Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_024160

Experiment: MDC_bicarb with butyrate and Adenine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_024150 and TX73_024155 overlap by 1 nucleotidesTX73_024155 and TX73_024160 are separated by 32 nucleotidesTX73_024160 and TX73_024165 are separated by 16 nucleotidesTX73_024165 and TX73_024170 are separated by 81 nucleotides TX73_024150: TX73_024150 - CoA synthetase, at 5,237,277 to 5,238,083 _024150 TX73_024155: TX73_024155 - CoA synthetase, at 5,238,083 to 5,238,850 _024155 TX73_024160: TX73_024160 - molybdopterin-dependent oxidoreductase, at 5,238,883 to 5,241,192 _024160 TX73_024165: TX73_024165 - peroxidase-related enzyme, at 5,241,209 to 5,241,778 _024165 TX73_024170: TX73_024170 - L-fuculose-phosphate aldolase, at 5,241,860 to 5,242,546 _024170 Position (kb) 5238 5239 5240 5241 5242Strain fitness (log2 ratio) -2 -1 0 1 2at 5237.894 kb on - strand, within TX73_024150at 5237.960 kb on + strand, within TX73_024150at 5237.960 kb on + strand, within TX73_024150at 5237.968 kb on - strand, within TX73_024150at 5237.968 kb on - strand, within TX73_024150at 5237.995 kb on + strand, within TX73_024150at 5238.041 kb on - strandat 5238.076 kb on - strandat 5238.087 kb on - strandat 5238.115 kb on - strandat 5238.311 kb on + strand, within TX73_024155at 5238.314 kb on - strand, within TX73_024155at 5238.319 kb on - strand, within TX73_024155at 5238.319 kb on - strand, within TX73_024155at 5238.319 kb on - strand, within TX73_024155at 5238.350 kb on - strand, within TX73_024155at 5238.387 kb on - strand, within TX73_024155at 5238.445 kb on + strand, within TX73_024155at 5238.445 kb on + strand, within TX73_024155at 5238.453 kb on - strand, within TX73_024155at 5238.453 kb on - strand, within TX73_024155at 5238.467 kb on + strand, within TX73_024155at 5238.538 kb on + strand, within TX73_024155at 5238.586 kb on - strand, within TX73_024155at 5238.588 kb on + strand, within TX73_024155at 5238.598 kb on + strand, within TX73_024155at 5238.684 kb on + strand, within TX73_024155at 5238.749 kb on - strand, within TX73_024155at 5238.787 kb on - strandat 5238.844 kb on + strandat 5238.886 kb on + strandat 5238.909 kb on - strandat 5238.926 kb on + strandat 5238.926 kb on + strandat 5238.934 kb on - strandat 5238.948 kb on - strandat 5239.012 kb on + strandat 5239.012 kb on + strandat 5239.012 kb on + strandat 5239.020 kb on - strandat 5239.031 kb on - strandat 5239.043 kb on - strandat 5239.056 kb on + strandat 5239.082 kb on - strandat 5239.138 kb on + strand, within TX73_024160at 5239.215 kb on + strand, within TX73_024160at 5239.361 kb on + strand, within TX73_024160at 5239.411 kb on - strand, within TX73_024160at 5239.439 kb on + strand, within TX73_024160at 5239.446 kb on + strand, within TX73_024160at 5239.456 kb on + strand, within TX73_024160at 5239.480 kb on + strand, within TX73_024160at 5239.488 kb on - strand, within TX73_024160at 5239.542 kb on + strand, within TX73_024160at 5239.665 kb on - strand, within TX73_024160at 5239.667 kb on + strand, within TX73_024160at 5239.700 kb on + strand, within TX73_024160at 5239.731 kb on + strand, within TX73_024160at 5239.818 kb on + strand, within TX73_024160at 5239.827 kb on - strand, within TX73_024160at 5239.909 kb on - strand, within TX73_024160at 5239.909 kb on - strand, within TX73_024160at 5239.955 kb on + strand, within TX73_024160at 5240.089 kb on + strand, within TX73_024160at 5240.097 kb on - strand, within TX73_024160at 5240.109 kb on + strand, within TX73_024160at 5240.118 kb on - strand, within TX73_024160at 5240.144 kb on - strand, within TX73_024160at 5240.464 kb on + strand, within TX73_024160at 5240.510 kb on + strand, within TX73_024160at 5240.555 kb on - strand, within TX73_024160at 5240.595 kb on + strand, within TX73_024160at 5240.620 kb on - strand, within TX73_024160at 5240.622 kb on + strand, within TX73_024160at 5240.639 kb on + strand, within TX73_024160at 5240.678 kb on + strand, within TX73_024160at 5240.678 kb on + strand, within TX73_024160at 5240.703 kb on + strand, within TX73_024160at 5240.733 kb on - strand, within TX73_024160at 5240.765 kb on + strand, within TX73_024160at 5240.790 kb on - strand, within TX73_024160at 5240.847 kb on + strand, within TX73_024160at 5240.860 kb on - strand, within TX73_024160at 5240.900 kb on - strand, within TX73_024160at 5240.915 kb on - strand, within TX73_024160at 5240.963 kb on + strandat 5240.979 kb on - strandat 5240.980 kb on + strandat 5240.980 kb on - strandat 5240.996 kb on + strandat 5241.004 kb on - strandat 5241.020 kb on + strandat 5241.068 kb on - strandat 5241.079 kb on + strandat 5241.087 kb on - strandat 5241.087 kb on - strandat 5241.089 kb on + strandat 5241.092 kb on - strandat 5241.094 kb on + strandat 5241.094 kb on + strandat 5241.097 kb on - strandat 5241.099 kb on + strandat 5241.101 kb on + strandat 5241.102 kb on - strandat 5241.102 kb on - strandat 5241.106 kb on - strandat 5241.126 kb on - strandat 5241.146 kb on - strandat 5241.290 kb on + strand, within TX73_024165at 5241.290 kb on + strand, within TX73_024165at 5241.293 kb on + strand, within TX73_024165at 5241.298 kb on - strand, within TX73_024165at 5241.391 kb on - strand, within TX73_024165at 5241.401 kb on - strand, within TX73_024165at 5241.414 kb on - strand, within TX73_024165at 5241.434 kb on + strand, within TX73_024165at 5241.447 kb on + strand, within TX73_024165at 5241.447 kb on + strand, within TX73_024165at 5241.457 kb on - strand, within TX73_024165at 5241.473 kb on + strand, within TX73_024165at 5241.569 kb on - strand, within TX73_024165at 5241.569 kb on - strand, within TX73_024165at 5241.569 kb on - strand, within TX73_024165at 5241.673 kb on + strand, within TX73_024165at 5241.676 kb on - strand, within TX73_024165at 5241.695 kb on + strand, within TX73_024165at 5241.765 kb on - strandat 5241.849 kb on - strandat 5241.884 kb on - strandat 5241.960 kb on + strand, within TX73_024170at 5242.020 kb on - strand, within TX73_024170at 5242.044 kb on - strand, within TX73_024170at 5242.060 kb on + strand, within TX73_024170at 5242.060 kb on + strand, within TX73_024170at 5242.060 kb on + strand, within TX73_024170at 5242.095 kb on - strand, within TX73_024170at 5242.187 kb on + strand, within TX73_024170

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Per-strain Table

Position Strand Gene LocusTag Fraction MDC_bicarb with butyrate and Adenine
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5,237,894 - TX73_024150 0.76 -1.3
5,237,960 + TX73_024150 0.85 -0.6
5,237,960 + TX73_024150 0.85 +0.0
5,237,968 - TX73_024150 0.86 +0.9
5,237,968 - TX73_024150 0.86 +0.5
5,237,995 + TX73_024150 0.89 -1.0
5,238,041 - +0.8
5,238,076 - -0.0
5,238,087 - -0.3
5,238,115 - -0.6
5,238,311 + TX73_024155 0.30 +0.1
5,238,314 - TX73_024155 0.30 +0.8
5,238,319 - TX73_024155 0.31 -0.4
5,238,319 - TX73_024155 0.31 +0.1
5,238,319 - TX73_024155 0.31 -0.6
