Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_001835

Experiment: MDC_bicarb with butyrate and Adenine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntTX73_001830 and TX73_001835 are separated by 20 nucleotidesTX73_001835 and TX73_001840 overlap by 4 nucleotidesTX73_001840 and TX73_001845 are separated by 187 nucleotides TX73_001830: TX73_001830 - glycosyltransferase family 39 protein, at 383,096 to 384,634 _001830 TX73_001835: TX73_001835 - HPr family phosphocarrier protein, at 384,655 to 384,987 _001835 TX73_001840: TX73_001840 - PTS sugar transporter subunit IIA, at 384,984 to 385,385 _001840 TX73_001845: TX73_001845 - HPr kinase/phosphatase C-terminal domain-containing protein, at 385,573 to 386,040 _001845 Position (kb) 384 385Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 383.688 kb on - strand, within TX73_001830at 383.710 kb on - strand, within TX73_001830at 383.728 kb on + strand, within TX73_001830at 383.728 kb on + strand, within TX73_001830at 383.728 kb on + strand, within TX73_001830at 383.736 kb on - strand, within TX73_001830at 383.739 kb on + strand, within TX73_001830at 383.747 kb on - strand, within TX73_001830at 383.772 kb on + strand, within TX73_001830at 383.772 kb on + strand, within TX73_001830at 383.772 kb on + strand, within TX73_001830at 383.777 kb on + strand, within TX73_001830at 383.791 kb on + strand, within TX73_001830at 383.793 kb on + strand, within TX73_001830at 383.799 kb on - strand, within TX73_001830at 383.799 kb on - strand, within TX73_001830at 383.801 kb on - strand, within TX73_001830at 383.801 kb on - strand, within TX73_001830at 383.801 kb on - strand, within TX73_001830at 383.824 kb on - strand, within TX73_001830at 383.848 kb on - strand, within TX73_001830at 383.877 kb on - strand, within TX73_001830at 383.921 kb on + strand, within TX73_001830at 383.921 kb on + strand, within TX73_001830at 383.929 kb on - strand, within TX73_001830at 383.939 kb on - strand, within TX73_001830at 383.947 kb on - strand, within TX73_001830at 383.968 kb on + strand, within TX73_001830at 383.971 kb on - strand, within TX73_001830at 383.981 kb on - strand, within TX73_001830at 383.990 kb on + strand, within TX73_001830at 383.991 kb on + strand, within TX73_001830at 384.008 kb on + strand, within TX73_001830at 384.028 kb on + strand, within TX73_001830at 384.028 kb on + strand, within TX73_001830at 384.055 kb on - strand, within TX73_001830at 384.082 kb on + strand, within TX73_001830at 384.082 kb on + strand, within TX73_001830at 384.082 kb on + strand, within TX73_001830at 384.090 kb on - strand, within TX73_001830at 384.092 kb on + strand, within TX73_001830at 384.105 kb on - strand, within TX73_001830at 384.107 kb on - strand, within TX73_001830at 384.110 kb on - strand, within TX73_001830at 384.117 kb on - strand, within TX73_001830at 384.117 kb on - strand, within TX73_001830at 384.147 kb on - strand, within TX73_001830at 384.156 kb on + strand, within TX73_001830at 384.161 kb on + strand, within TX73_001830at 384.191 kb on + strand, within TX73_001830at 384.199 kb on - strand, within TX73_001830at 384.203 kb on + strand, within TX73_001830at 384.214 kb on + strand, within TX73_001830at 384.225 kb on + strand, within TX73_001830at 384.236 kb on + strand, within TX73_001830at 384.238 kb on - strand, within TX73_001830at 384.247 kb on - strand, within TX73_001830at 384.252 kb on + strand, within TX73_001830at 384.252 kb on + strand, within TX73_001830at 384.252 kb on + strand, within TX73_001830at 384.253 kb on + strand, within TX73_001830at 384.260 kb on - strand, within TX73_001830at 384.261 kb on - strand, within TX73_001830at 384.266 kb on + strand, within TX73_001830at 384.283 kb