Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_001880

Experiment: MDC_bicarb with butyrate and Adenine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_001875 and TX73_001880 are separated by 14 nucleotidesTX73_001880 and TX73_001885 are separated by 78 nucleotidesTX73_001885 and TX73_001890 are separated by 93 nucleotides TX73_001875: TX73_001875 - class A beta-lactamase, at 392,648 to 393,523 _001875 TX73_001880: TX73_001880 - endonuclease/exonuclease/phosphatase family protein, at 393,538 to 394,665 _001880 TX73_001885: TX73_001885 - sulfite exporter TauE/SafE family protein, at 394,744 to 395,547 _001885 TX73_001890: TX73_001890 - MBL fold metallo-hydrolase, at 395,641 to 396,537 _001890 Position (kb) 393 394 395Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 392.585 kb on + strandat 392.610 kb on + strandat 392.610 kb on + strandat 392.694 kb on + strandat 392.694 kb on + strandat 392.694 kb on + strandat 392.701 kb on - strandat 392.702 kb on - strandat 392.702 kb on - strandat 392.792 kb on + strand, within TX73_001875at 392.797 kb on + strand, within TX73_001875at 392.862 kb on + strand, within TX73_001875at 392.882 kb on + strand, within TX73_001875at 392.893 kb on + strand, within TX73_001875at 392.899 kb on + strand, within TX73_001875at 392.946 kb on + strand, within TX73_001875at 392.953 kb on - strand, within TX73_001875at 392.988 kb on - strand, within TX73_001875at 392.996 kb on + strand, within TX73_001875at 393.024 kb on - strand, within TX73_001875at 393.080 kb on + strand, within TX73_001875at 393.106 kb on - strand, within TX73_001875at 393.142 kb on + strand, within TX73_001875at 393.189 kb on + strand, within TX73_001875at 393.233 kb on - strand, within TX73_001875at 393.303 kb on + strand, within TX73_001875at 393.311 kb on - strand, within TX73_001875at 393.326 kb on - strand, within TX73_001875at 393.387 kb on + strand, within TX73_001875at 393.397 kb on - strand, within TX73_001875at 393.402 kb on - strand, within TX73_001875at 393.444 kb on + strandat 393.495 kb on - strandat 393.517 kb on + strandat 393.594 kb on - strandat 393.673 kb on - strand, within TX73_001880at 393.676 kb on + strand, within TX73_001880at 393.685 kb on + strand, within TX73_001880at 393.737 kb on - strand, within TX73_001880at 393.755 kb on + strand, within TX73_001880at 393.757 kb on + strand, within TX73_001880at 393.763 kb on - strand, within TX73_001880at 393.850 kb on + strand, within TX73_001880at 393.875 kb on - strand, within TX73_001880at 393.875 kb on - strand, within TX73_001880at 393.931 kb on - strand, within TX73_001880at 393.966 kb on + strand, within TX73_001880at 394.069 kb on - strand, within TX73_001880at 394.075 kb on - strand, within TX73_001880at 394.109 kb on - strand, within TX73_001880at 394.118 kb on - strand, within TX73_001880at 394.140 kb on - strand, within TX73_001880at 394.161 kb on - strand, within TX73_001880at 394.163 kb on + strand, within TX73_001880at 394.163 kb on + strand, within TX73_001880at 394.178 kb on - strand, within TX73_001880at 394.268 kb on - strand, within TX73_001880at 394.376 kb on - strand, within TX73_001880at 394.401 kb on + strand, within TX73_001880at 394.411 kb on + strand, within TX73_001880at 394.428 kb on - strand, within TX73_001880at 394.472 kb on + strand, within TX73_001880at 394.485 kb on - strand, within TX73_001880at 394.650 kb on + strandat 394.817 kb on - strandat 394.827 kb on - strand, within TX73_001885at 394.875 kb on - strand, within TX73_001885at 394.911 kb on + strand, within TX73_001885at 394.933 kb on - strand, within TX73_001885at 394.996 kb on - strand, within TX73_001885at 394.997 kb on + strand, within TX73_001885at 395.002 kb on + strand, within TX73_001885at 395.002 kb on + strand, within TX73_001885at 395.010 kb on - strand, within TX73_001885at 395.028 kb on - strand, within TX73_001885at 395.107 kb on - strand, within TX73_001885at 395.129 kb on + strand, within TX73_001885at 395.132 kb on - strand, within TX73_001885at 395.142 kb on - strand, within TX73_001885at 395.204 kb on + strand, within TX73_001885at 395.214 kb on - strand, within TX73_001885at 395.299 kb on + strand, within TX73_001885at 395.299 kb on + strand, within TX73_001885at 395.299 kb on + strand, within TX73_001885at 395.307 kb on - strand, within TX73_001885at 395.307 kb on - strand, within TX73_001885at 395.307 kb on - strand, within TX73_001885at 395.307 kb on - strand, within TX73_001885at 395.309 kb on + strand, within TX73_001885at 395.314 kb on + strand, within TX73_001885at 395.320 kb on + strand, within TX73_001885at 395.343 kb on - strand, within TX73_001885at 395.347 kb on - strand, within TX73_001885at 395.349 kb on - strand, within TX73_001885at 395.350 kb on - strand, within TX73_001885at 395.351 kb on + strand, within TX73_001885at 395.353 kb on - strand, within TX73_001885at 395.420 kb on - strand, within TX73_001885at 395.429 kb on - strand, within TX73_001885at 395.429 kb on - strand, within TX73_001885at 395.431 kb on + strand, within TX73_001885at 395.434 kb on - strand, within TX73_001885at 395.437 kb on - strand, within TX73_001885at 395.446 kb on + strand, within TX73_001885at 395.465 kb on + strand, within TX73_001885at 395.465 kb on + strand, within TX73_001885at 395.473 kb on - strandat 395.483 kb on - strandat 395.491 kb on + strandat 395.494 kb on - strandat 395.499 kb on - strandat 395.509 kb on - strandat 395.513 kb on + strandat 395.624 kb on + strandat 395.632 kb on - strandat 395.632 kb on - strandat 395.637 kb on - strandat 395.637 kb on - strandat 395.638 kb on + strandat 395.638 kb on + strandat 395.646 kb on - strandat 395.652 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MDC_bicarb with butyrate and Adenine
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392,585 + -2.1
392,610 + +0.2
392,610 + +0.8
392,694 + +0.6
392,694 + +1.0
392,694 + -2.0
392,701 - -0.2
392,702 - -2.1
392,702 - -0.1
392,792 + TX73_001875 0.16 -3.2
392,797 + TX73_001875 0.17 +0.2
392,862 + TX73_001875 0.24 -0.6
392,882 + TX73_001875 0.27 +0.8
392,893 + TX73_001875 0.28 -0.4
392,899 + TX73_001875 0.29 +0.9
392,946 + TX73_001875 0.34 +0.2
