Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_005390

Experiment: MDC_bicarb with butyrate and Adenine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MDC_bicarb with butyrate and Adenine
1,152,752	-		TX73_005385	0.14	+0.2
1,152,755	+		TX73_005385	0.14	+0.2
1,152,763	-		TX73_005385	0.15	+1.9
1,152,847	-		TX73_005385	0.23	-0.9
1,152,934	-		TX73_005385	0.31	-1.4
1,152,934	-		TX73_005385	0.31	-0.1
1,152,937	+		TX73_005385	0.31	-0.7
1,152,974	+		TX73_005385	0.34	-0.5
1,152,976	+		TX73_005385	0.34	+0.5
1,152,997	-		TX73_005385	0.36	-0.4
1,153,004	+		TX73_005385	0.37	+0.3
1,153,004	+		TX73_005385	0.37	+0.2
1,153,004	+		TX73_005385	0.37	+0.8
1,153,012	-		TX73_005385	0.38	+0.2
1,153,012	-		TX73_005385	0.38	+0.4
1,153,012	-		TX73_005385	0.38	+1.0
1,153,012	-		TX73_005385	0.38	+0.0
1,153,012	-		TX73_005385	0.38	+0.9
1,153,012	-		TX73_005385	0.38	+0.7
1,153,014	+		TX73_005385	0.38	+0.7
1,153,019	+		TX73_005385	0.38	+0.8
1,153,022	-		TX73_005385	0.38	+0.9
1,153,055	+		TX73_005385	0.41	-1.2
1,153,055	+		TX73_005385	0.41	+0.6
1,153,055	+		TX73_005385	0.41	+0.5
1,153,063	-		TX73_005385	0.42	+0.0
1,153,063	-		TX73_005385	0.42	-0.2
1,153,067	+		TX73_005385	0.43	-0.7
1,153,067	+		TX73_005385	0.43	-1.2
1,153,112	+		TX73_005385	0.47	-0.4
1,153,116	-		TX73_005385	0.47	-0.7
1,153,119	+		TX73_005385	0.47	+0.3
1,153,134	+		TX73_005385	0.49	+1.2
1,153,146	+		TX73_005385	0.50	+0.5
1,153,161	-		TX73_005385	0.51	+0.5
1,153,161	-		TX73_005385	0.51	+0.7
1,153,171	-		TX73_005385	0.52	-0.7
1,153,290	+		TX73_005385	0.63	+0.5
1,153,295	+		TX73_005385	0.63	-0.6
1,153,360	-		TX73_005385	0.69	+0.5
1,153,389	+		TX73_005385	0.72	-0.8
1,153,406	-		TX73_005385	0.73	-1.0
1,153,418	+		TX73_005385	0.74	+0.4
1,153,518	+		TX73_005385	0.83	+0.0
1,153,526	-		TX73_005385	0.84	-1.7
1,153,529	+		TX73_005385	0.84	+1.1
1,153,538	-		TX73_005385	0.85	-1.1
1,153,561	+		TX73_005385	0.87	+0.4
1,153,569	-		TX73_005385	0.88	-0.1
1,153,571	+		TX73_005385	0.88	+0.5
1,153,579	-		TX73_005385	0.89	-0.2
1,153,597	-				-2.3
1,153,607	-				+0.2
1,153,647	+				+1.7
1,153,654	+				-0.4
1,153,662	-				-1.0
1,153,698	-				+0.4
1,153,771	+				-0.0
1,153,779	-				+0.8
1,153,793	-				-1.5
1,153,795	+				-1.3
1,153,795	+				-0.5
1,153,815	+				-0.4
1,153,827	-				+0.1
1,153,841	+				+0.1
1,153,866	-		TX73_005390	0.12	+0.1
1,153,876	-		TX73_005390	0.13	-0.7
1,153,911	+		TX73_005390	0.15	+0.3
1,153,919	-		TX73_005390	0.16	+0.3
1,153,921	-		TX73_005390	0.16	+0.7
1,153,932	+		TX73_005390	0.17	-0.6
1,153,967	+		TX73_005390	0.20	-0.1
1,153,994	+		TX73_005390	0.22	+1.9
1,153,994	+		TX73_005390	0.22	+0.0
1,153,994	+		TX73_005390	0.22	-0.1
1,154,002	-		TX73_005390	0.22	+0.1
1,154,002	-		TX73_005390	0.22	+1.4
1,154,002	-		TX73_005390	0.22	+0.8
1,154,002	-		TX73_005390	0.22	-0.0
1,154,005	+		TX73_005390	0.23	-2.1
1,154,029	+		TX73_005390	0.24	-0.4
1,154,029	+		TX73_005390	0.24	+0.9
1,154,029	+		TX73_005390	0.24	+0.8
1,154,079	+		TX73_005390	0.28	+0.9
1,154,124	+		TX73_005390	0.32	+1.5
1,154,125	+		TX73_005390	0.32	-0.6
1,154,125	+		TX73_005390	0.32	-0.4
1,154,152	-		TX73_005390	0.34	-0.1
1,154,201	+		TX73_005390	0.38	+0.5
1,154,209	-		TX73_005390	0.38	+1.1
1,154,220	+		TX73_005390	0.39	-2.5
1,154,235	+		TX73_005390	0.40	-0.3
1,154,243	-		TX73_005390	0.41	-1.0
1,154,260	+		TX73_005390	0.42	-0.4
1,154,270	-		TX73_005390	0.43	-0.7
1,154,284	+		TX73_005390	0.44	+0.8
