Experiment: MDC_bicarb with butyrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_023920 and TX73_023925 are separated by 332 nucleotides TX73_023925 and TX73_023930 are separated by 28 nucleotides TX73_023930 and TX73_023935 overlap by 8 nucleotides
TX73_023920: TX73_023920 - electron transfer flavoprotein subunit beta/FixA family protein, at 5,190,822 to 5,191,667
_023920
TX73_023925: TX73_023925 - nitrogenase stabilizing/protective protein NifW, at 5,192,000 to 5,192,350
_023925
TX73_023930: TX73_023930 - homocitrate synthase, at 5,192,379 to 5,193,572
_023930
TX73_023935: TX73_023935 - cysteine desulfurase NifS, at 5,193,565 to 5,194,797
_023935
Position (kb) 5192
5193
5194 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5191.399 kb on + strand, within TX73_023920 at 5191.488 kb on + strand, within TX73_023920 at 5191.491 kb on - strand, within TX73_023920 at 5191.580 kb on - strand, within TX73_023920 at 5191.620 kb on + strand at 5191.620 kb on + strand at 5191.628 kb on - strand at 5191.628 kb on - strand at 5191.628 kb on - strand at 5191.640 kb on - strand at 5191.643 kb on + strand at 5191.669 kb on + strand at 5191.674 kb on + strand at 5191.833 kb on - strand at 5191.883 kb on + strand at 5191.912 kb on - strand at 5192.018 kb on - strand at 5192.021 kb on + strand at 5192.061 kb on + strand, within TX73_023925 at 5192.078 kb on - strand, within TX73_023925 at 5192.088 kb on - strand, within TX73_023925 at 5192.123 kb on - strand, within TX73_023925 at 5192.123 kb on - strand, within TX73_023925 at 5192.123 kb on - strand, within TX73_023925 at 5192.126 kb on + strand, within TX73_023925 at 5192.128 kb on - strand, within TX73_023925 at 5192.134 kb on - strand, within TX73_023925 at 5192.163 kb on + strand, within TX73_023925 at 5192.200 kb on + strand, within TX73_023925 at 5192.203 kb on - strand, within TX73_023925 at 5192.225 kb on - strand, within TX73_023925 at 5192.250 kb on - strand, within TX73_023925 at 5192.279 kb on + strand, within TX73_023925 at 5192.376 kb on - strand at 5192.388 kb on + strand at 5192.453 kb on - strand at 5192.493 kb on + strand at 5192.557 kb on + strand, within TX73_023930 at 5192.568 kb on - strand, within TX73_023930 at 5192.635 kb on + strand, within TX73_023930 at 5192.643 kb on - strand, within TX73_023930 at 5192.749 kb on - strand, within TX73_023930 at 5192.762 kb on - strand, within TX73_023930 at 5192.809 kb on + strand, within TX73_023930 at 5192.863 kb on - strand, within TX73_023930 at 5192.877 kb on + strand, within TX73_023930 at 5192.881 kb on + strand, within TX73_023930 at 5192.938 kb on - strand, within TX73_023930 at 5192.962 kb on + strand, within TX73_023930 at 5192.977 kb on + strand, within TX73_023930 at 5192.987 kb on + strand, within TX73_023930 at 5193.010 kb on + strand, within TX73_023930 at 5193.010 kb on + strand, within TX73_023930 at 5193.049 kb on + strand, within TX73_023930 at 5193.056 kb on + strand, within TX73_023930 at 5193.141 kb on + strand, within TX73_023930 at 5193.141 kb on + strand, within TX73_023930 at 5193.154 kb on - strand, within TX73_023930 at 5193.224 kb on - strand, within TX73_023930 at 5193.241 kb on + strand, within TX73_023930 at 5193.269 kb on - strand, within TX73_023930 at 5193.471 kb on - strand at 5193.473 kb on + strand at 5193.531 kb on + strand at 5193.534 kb on - strand at 5193.534 kb on - strand at 5193.568 kb on + strand at 5193.852 kb on - strand, within TX73_023935 at 5193.864 kb on - strand, within TX73_023935 at 5193.899 kb on + strand, within TX73_023935 at 5193.899 kb on + strand, within TX73_023935 at 5193.907 kb on - strand, within TX73_023935 at 5194.099 kb on - strand, within TX73_023935 at 5194.106 kb on + strand, within TX73_023935 at 5194.106 kb on + strand, within TX73_023935 at 5194.114 kb on - strand, within TX73_023935 at 5194.141 kb on + strand, within TX73_023935 at 5194.141 kb on + strand, within TX73_023935 at 5194.149 kb on - strand, within TX73_023935 at 5194.149 kb on - strand, within TX73_023935 at 5194.149 kb on - strand, within TX73_023935 at 5194.215 kb on + strand, within TX73_023935 at 5194.232 kb on + strand, within TX73_023935 at 5194.234 kb on - strand, within TX73_023935 at 5194.271 kb on + strand, within TX73_023935 at 5194.288 kb on - strand, within TX73_023935 at 5194.288 kb on - strand, within TX73_023935 at 5194.318 kb on - strand, within TX73_023935 at 5194.390 kb on - strand, within TX73_023935 at 5194.436 kb on - strand, within TX73_023935 at 5194.532 kb on - strand, within TX73_023935 at 5194.568 kb on + strand, within TX73_023935
Per-strain Table
Position Strand Gene LocusTag Fraction MDC_bicarb with butyrate remove 5,191,399 + TX73_023920 0.68 -3.1 5,191,488 + TX73_023920 0.79 -0.5 5,191,491 - TX73_023920 0.79 -1.5 5,191,580 - TX73_023920 0.90 +0.2 5,191,620 + -0.6 5,191,620 + -0.6 5,191,628 - -1.1 5,191,628 - -0.5 5,191,628 - -1.5 5,191,640 - -0.9 5,191,643 + -1.6 5,191,669 + +0.9 5,191,674 + -1.4 5,191,833 - +1.0 5,191,883 + +0.1 5,191,912 - +0.6 5,192,018 - +0.1 5,192,021 + -0.3 5,192,061 + TX73_023925 0.17 -0.2 5,192,078 - TX73_023925 0.22 +2.1 5,192,088 - TX73_023925 0.25 +0.2 5,192,123 - TX73_023925 0.35 +0.7 5,192,123 - TX73_023925 0.35 -0.8 5,192,123 - TX73_023925 0.35 +0.3 5,192,126 + TX73_023925 0.36 -0.2 5,192,128 - TX73_023925 0.36 +0.6 5,192,134 - TX73_023925 0.38 +0.7 5,192,163 + TX73_023925 0.46 -1.0 5,192,200 + TX73_023925 0.57 +0.3 5,192,203 - TX73_023925 0.58 +2.2 5,192,225 - TX73_023925 0.64 +0.1 5,192,250 - TX73_023925 0.71 -0.2 5,192,279 + TX73_023925 0.79 +0.7 5,192,376 - -0.5 5,192,388 + +0.9 5,192,453 - -1.0 5,192,493 + -2.1 5,192,557 + TX73_023930 0.15 -0.5 5,192,568 - TX73_023930 0.16 -2.9 5,192,635 + TX73_023930 0.21 -0.5 5,192,643 - TX73_023930 0.22 -0.7 5,192,749 - TX73_023930 0.31 -2.7 5,192,762 - TX73_023930 0.32 -0.0 5,192,809 + TX73_023930 0.36 -2.4 5,192,863 - TX73_023930 0.41 -1.4 5,192,877 + TX73_023930 0.42 -1.3 5,192,881 + TX73_023930 0.42 -1.4 5,192,938 - TX73_023930 0.47 -0.2 5,192,962 + TX73_023930 0.49 -2.7 5,192,977 + TX73_023930 0.50 -1.2 5,192,987 + TX73_023930 0.51 -1.6 5,193,010 + TX73_023930 0.53 -2.7 5,193,010 + TX73_023930 0.53 -2.0 5,193,049 + TX73_023930 0.56 -2.0 5,193,056 + TX73_023930 0.57 -1.9 5,193,141 + TX73_023930 0.64 +0.4 5,193,141 + TX73_023930 0.64 -3.2 5,193,154 - TX73_023930 0.65 -2.1 5,193,224 - TX73_023930 0.71 -2.9 5,193,241 + TX73_023930 0.72 -0.3 5,193,269 - TX73_023930 0.75 -2.3 5,193,471 - -1.0 5,193,473 + -1.3 5,193,531 + -0.1 5,193,534 - +0.2 5,193,534 - +0.6 5,193,568 + -1.5 5,193,852 - TX73_023935 0.23 -0.8 5,193,864 - TX73_023935 0.24 -1.1 5,193,899 + TX73_023935 0.27 -0.0 5,193,899 + TX73_023935 0.27 +0.2 5,193,907 - TX73_023935 0.28 +0.1 5,194,099 - TX73_023935 0.43 -0.2 5,194,106 + TX73_023935 0.44 +0.0 5,194,106 + TX73_023935 0.44 -0.6 5,194,114 - TX73_023935 0.45 -1.5 5,194,141 + TX73_023935 0.47 -0.6 5,194,141 + TX73_023935 0.47 -0.4 5,194,149 - TX73_023935 0.47 -0.2 5,194,149 - TX73_023935 0.47 -0.9 5,194,149 - TX73_023935 0.47 +0.8 5,194,215 + TX73_023935 0.53 -1.4 5,194,232 + TX73_023935 0.54 -0.7 5,194,234 - TX73_023935 0.54 -0.8 5,194,271 + TX73_023935 0.57 -0.2 5,194,288 - TX73_023935 0.59 +0.3 5,194,288 - TX73_023935 0.59 +1.0 5,194,318 - TX73_023935 0.61 -2.2 5,194,390 - TX73_023935 0.67 -0.8 5,194,436 - TX73_023935 0.71 -0.3 5,194,532 - TX73_023935 0.78 -0.0 5,194,568 + TX73_023935 0.81 -0.6
Or see this region's nucleotide sequence