5,238,350 - TX73_024155 0.35 +0.0
5,238,387 - TX73_024155 0.40 +0.3
5,238,445 + TX73_024155 0.47 -1.0
5,238,445 + TX73_024155 0.47 +1.1
5,238,453 - TX73_024155 0.48 -0.2
5,238,453 - TX73_024155 0.48 -2.5
5,238,467 + TX73_024155 0.50 +0.2
5,238,538 + TX73_024155 0.59 -0.1
5,238,586 - TX73_024155 0.65 +0.3
5,238,588 + TX73_024155 0.66 +0.4
5,238,598 + TX73_024155 0.67 +0.1
5,238,684 + TX73_024155 0.78 -0.5
5,238,749 - TX73_024155 0.87 +0.5
5,238,787 - -1.3
5,238,844 + -0.2
5,238,886 + +0.5
5,238,909 - +0.8
5,238,926 + -2.5
5,238,926 + -0.4
5,238,934 - -0.3
5,238,948 - +0.1
5,239,012 + -0.5
5,239,012 + -1.0
5,239,012 + +1.0
5,239,020 - +0.5
5,239,031 - -0.8
5,239,043 - -1.4
5,239,056 + +1.4
5,239,082 - +0.2
5,239,138 + TX73_024160 0.11 -1.1
5,239,215 + TX73_024160 0.14 -0.5
5,239,361 + TX73_024160 0.21 -0.0
5,239,411 - TX73_024160 0.23 -0.0
5,239,439 + TX73_024160 0.24 -0.0
5,239,446 + TX73_024160 0.24 -2.0
5,239,456 + TX73_024160 0.25 -2.0
5,239,480 + TX73_024160 0.26 +0.1
5,239,488 - TX73_024160 0.26 -0.9
5,239,542 + TX73_024160 0.29 -0.7
5,239,665 - TX73_024160 0.34 +0.1
5,239,667 + TX73_024160 0.34 +0.4
5,239,700 + TX73_024160 0.35 +0.1
5,239,731 + TX73_024160 0.37 -0.3
5,239,818 + TX73_024160 0.40 +0.1
5,239,827 - TX73_024160 0.41 -1.0
5,239,909 - TX73_024160 0.44 +0.5
5,239,909 - TX73_024160 0.44 -0.7
5,239,955 + TX73_024160 0.46 -0.6
5,240,089 + TX73_024160 0.52 -1.9
5,240,097 - TX73_024160 0.53 +0.3
5,240,109 + TX73_024160 0.53 +0.4
5,240,118 - TX73_024160 0.53 -1.3
5,240,144 - TX73_024160 0.55 -0.6
5,240,464 + TX73_024160 0.68 +0.2
5,240,510 + TX73_024160 0.70 -0.6
5,240,555 - TX73_024160 0.72 -0.1
5,240,595 + TX73_024160 0.74 +0.9
5,240,620 - TX73_024160 0.75 +0.5
5,240,622 + TX73_024160 0.75 -0.6
5,240,639 + TX73_024160 0.76 +0.9
5,240,678 + TX73_024160 0.78 +0.8
5,240,678 + TX73_024160 0.78 -0.4
5,240,703 + TX73_024160 0.79 -0.7
5,240,733 - TX73_024160 0.80 -0.1
5,240,765 + TX73_024160 0.81 -0.0
5,240,790 - TX73_024160 0.83 -0.6
5,240,847 + TX73_024160 0.85 -1.5
5,240,860 - TX73_024160 0.86 +2.4
5,240,900 - TX73_024160 0.87 +0.9
5,240,915 - TX73_024160 0.88 -2.5
5,240,963 + -0.7
5,240,979 - +1.8
5,240,980 + +1.7
5,240,980 - -0.7
5,240,996 + -1.2
5,241,004 - +0.2
5,241,020 + +0.6
5,241,068 - +0.2
5,241,079 + +0.9
5,241,087 - -0.1
5,241,087 - -0.4
5,241,089 + +0.1
5,241,092 - -0.5
5,241,094 + +1.2
5,241,094 + +0.6
5,241,097 - -1.2
5,241,099 + -1.1
5,241,101 + -0.7
5,241,102 - +0.1
5,241,102 - +0.8
5,241,106 - +0.2
5,241,126 - -0.2
5,241,146 - +0.4
5,241,290 + TX73_024165 0.14 +1.0
5,241,290 + TX73_024165 0.14 -1.1
5,241,293 + TX73_024165 0.15 -0.7
5,241,298 - TX73_024165 0.16 -0.2
5,241,391 - TX73_024165 0.32 +0.8
5,241,401 - TX73_024165 0.34 -2.0
5,241,414 - TX73_024165 0.36 +0.2
5,241,434 + TX73_024165 0.39 +0.3
5,241,447 + TX73_024165 0.42 +0.1
5,241,447 + TX73_024165 0.42 -1.0
5,241,457 - TX73_024165 0.44 -0.8
5,241,473 + TX73_024165 0.46 +0.2
5,241,569 - TX73_024165 0.63 -0.9
5,241,569 - TX73_024165 0.63 -1.6
5,241,569 - TX73_024165 0.63 +0.9
5,241,673 + TX73_024165 0.81 -0.9
5,241,676 - TX73_024165 0.82 +1.0
5,241,695 + TX73_024165 0.85 +0.7
5,241,765 - +0.8
5,241,849 - -0.5
5,241,884 - +0.2
5,241,960 + TX73_024170 0.15 -0.2
5,242,020 - TX73_024170 0.23 -1.0
5,242,044 - TX73_024170 0.27 +0.9
5,242,060 + TX73_024170 0.29 +0.3
5,242,060 + TX73_024170 0.29 -0.3
5,242,060 + TX73_024170 0.29 -0.2
5,242,095 - TX73_024170 0.34 -1.4
5,242,187 + TX73_024170 0.48 -0.0

Or see this region's nucleotide sequence