Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_013090

Experiment: MDC_bicarb with butyrate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MDC_bicarb with butyrate
2,871,864	-		TX73_013080	0.50	-0.9
2,871,864	-		TX73_013080	0.50	-0.7
2,871,864	-		TX73_013080	0.50	-0.5
2,871,866	+		TX73_013080	0.50	+0.7
2,871,866	+		TX73_013080	0.50	+0.6
2,871,866	-		TX73_013080	0.50	-0.9
2,871,874	-		TX73_013080	0.51	-0.7
2,871,874	-		TX73_013080	0.51	-2.4
2,871,874	-		TX73_013080	0.51	+0.7
2,871,906	-		TX73_013080	0.56	-2.2
2,871,928	+		TX73_013080	0.59	-0.0
2,871,928	-		TX73_013080	0.59	-0.2
2,871,978	-		TX73_013080	0.66	-0.6
2,871,994	+		TX73_013080	0.68	-3.4
2,871,997	-		TX73_013080	0.69	+0.2
2,872,007	-		TX73_013080	0.70	+0.1
2,872,007	-		TX73_013080	0.70	-1.4
2,872,028	+		TX73_013080	0.73	+0.1
2,872,029	+		TX73_013080	0.73	+0.8
2,872,039	+		TX73_013080	0.75	+1.0
2,872,107	-		TX73_013080	0.84	-0.0
2,872,107	-		TX73_013080	0.84	+1.6
2,872,126	-		TX73_013080	0.87	-1.4
2,872,126	-		TX73_013080	0.87	-0.3
2,872,279	+				-0.1
2,872,310	+				+0.3
2,872,313	-				-0.5
2,872,318	-				-0.3
2,872,320	+				-0.3
2,872,358	-				+0.9
2,872,427	+				-0.1
2,872,466	-		TX73_013085	0.18	+1.4
2,872,783	+				+0.4
2,872,827	+				+1.2
2,872,827	+				-0.7
2,872,880	+				+0.2
2,872,904	-				-0.7
2,872,910	-				+0.0
2,872,917	+				-2.4
2,872,960	+		TX73_013090	0.14	-0.4
2,872,987	-		TX73_013090	0.18	-0.7
2,872,996	+		TX73_013090	0.19	-0.1
2,873,020	+		TX73_013090	0.22	-0.2
2,873,028	-		TX73_013090	0.24	-1.2
2,873,037	-		TX73_013090	0.25	+0.3
2,873,039	+		TX73_013090	0.25	+1.4
2,873,039	+		TX73_013090	0.25	-1.6
2,873,039	+		TX73_013090	0.25	+0.4
2,873,045	-		TX73_013090	0.26	-0.9
2,873,047	-		TX73_013090	0.26	-0.2
2,873,053	-		TX73_013090	0.27	+0.2
2,873,053	-		TX73_013090	0.27	+1.2
2,873,053	-		TX73_013090	0.27	-0.4
2,873,062	+		TX73_013090	0.28	-0.1
2,873,066	-		TX73_013090	0.29	-1.1
2,873,076	+		TX73_013090	0.30	-0.2
2,873,096	+		TX73_013090	0.33	-0.5
2,873,106	+		TX73_013090	0.34	+0.2
2,873,106	-		TX73_013090	0.34	+0.7
2,873,130	-		TX73_013090	0.38	+0.2
2,873,147	-		TX73_013090	0.40	-2.2
2,873,158	-		TX73_013090	0.41	+0.2
2,873,162	+		TX73_013090	0.42	+1.7
2,873,173	-		TX73_013090	0.44	-0.8
2,873,195	+		TX73_013090	0.47	+0.8
2,873,222	+		TX73_013090	0.50	+0.5
2,873,299	+		TX73_013090	0.61	+0.0
2,873,299	+		TX73_013090	0.61	+0.1
2,873,307	+		TX73_013090	0.62	-0.4
2,873,315	-		TX73_013090	0.63	-0.7
2,873,315	-		TX73_013090	0.63	-0.2
2,873,318	+		TX73_013090	0.64	+0.2
2,873,318	+		TX73_013090	0.64	-0.3
2,873,318	+		TX73_013090	0.64	+0.2
2,873,322	+		TX73_013090	0.64	+0.4
2,873,326	-		TX73_013090	0.65	+0.0
2,873,330	-		TX73_013090	0.65	-0.6
2,873,348	+		TX73_013090	0.68	-0.4
2,873,348	+		TX73_013090	0.68	-0.1
2,873,349	-		TX73_013090	0.68	-1.9
2,873,349	-		TX73_013090	0.68	-0.8
2,873,356	-		TX73_013090	0.69	-0.6
2,873,356	-		TX73_013090	0.69	-1.0
2,873,356	-		TX73_013090	0.69	-0.7
2,873,455	+		TX73_013090	0.83	-0.3
2,873,465	+		TX73_013090	0.84	-0.5
2,873,469	+		TX73_013090	0.85	+0.2
2,873,477	-		TX73_013090	0.86	+0.3
