Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_012700

Experiment: MDC_bicarb with butyrate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MDC_bicarb with butyrate
2,789,820	+		TX73_012695	0.36	+0.6
2,789,881	+		TX73_012695	0.40	+1.2
2,789,881	+		TX73_012695	0.40	+0.5
2,789,889	-		TX73_012695	0.41	-0.6
2,789,889	-		TX73_012695	0.41	-0.4
2,789,890	+		TX73_012695	0.41	-0.5
2,789,913	-		TX73_012695	0.43	-0.5
2,789,963	+		TX73_012695	0.46	-0.2
2,789,963	+		TX73_012695	0.46	+0.3
2,789,963	+		TX73_012695	0.46	+0.7
2,789,963	+		TX73_012695	0.46	-0.2
2,789,971	-		TX73_012695	0.47	+0.2
2,789,971	-		TX73_012695	0.47	-1.4
2,789,997	+		TX73_012695	0.49	+1.6
2,789,997	+		TX73_012695	0.49	-1.0
2,789,997	+		TX73_012695	0.49	+0.9
2,789,997	+		TX73_012695	0.49	+0.1
2,790,007	+		TX73_012695	0.49	-0.3
2,790,020	-		TX73_012695	0.50	+0.2
2,790,025	-		TX73_012695	0.51	+0.5
2,790,029	+		TX73_012695	0.51	-0.8
2,790,046	-		TX73_012695	0.52	-0.3
2,790,048	+		TX73_012695	0.52	+1.1
2,790,048	+		TX73_012695	0.52	-0.1
2,790,048	+		TX73_012695	0.52	+0.1
2,790,049	-		TX73_012695	0.52	+0.5
2,790,049	-		TX73_012695	0.52	-0.9
2,790,056	-		TX73_012695	0.53	-0.9
2,790,073	+		TX73_012695	0.54	-0.3
2,790,152	+		TX73_012695	0.60	-0.1
2,790,200	-		TX73_012695	0.63	-0.2
2,790,205	+		TX73_012695	0.64	+1.1
2,790,213	-		TX73_012695	0.64	-0.3
2,790,225	-		TX73_012695	0.65	-0.1
2,790,235	-		TX73_012695	0.66	-0.5
2,790,250	-		TX73_012695	0.67	+0.1
2,790,275	+		TX73_012695	0.69	-0.2
2,790,289	+		TX73_012695	0.70	-0.3
2,790,312	-		TX73_012695	0.72	+0.4
2,790,319	-		TX73_012695	0.72	+0.2
2,790,321	+		TX73_012695	0.72	-0.1
2,790,325	+		TX73_012695	0.73	+0.8
2,790,325	+		TX73_012695	0.73	+0.2
2,790,363	+		TX73_012695	0.75	-0.2
2,790,363	+		TX73_012695	0.75	+1.1
2,790,376	+		TX73_012695	0.76	+0.7
2,790,391	+		TX73_012695	0.77	+0.3
2,790,391	+		TX73_012695	0.77	+0.9
2,790,393	+		TX73_012695	0.78	-0.5
2,790,397	-		TX73_012695	0.78	-0.0
2,790,406	-		TX73_012695	0.78	-1.7
2,790,406	-		TX73_012695	0.78	-0.0
2,790,409	+		TX73_012695	0.79	-0.2
2,790,509	-		TX73_012695	0.86	-0.1
2,790,514	-		TX73_012695	0.86	-1.1
2,790,516	+		TX73_012695	0.87	-0.0
2,790,516	+		TX73_012695	0.87	-0.5
2,790,521	+		TX73_012695	0.87	-0.2
2,790,521	+		TX73_012695	0.87	+0.9
2,790,521	+		TX73_012695	0.87	+0.1
2,790,524	-		TX73_012695	0.87	+0.2
2,790,524	-		TX73_012695	0.87	+0.5
2,790,524	-		TX73_012695	0.87	+0.1
2,790,526	+		TX73_012695	0.87	-0.2
2,790,526	+		TX73_012695	0.87	+1.6
2,790,526	+		TX73_012695	0.87	-0.4
2,790,526	-		TX73_012695	0.87	+1.2
2,790,529	-		TX73_012695	0.87	-0.8
2,790,531	+		TX73_012695	0.88	+1.0
2,790,531	+		TX73_012695	0.88	-0.3
2,790,531	+		TX73_012695	0.88	-0.1
2,790,534	-		TX73_012695	0.88	-0.2
2,790,534	-		TX73_012695	0.88	-0.2
2,790,534	-		TX73_012695	0.88	-0.4
2,790,539	-		TX73_012695	0.88	+0.7
2,790,544	-		TX73_012695	0.89	-0.5
2,790,559	+		TX73_012695	0.90	-2.0
2,790,567	+				-1.4
2,790,567	+				+0.3
2,790,567	-				-0.2
2,790,575	-				+0.2
2,790,604	+				-0.3
2,790,609	+				+0.1
2,790,612	-				+0.0
2,790,636	+				+1.0
2,790,646	+				+0.0
2,790,682	+				-0.6