on + strand, within TX73_001830at 384.296 kb on - strand, within TX73_001830at 384.332 kb on - strand, within TX73_001830at 384.348 kb on + strand, within TX73_001830at 384.359 kb on + strand, within TX73_001830at 384.367 kb on - strand, within TX73_001830at 384.380 kb on - strand, within TX73_001830at 384.388 kb on - strand, within TX73_001830at 384.413 kb on + strand, within TX73_001830at 384.421 kb on - strand, within TX73_001830at 384.423 kb on + strand, within TX73_001830at 384.455 kb on + strand, within TX73_001830at 384.455 kb on + strand, within TX73_001830at 384.455 kb on + strand, within TX73_001830at 384.458 kb on - strand, within TX73_001830at 384.460 kb on + strand, within TX73_001830at 384.463 kb on - strand, within TX73_001830at 384.463 kb on - strand, within TX73_001830at 384.463 kb on - strand, within TX73_001830at 384.463 kb on - strand, within TX73_001830at 384.463 kb on - strand, within TX73_001830at 384.468 kb on - strand, within TX73_001830at 384.481 kb on + strandat 384.483 kb on - strandat 384.484 kb on - strandat 384.489 kb on - strandat 384.505 kb on + strandat 384.505 kb on + strandat 384.505 kb on - strandat 384.513 kb on - strandat 384.513 kb on - strandat 384.520 kb on + strandat 384.520 kb on + strandat 384.521 kb on + strandat 384.522 kb on + strandat 384.528 kb on - strandat 384.529 kb on - strandat 384.534 kb on - strandat 384.537 kb on + strandat 384.541 kb on + strandat 384.542 kb on + strandat 384.549 kb on - strandat 384.550 kb on - strandat 384.569 kb on - strandat 384.583 kb on + strandat 384.583 kb on + strandat 384.606 kb on - strandat 384.607 kb on + strandat 384.608 kb on - strandat 384.617 kb on - strandat 384.617 kb on - strandat 384.624 kb on + strandat 384.626 kb on + strandat 384.680 kb on - strandat 384.717 kb on + strand, within TX73_001835at 384.725 kb on - strand, within TX73_001835at 384.725 kb on - strand, within TX73_001835at 384.730 kb on - strand, within TX73_001835at 384.821 kb on + strand, within TX73_001835at 384.829 kb on - strand, within TX73_001835at 384.829 kb on - strand, within TX73_001835at 384.829 kb on - strand, within TX73_001835at 384.834 kb on - strand, within TX73_001835at 384.880 kb on - strand, within TX73_001835at 384.937 kb on + strand, within TX73_001835at 384.943 kb on + strand, within TX73_001835at 384.943 kb on + strand, within TX73_001835at 384.943 kb on + strand, within TX73_001835at 384.943 kb on + strand, within TX73_001835at 384.951 kb on - strand, within TX73_001835at 384.954 kb on + strandat 384.954 kb on + strandat 384.954 kb on + strandat 384.962 kb on - strandat 384.964 kb on + strandat 384.964 kb on + strandat 384.972 kb on - strandat 384.975 kb on + strandat 384.983 kb on + strandat 385.392 kb on + strandat 385.406 kb on + strandat 385.411 kb on - strandat 385.413 kb on + strandat 385.416 kb on - strandat 385.416 kb on - strandat 385.431 kb on + strandat 385.440 kb on + strandat 385.453 kb on + strandat 385.461 kb on - strandat 385.502 kb on - strandat 385.502 kb on - strandat 385.523 kb on - strandat 385.566 kb on + strandat 385.578 kb on + strandat 385.582 kb on + strandat 385.586 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MDC_bicarb with butyrate and Adenine
remove
383,688 - TX73_001830 0.38 -0.2
383,710 - TX73_001830 0.40 -0.0
383,728 + TX73_001830 0.41 -0.7
383,728 + TX73_001830 0.41 +0.9
383,728 + TX73_001830 0.41 +1.0
383,736 - TX73_001830 0.42 -0.6
383,739 + TX73_001830 0.42 +0.9
383,747 - TX73_001830 0.42 -0.9
383,772 + TX73_001830 0.44 +1.1
383,772 + TX73_001830 0.44 +0.2
383,772 + TX73_001830 0.44 -0.2
383,777 + TX73_001830 0.44 +0.3
383,791 + TX73_001830 0.45 -0.1
383,793 + TX73_001830 0.45 +0.9
383,799 - TX73_001830 0.46 -1.5
