024170 0.49 -1.1 5,242,195 - TX73_024170 0.49 -0.8 5,242,387 - TX73_024170 0.77 +1.0 5,242,451 - TX73_024170 0.86 -1.5 5,242,518 - -0.8 5,242,567 + -1.8 5,242,569 - -2.0 5,242,583 - +0.4 5,242,588 - +0.2 5,242,593 + +0.8 5,242,610 + +0.2 5,242,611 + +0.9 5,242,688 + TX73_024175 0.12 +0.9 5,243,038 - TX73_024175 0.48 +0.3 5,243,142 - TX73_024175 0.59 -0.4 5,243,182 + TX73_024175 0.63 +1.1 5,243,182 + TX73_024175 0.63 +0.1 5,243,261 + TX73_024175 0.71 -0.5 5,243,399 + TX73_024175 0.86 +0.5 5,243,399 + TX73_024175 0.86 +0.3 5,243,399 + TX73_024175 0.86 +0.5 5,243,399 + TX73_024175 0.86 +0.3 5,243,407 - TX73_024175 0.86 +0.8 5,243,450 + -0.1 5,243,458 - -1.0 5,243,525 + +0.2 5,243,530 + -0.8 5,243,644 + +0.2 5,243,644 + -1.2 5,243,652 - +0.6 5,243,652 - +1.2 5,243,652 - -1.3 5,243,673 - TX73_024180 0.12 +0.6 5,243,693 + TX73_024180 0.15 -1.0 5,243,699 - TX73_024180 0.16 +1.0 5,243,705 + TX73_024180 0.16 -1.1 5,243,891 + TX73_024180 0.41 -0.5 5,243,898 + TX73_024180 0.42 +0.9 5,243,928 + TX73_024180 0.46 +1.3 5,243,967 - TX73_024180 0.51 -0.5 5,243,968 - TX73_024180 0.52 -0.4 5,244,030 - TX73_024180 0.60 -0.1 5,244,104 + TX73_024180 0.70 -0.3 5,244,141 - TX73_024180 0.75 +0.5 5,244,180 - TX73_024180 0.80 -0.7 5,244,262 + +1.3 5,244,342 + -0.3 5,244,352 - +0.2 5,244,370 + +0.9 5,244,370 + -0.3 5,244,370 + +0.4 5,244,370 + +0.2 5,244,370 + -0.8 5,244,378 - -0.4 5,244,378 - +0.5 5,244,419 - +0.3 5,244,501 + TX73_024185 0.14 +0.9
Or see this region's nucleotide sequence