2,790,690	-				+0.2
2,790,698	+				+0.2
2,790,700	-				-0.1
2,790,714	-				-0.9
2,790,734	+				+0.3
2,790,755	+				+0.3
2,790,763	-				-0.2
2,790,818	+				-2.5
2,790,820	+				+0.6
2,790,826	+				+0.1
2,790,826	-				-0.7
2,790,826	-				+0.3
2,790,828	-				-0.2
2,790,828	-				+0.4
2,790,841	+				-1.1
2,790,841	+				-1.2
2,790,851	+				+0.7
2,790,852	+				-0.8
2,790,852	+				+0.3
2,790,852	+				-0.6
2,790,860	-				+0.2
2,790,862	-				+0.2
2,790,877	-		TX73_012700	0.12	-0.0
2,790,884	+		TX73_012700	0.13	-0.7
2,790,884	+		TX73_012700	0.13	-1.6
2,790,916	+		TX73_012700	0.17	-0.4
2,790,917	-		TX73_012700	0.17	-1.2
2,790,917	-		TX73_012700	0.17	-2.1
2,790,917	-		TX73_012700	0.17	-0.8
2,790,949	+		TX73_012700	0.22	+0.3
2,790,950	-		TX73_012700	0.22	-0.6
2,790,951	+		TX73_012700	0.22	+0.4
2,790,975	-		TX73_012700	0.26	-0.5
2,790,978	+		TX73_012700	0.26	+0.2
2,790,978	+		TX73_012700	0.26	+0.6
2,790,978	+		TX73_012700	0.26	-0.8
2,790,979	+		TX73_012700	0.26	+0.4
2,790,981	-		TX73_012700	0.27	-0.3
2,790,986	-		TX73_012700	0.27	-1.9
2,790,986	-		TX73_012700	0.27	-0.7
2,790,986	-		TX73_012700	0.27	+0.3
2,790,987	-		TX73_012700	0.28	+0.4
2,790,987	-		TX73_012700	0.28	+0.9
2,790,988	+		TX73_012700	0.28	+0.1
2,791,025	+		TX73_012700	0.33	-0.1
2,791,032	+		TX73_012700	0.34	-0.3
2,791,033	-		TX73_012700	0.34	+0.3
2,791,041	-		TX73_012700	0.35	+0.5
2,791,068	+		TX73_012700	0.39	+0.8
2,791,099	+		TX73_012700	0.44	-0.7
2,791,114	+		TX73_012700	0.46	+0.6
2,791,114	+		TX73_012700	0.46	+1.0
2,791,114	+		TX73_012700	0.46	-0.5
2,791,114	+		TX73_012700	0.46	-0.2
2,791,122	-		TX73_012700	0.47	-2.4
2,791,122	-		TX73_012700	0.47	+0.0
2,791,122	-		TX73_012700	0.47	-0.5
2,791,130	-		TX73_012700	0.48	-0.1
2,791,134	+		TX73_012700	0.49	+0.1
2,791,134	+		TX73_012700	0.49	+0.9
2,791,142	-		TX73_012700	0.50	-0.1
2,791,147	+		TX73_012700	0.51	-0.1
2,791,159	+		TX73_012700	0.52	-1.4
2,791,218	+		TX73_012700	0.61	-0.4
2,791,227	-		TX73_012700	0.62	-1.1
2,791,227	-		TX73_012700	0.62	-0.7
2,791,241	+		TX73_012700	0.64	+0.5
2,791,249	-		TX73_012700	0.66	-0.7
2,791,255	-		TX73_012700	0.66	-0.7
2,791,285	-		TX73_012700	0.71	+0.5
2,791,311	+		TX73_012700	0.74	-0.0
2,791,316	+		TX73_012700	0.75	-1.0
2,791,319	-		TX73_012700	0.76	-0.1
2,791,359	+		TX73_012700	0.81	+0.5
2,791,367	-		TX73_012700	0.83	-2.0
2,791,379	-		TX73_012700	0.84	-0.2
2,791,391	+		TX73_012700	0.86	-0.6
2,791,391	+		TX73_012700	0.86	+0.2
2,791,391	+		TX73_012700	0.86	-0.6
2,791,399	-		TX73_012700	0.87	+0.1
2,791,399	-		TX73_012700	0.87	+0.8
2,791,442	-				-3.5
2,791,484	-				-0.8
2,791,494	+				+0.3
2,791,519	+				-0.7
2,791,521	-				-0.3
2,791,521	-				+0.0
2,791,551	+				+0.4
2,791,581	+				-0.4
2,791,589	-				-1.1
2,791,626	+				+0.1
2,791,647	-				+0.7
2,791,674	+				-0.5
2,791,693	-				+1.4
2,791,702	-				+0.2
2,791,712	+				+0.3
2,791,717	+				-1.6
2,791,719	-				-1.2
2,791,721	-				-1.1
2,791,741	-				+1.6
2,791,810	+				+2.0
2,791,818	-				+3.4
2,791,818	-				+1.1
2,791,830	+				+0.1
2,791,871	-				-0.7
2,791,905	+				-0.1
2,791,913	-				-1.0
2,791,958	-				+0.7
2,791,981	+				+1.0
2,792,006	-				-0.0