1,154,322	+		TX73_005390	0.47	+0.9
1,154,336	+		TX73_005390	0.48	-1.0
1,154,339	+		TX73_005390	0.49	-0.6
1,154,368	-		TX73_005390	0.51	+1.2
1,154,370	+		TX73_005390	0.51	-0.9
1,154,370	+		TX73_005390	0.51	-0.1
1,154,378	-		TX73_005390	0.52	-0.3
1,154,378	-		TX73_005390	0.52	-0.6
1,154,400	+		TX73_005390	0.53	-0.3
1,154,410	+		TX73_005390	0.54	+0.4
1,154,414	+		TX73_005390	0.54	-0.1
1,154,422	-		TX73_005390	0.55	+0.6
1,154,422	-		TX73_005390	0.55	+0.0
1,154,422	-		TX73_005390	0.55	-2.2
1,154,426	+		TX73_005390	0.55	+0.5
1,154,445	-		TX73_005390	0.57	-0.8
1,154,447	+		TX73_005390	0.57	-0.5
1,154,455	-		TX73_005390	0.58	+0.5
1,154,463	+		TX73_005390	0.58	-2.1
1,154,468	+		TX73_005390	0.59	+0.9
1,154,471	-		TX73_005390	0.59	+0.4
1,154,473	-		TX73_005390	0.59	+1.2
1,154,476	-		TX73_005390	0.59	+0.1
1,154,512	+		TX73_005390	0.62	-0.4
1,154,514	+		TX73_005390	0.62	-0.4
1,154,520	-		TX73_005390	0.63	-0.4
1,154,567	+		TX73_005390	0.66	+0.9
1,154,570	+		TX73_005390	0.67	+0.0
1,154,575	-		TX73_005390	0.67	-0.1
1,154,602	+		TX73_005390	0.69	+0.5
1,154,635	-		TX73_005390	0.72	+0.2
1,154,645	-		TX73_005390	0.72	+0.7
1,154,645	-		TX73_005390	0.72	+0.5
1,154,645	-		TX73_005390	0.72	+0.4
1,154,645	-		TX73_005390	0.72	-0.7
1,154,650	-		TX73_005390	0.73	-0.9
1,154,650	-		TX73_005390	0.73	-1.8
1,154,674	+		TX73_005390	0.75	-0.3
1,154,698	-		TX73_005390	0.76	+1.4
1,154,698	-		TX73_005390	0.76	+0.6
1,154,698	-		TX73_005390	0.76	+0.7
1,154,712	+		TX73_005390	0.78	-2.0
1,154,759	+		TX73_005390	0.81	+0.6
1,154,759	+		TX73_005390	0.81	-0.4
1,154,759	+		TX73_005390	0.81	+0.4
1,154,759	+		TX73_005390	0.81	+0.6
1,154,759	+		TX73_005390	0.81	+1.4
1,154,759	+		TX73_005390	0.81	+0.4
1,154,761	+		TX73_005390	0.81	+0.7
1,154,761	+		TX73_005390	0.81	+0.1
1,154,767	-		TX73_005390	0.82	+0.4
1,154,767	-		TX73_005390	0.82	-1.0
1,154,767	-		TX73_005390	0.82	-0.6
1,154,767	-		TX73_005390	0.82	+0.8
1,154,767	-		TX73_005390	0.82	+0.5
1,154,767	-		TX73_005390	0.82	+0.3
1,154,767	-		TX73_005390	0.82	+0.1
1,154,820	-		TX73_005390	0.86	-0.1
1,154,826	+		TX73_005390	0.86	+0.0
1,154,839	-		TX73_005390	0.87	+0.5
1,154,849	+		TX73_005390	0.88	-0.0
1,154,890	-				+0.2
1,154,897	+				-0.7
1,154,950	-				-0.1
1,154,968	+				+0.4
1,154,973	+				+0.3
1,154,982	+				+0.1
1,154,990	-				+0.1
1,154,990	-				-0.3
1,155,002	+				+0.6
1,155,008	+				-0.1
1,155,021	-				+0.9
1,155,031	-				+0.6
1,155,044	-				+0.9
1,155,044	-				+0.8
1,155,069	-				+1.0
1,155,090	+				-0.4
1,155,112	+				+1.1
1,155,131	-				-0.3
1,155,136	-				+0.7
1,155,175	+				+0.7
1,155,198	+				+0.5
1,155,199	+				+2.1
1,155,199	+				+0.0
1,155,265	+				+0.4
1,155,267	+				+0.1
1,155,275	-				-1.0
1,155,282	+				+1.1
1,155,282	+				+0.5
1,155,290	-				-0.2
1,155,302	+				+0.4
1,155,302	+				+0.7
1,155,310	-				+0.2
1,155,310	-				-1.8
1,155,314	+				-1.2
1,155,315	-				+0.0
1,155,317	+				+0.3
1,155,333	-				-1.4
1,155,351	+				-1.0
1,155,375	-				+0.9
1,155,407	-				+0.1
1,155,407	-				-1.1
1,155,420	+				-0.1
1,155,465	+				-0.0
1,155,489	+				+0.3
1,155,515	+		TX73_005395	0.26	-0.0
1,155,562	-		TX73_005395	0.56	+0.9
1,155,583	+		TX73_005395	0.70	-0.3
1,155,591	-		TX73_005395	0.75	-0.5
1,155,593	+		TX73_005395	0.76	+0.6
1,155,638	+				-0.3
1,155,642	+				+0.4
1,155,662	+				-1.2
1,155,673	+				-2.8
1,155,680	-				+0.5
1,155,709	+				+0.8
1,155,709	+				+0.4
1,155,711	+				-1.4
1,155,749	-				-1.5