383,799 - TX73_001830 0.46 +2.0
383,801 - TX73_001830 0.46 -1.6
383,801 - TX73_001830 0.46 +1.6
383,801 - TX73_001830 0.46 +0.6
383,824 - TX73_001830 0.47 +0.0
383,848 - TX73_001830 0.49 -2.1
383,877 - TX73_001830 0.51 +0.5
383,921 + TX73_001830 0.54 +0.8
383,921 + TX73_001830 0.54 -0.1
383,929 - TX73_001830 0.54 +0.2
383,939 - TX73_001830 0.55 -3.2
383,947 - TX73_001830 0.55 +0.3
383,968 + TX73_001830 0.57 +1.0
383,971 - TX73_001830 0.57 -0.2
383,981 - TX73_001830 0.58 +0.1
383,990 + TX73_001830 0.58 -0.7
383,991 + TX73_001830 0.58 -0.0
384,008 + TX73_001830 0.59 -0.0
384,028 + TX73_001830 0.61 -0.1
384,028 + TX73_001830 0.61 +0.6
384,055 - TX73_001830 0.62 -1.6
384,082 + TX73_001830 0.64 -0.3
384,082 + TX73_001830 0.64 +1.3
384,082 + TX73_001830 0.64 -0.2
384,090 - TX73_001830 0.65 -0.9
384,092 + TX73_001830 0.65 -1.2
384,105 - TX73_001830 0.66 -0.8
384,107 - TX73_001830 0.66 -1.1
384,110 - TX73_001830 0.66 -2.0
384,117 - TX73_001830 0.66 +0.5
384,117 - TX73_001830 0.66 +0.3
384,147 - TX73_001830 0.68 +0.1
384,156 + TX73_001830 0.69 +0.9
384,161 + TX73_001830 0.69 +0.1
384,191 + TX73_001830 0.71 -0.0
384,199 - TX73_001830 0.72 +1.1
384,203 + TX73_001830 0.72 -1.2
384,214 + TX73_001830 0.73 -2.6
384,225 + TX73_001830 0.73 +0.5
384,236 + TX73_001830 0.74 -0.6
384,238 - TX73_001830 0.74 -0.4
384,247 - TX73_001830 0.75 -0.3
384,252 + TX73_001830 0.75 -0.1
384,252 + TX73_001830 0.75 +0.5
384,252 + TX73_001830 0.75 +0.3
384,253 + TX73_001830 0.75 +1.0
384,260 - TX73_001830 0.76 +0.7
384,261 - TX73_001830 0.76 -1.3
384,266 + TX73_001830 0.76 -1.9
384,283 + TX73_001830 0.77 +1.7
384,296 - TX73_001830 0.78 -0.5
384,332 - TX73_001830 0.80 +0.9
384,348 + TX73_001830 0.81 -0.7
384,359 + TX73_001830 0.82 +0.7
384,367 - TX73_001830 0.83 +0.7
384,380 - TX73_001830 0.83 +0.3
384,388 - TX73_001830 0.84 -1.0
384,413 + TX73_001830 0.86 +0.6
384,421 - TX73_001830 0.86 +0.1
384,423 + TX73_001830 0.86 +1.4
384,455 + TX73_001830 0.88 +0.5
384,455 + TX73_001830 0.88 -0.3
384,455 + TX73_001830 0.88 +0.1
384,458 - TX73_001830 0.88 +1.0
384,460 + TX73_001830 0.89 -0.2
384,463 - TX73_001830 0.89 +0.8
384,463 - TX73_001830 0.89 -1.0
384,463 - TX73_001830 0.89 -0.5
384,463 - TX73_001830 0.89 -0.3
384,463 - TX73_001830 0.89 -0.7
384,468 - TX73_001830 0.89 -0.4
384,481 + -0.6
384,483 - -0.5
384,484 - -0.5
384,489 - -0.2
384,505 + -2.1
384,505 + -0.1
384,505 - -0.2
384,513 - -0.8
384,513 - -1.3
384,520 + -0.2
384,520 + +0.6
384,521 + +1.1
384,522 + -0.5
384,528 - -0.0
384,529 - +1.2
384,534 - +0.6
384,537 + +0.3
384,541 + +0.6
384,542 + -0.7
384,549 - -0.8
384,550 - +0.9
384,569 - -0.4
384,583 + +0.3
384,583 + -0.0
384,606 - -0.1
384,607 + -0.1
384,608 - -3.1
384,617 - +0.4
384,617 - -0.2
384,624 + -0.6
384,626 + +0.6
384,680 - -1.1
384,717 + TX73_001835 0.19 +1.4
384,725 - TX73_001835 0.21 +2.9
384,725 - TX73_001835 0.21 -0.4
384,730 - TX73_001835 0.23 -0.1
384,821 + TX73_001835 0.50 +0.4
384,829 - TX73_001835 0.52 -0.5
384,829 - TX73_001835 0.52 +1.4
384,829 - TX73_001835 0.52 +2.4
384,834 - TX73_001835 0.54 +0.6
384,880 - TX73_001835 0.68 +1.9
384,937 + TX73_001835 0.85 -0.7
384,943 + TX73_001835 0.86 +0.3
384,943 + TX73_001835 0.86 +0.3
384,943 + TX73_001835 0.86 +0.2
384,943 + TX73_001835 0.86 +0.9
384,951 - TX73_001835 0.89 -0.5
384,954 + -1.3
384,954 + -0.6
384,954 + -0.6
384,962 - +0.9
384,964 + +0.5
384,964 + -1.0
384,972 - +0.5
384,975 + -2.1
384,983 + +0.9
385,392 + -1.1
385,406 + +0.3
385,411 - +0.8
385,413 + -0.8
385,416 - -0.9
385,416 - +0.0
385,431 + -1.6
385,440 + +0.7
385,453 + +0.1
385,461 - +0.3
385,502 - -0.7
385,502 - +0.1
385,523 - +0.4
385,566 + -0.2
385,578 + +0.7
385,582 + -0.7
385,586 - -0.6

Or see this region's nucleotide sequence