392,953 - TX73_001875 0.35 +0.0
392,988 - TX73_001875 0.39 +1.6
392,996 + TX73_001875 0.40 +0.8
393,024 - TX73_001875 0.43 +1.3
393,080 + TX73_001875 0.49 +0.3
393,106 - TX73_001875 0.52 -0.2
393,142 + TX73_001875 0.56 +0.4
393,189 + TX73_001875 0.62 +0.6
393,233 - TX73_001875 0.67 -0.8
393,303 + TX73_001875 0.75 -0.8
393,311 - TX73_001875 0.76 -1.1
393,326 - TX73_001875 0.77 -0.1
393,387 + TX73_001875 0.84 +0.6
393,397 - TX73_001875 0.86 +0.7
393,402 - TX73_001875 0.86 +0.1
393,444 + +0.5
393,495 - +0.6
393,517 + -1.1
393,594 - -0.6
393,673 - TX73_001880 0.12 +0.1
393,676 + TX73_001880 0.12 +1.4
393,685 + TX73_001880 0.13 +0.8
393,737 - TX73_001880 0.18 +0.1
393,755 + TX73_001880 0.19 -0.3
393,757 + TX73_001880 0.19 +1.1
393,763 - TX73_001880 0.20 -1.6
393,850 + TX73_001880 0.28 +0.7
393,875 - TX73_001880 0.30 +1.4
393,875 - TX73_001880 0.30 +0.0
393,931 - TX73_001880 0.35 +0.3
393,966 + TX73_001880 0.38 -0.1
394,069 - TX73_001880 0.47 -0.2
394,075 - TX73_001880 0.48 -1.0
394,109 - TX73_001880 0.51 -0.7
394,118 - TX73_001880 0.51 +0.8
394,140 - TX73_001880 0.53 +0.5
394,161 - TX73_001880 0.55 +0.8
394,163 + TX73_001880 0.55 +2.0
394,163 + TX73_001880 0.55 +0.8
394,178 - TX73_001880 0.57 +1.1
394,268 - TX73_001880 0.65 +0.3
394,376 - TX73_001880 0.74 +0.0
394,401 + TX73_001880 0.77 -0.0
394,411 + TX73_001880 0.77 +0.3
394,428 - TX73_001880 0.79 -1.6
394,472 + TX73_001880 0.83 +0.2
394,485 - TX73_001880 0.84 -0.4
394,650 + +0.1
394,817 - +0.2
394,827 - TX73_001885 0.10 -1.6
394,875 - TX73_001885 0.16 -0.1
394,911 + TX73_001885 0.21 +0.6
394,933 - TX73_001885 0.24 -3.2
394,996 - TX73_001885 0.31 +0.2
394,997 + TX73_001885 0.31 -0.4
395,002 + TX73_001885 0.32 +0.7
395,002 + TX73_001885 0.32 +0.1
395,010 - TX73_001885 0.33 +0.5
395,028 - TX73_001885 0.35 -0.0
395,107 - TX73_001885 0.45 -0.1
395,129 + TX73_001885 0.48 +0.1
395,132 - TX73_001885 0.48 -0.3
395,142 - TX73_001885 0.50 -1.0
395,204 + TX73_001885 0.57 +1.1
395,214 - TX73_001885 0.58 +0.2
395,299 + TX73_001885 0.69 -0.2
395,299 + TX73_001885 0.69 -2.5
395,299 + TX73_001885 0.69 -0.3
395,307 - TX73_001885 0.70 -0.0
395,307 - TX73_001885 0.70 +0.9
395,307 - TX73_001885 0.70 -1.1
395,307 - TX73_001885 0.70 -1.6
395,309 + TX73_001885 0.70 -0.8
395,314 + TX73_001885 0.71 -0.2
395,320 + TX73_001885 0.72 -1.1
395,343 - TX73_001885 0.75 -1.1
395,347 - TX73_001885 0.75 -0.7
395,349 - TX73_001885 0.75 +0.2
395,350 - TX73_001885 0.75 -1.2
395,351 + TX73_001885 0.75 +0.7
395,353 - TX73_001885 0.76 +0.5
395,420 - TX73_001885 0.84 -0.6
395,429 - TX73_001885 0.85 +0.3
395,429 - TX73_001885 0.85 +1.0
395,431 + TX73_001885 0.85 +0.5
395,434 - TX73_001885 0.86 -0.4
395,437 - TX73_001885 0.86 +0.2
395,446 + TX73_001885 0.87 -0.9
395,465 + TX73_001885 0.90 -0.5
395,465 + TX73_001885 0.90 +0.1
395,473 - +1.9
395,483 - +0.8
395,491 + -0.6
395,494 - +0.2
395,499 - -0.9
395,509 - -1.7
395,513 + +1.2
395,624 + +0.2
395,632 - -1.4
395,632 - -1.1
395,637 - -0.3
395,637 - -0.6
395,638 + +0.6
395,638 + +0.7
395,646 - -0.2
395,652 + -1.0

Or see this region's nucleotide sequence