2,873,503	+		TX73_013090	0.89	+0.9
2,873,504	-		TX73_013090	0.89	+0.9
2,873,506	-		TX73_013090	0.90	-1.4
2,873,506	-		TX73_013090	0.90	+0.9
2,873,530	-				+2.0
2,873,541	+				-0.4
2,873,549	-				-1.1
2,873,549	-				-0.1
2,873,555	-				+0.2
2,873,562	-				-0.0
2,873,564	-				+0.7
2,873,564	-				-0.5
2,873,594	+				-0.4
2,873,602	-				-0.6
2,873,602	-				+1.6
2,873,602	-				-0.6
2,873,606	-				-0.7
2,873,630	-				+0.3
2,873,653	+				-0.0
2,873,655	-				+0.0
2,873,688	+				-0.1
2,873,688	+				-0.8
2,873,695	+				-0.1
2,873,697	+				-1.3
2,873,698	+				-2.3
2,873,702	+				-0.9
2,873,705	-				-1.3
2,873,707	+				+0.1
2,873,707	+				-0.3
2,873,707	+				-0.6
2,873,715	-				-0.3
2,873,715	-				+0.3
2,873,719	+				-1.4
2,873,725	+				+0.2
2,873,725	+				-0.8
2,873,725	-				+0.2
2,873,727	-				-0.4
2,873,733	-				+1.1
2,873,737	+				-0.5
2,873,738	+				-0.2
2,873,738	+				+0.1
2,873,738	+				-1.4
2,873,738	+				+0.1
2,873,738	+				-2.1
2,873,746	-				+0.6
2,873,746	-				-0.9
2,873,746	-				+0.9
2,873,746	-				-0.2
2,873,746	-				+0.2
2,873,746	-				-0.4
2,873,746	-				-0.6
2,873,746	-				+0.3
2,873,746	-				-1.3
2,873,746	-				-0.6
2,873,778	-				+0.9
2,873,802	-				-0.0
2,873,817	+				+0.3
2,873,817	+				+0.4
2,873,825	-				+0.8
2,873,825	-				-0.5
2,873,825	-				+0.3
2,873,840	-				+0.1
2,873,840	-				-0.5
2,873,849	-				+0.4
2,873,859	+				-1.6
2,873,878	+				+0.2
2,873,880	-				+0.3
2,873,905	-				-0.0
2,873,905	-				+0.6
2,873,906	+				-0.3
2,873,907	+				+0.2
2,873,907	+				-0.8
2,873,908	+				-0.4
2,873,916	-				+0.1
2,873,916	-				+1.0
2,873,916	-				+0.0
2,873,916	-				-0.6
2,873,916	-				+0.7
2,873,924	-				+0.6
2,873,929	-				+0.6
2,873,929	-				+0.3
2,874,060	+				-0.9
2,874,084	+				-0.4
2,874,119	+				-1.5
2,874,146	+				-0.0
2,874,146	+				-0.3
2,874,154	-				-0.2
2,874,156	+				-0.2
2,874,165	-				-0.4
2,874,194	+				-4.2
2,874,210	+				-2.1
2,874,221	+				-2.4
2,874,272	-				+0.2
2,874,314	+		TX73_013095	0.13	-1.5
2,874,321	+		TX73_013095	0.13	-2.0
2,874,332	+		TX73_013095	0.14	-0.9
2,874,345	-		TX73_013095	0.15	-1.2
2,874,353	+		TX73_013095	0.16	-2.0
2,874,404	+		TX73_013095	0.21	-1.6
2,874,426	+		TX73_013095	0.23	-1.9
2,874,449	+		TX73_013095	0.25	-0.8
2,874,449	+		TX73_013095	0.25	+0.0
2,874,451	+		TX73_013095	0.25	+2.6
2,874,454	+		TX73_013095	0.25	-1.8
2,874,454	+		TX73_013095	0.25	-1.6
2,874,457	-		TX73_013095	0.25	+0.7
2,874,457	-		TX73_013095	0.25	+0.2
2,874,457	-		TX73_013095	0.25	-0.6
2,874,457	-		TX73_013095	0.25	-1.4
2,874,457	-		TX73_013095	0.25	-1.2
2,874,457	-		TX73_013095	0.25	+0.4
2,874,462	-		TX73_013095	0.26	-1.9
2,874,462	-		TX73_013095	0.26	-0.3
2,874,462	-		TX73_013095	0.26	-1.9
2,874,467	-		TX73_013095	0.26	-0.6
2,874,467	-		TX73_013095	0.26	+0.5
2,874,482	+		TX73_013095	0.28	-2.4
2,874,495	+		TX73_013095	0.29	-0.4
2,874,495	+		TX73_013095	0.29	-1.3
2,874,503	-		TX73_013095	0.29	+0.2
2,874,517	+		TX73_013095	0.31	-0.2
2,874,528	+		TX73_013095	0.32	-1.7
2,874,533	+		TX73_013095	0.32	-0.9
2,874,536	-		TX73_013095	0.32	+0.2
2,874,536	-		TX73_013095	0.32	+0.1
2,874,542	-		TX73_013095	0.33	-2.4