Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_003355

Experiment: MDC_bicarb with butyrate and Adenine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntTX73_003345 and TX73_003350 are separated by 5 nucleotidesTX73_003350 and TX73_003355 are separated by 24 nucleotidesTX73_003355 and TX73_003360 are separated by 21 nucleotides TX73_003345: TX73_003345 - flagellar hook protein FlgE, at 713,112 to 714,377 _003345 TX73_003350: TX73_003350 - hypothetical protein, at 714,383 to 714,640 _003350 TX73_003355: TX73_003355 - flagellar protein FlgN, at 714,665 to 715,117 _003355 TX73_003360: TX73_003360 - flagellar hook-associated protein FlgK, at 715,139 to 716,902 _003360 Position (kb) 714 715 716Strain fitness (log2 ratio) -2 -1 0 1at 713.675 kb on - strand, within TX73_003345at 713.711 kb on + strand, within TX73_003345at 713.719 kb on - strand, within TX73_003345at 713.719 kb on - strand, within TX73_003345at 714.029 kb on + strand, within TX73_003345at 714.195 kb on + strand, within TX73_003345at 714.203 kb on - strand, within TX73_003345at 714.228 kb on + strand, within TX73_003345at 714.442 kb on + strand, within TX73_003350at 714.449 kb on - strand, within TX73_003350at 714.608 kb on + strand, within TX73_003350at 714.612 kb on + strand, within TX73_003350at 714.612 kb on + strand, within TX73_003350at 714.620 kb on - strandat 714.690 kb on - strandat 714.778 kb on + strand, within TX73_003355at 714.786 kb on - strand, within TX73_003355at 714.905 kb on - strand, within TX73_003355at 714.905 kb on - strand, within TX73_003355at 714.940 kb on - strand, within TX73_003355at 715.054 kb on + strand, within TX73_003355at 715.062 kb on - strand, within TX73_003355at 715.116 kb on + strandat 715.124 kb on - strandat 715.144 kb on + strandat 715.144 kb on + strandat 715.192 kb on + strandat 715.200 kb on - strandat 715.373 kb on - strand, within TX73_003360at 715.429 kb on - strand, within TX73_003360at 715.429 kb on - strand, within TX73_003360at 715.429 kb on - strand, within TX73_003360at 715.431 kb on + strand, within TX73_003360at 715.431 kb on - strand, within TX73_003360at 715.439 kb on + strand, within TX73_003360at 715.471 kb on + strand, within TX73_003360at 715.528 kb on - strand, within TX73_003360at 715.543 kb on + strand, within TX73_003360at 715.546 kb on - strand, within TX73_003360at 715.665 kb on + strand, within TX73_003360at 715.825 kb on + strand, within TX73_003360at 715.833 kb on - strand, within TX73_003360at 715.860 kb on - strand, within TX73_003360at 715.868 kb on - strand, within TX73_003360at 715.884 kb on - strand, within TX73_003360at 715.897 kb on + strand, within TX73_003360at 716.031 kb on - strand, within TX73_003360at 716.074 kb on + strand, within TX73_003360at 716.074 kb on + strand, within TX73_003360at 716.087 kb on - strand, within TX73_003360

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MDC_bicarb with butyrate and Adenine
remove
713,675 - TX73_003345 0.44 +0.3
713,711 + TX73_003345 0.47 -0.1
713,719 - TX73_003345 0.48 -0.3
713,719 - TX73_003345 0.48 -0.7
714,029 + TX73_003345 0.72 -0.0
714,195 + TX73_003345 0.86 -0.8
714,203 - TX73_003345 0.86 -0.7
714,228 + TX73_003345 0.88 -0.3
714,442 + TX73_003350 0.23 -2.7
714,449 - TX73_003350 0.26 -2.0
714,608 + TX73_003350 0.87 +0.2
714,612 + TX73_003350 0.89 +0.7
714,612 + TX73_003350 0.89 -0.7
714,620 - -0.5
714,690 - +1.3
714,778 + TX73_003355 0.25 +1.1
714,786 - TX73_003355 0.27 +0.3
714,905 - TX73_003355 0.53 +0.5
714,905 - TX73_003355 0.53 -0.8
714,940 - TX73_003355 0.61 +1.0
715,054 + TX73_003355 0.86 +0.4
715,062 - TX73_003355 0.88 -0.8
715,116 + +0.1
715,124 - -1.4
715,144 + -0.3
715,144 + +0.2
715,192 + +0.0
715,200 - +1.3
715,373 - TX73_003360 0.13 +1.1
715,429 - TX73_003360 0.16 -0.2
715,429 - TX73_003360 0.16 +0.2
715,429 - TX73_003360 0.16 +0.7
715,431 + TX73_003360 0.17 +0.1
715,431 - TX73_003360 0.17 -0.2
715,439 + TX73_003360 0.17 +0.1
715,471 + TX73_003360 0.19 +1.0
715,528 - TX73_003360 0.22 +0.3
715,543 + TX73_003360 0.23 -0.4
715,546 - TX73_003360 0.23 +0.8
715,665 + TX73_003360 0.30 +0.2
715,825 + TX73_003360 0.39 +0.2
715,833 - TX73_003360 0.39 -0.0
715,860 - TX73_003360 0.41 +0.0
715,868 - TX73_003360 0.41 +0.4
715,884 - TX73_003360 0.42 -0.2
715,897 + TX73_003360 0.43 -0.7
716,031 - TX73_003360 0.51 +0.8
716,074 + TX73_003360 0.53 -0.0
716,074 + TX73_003360 0.53 +1.7
716,087 - TX73_003360 0.54 +0.7

Or see this region's nucleotide sequence