Experiment: MDC_bicarb with butyrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_007835 and TX73_007840 are separated by 77 nucleotides TX73_007840 and TX73_007845 are separated by 153 nucleotides TX73_007845 and TX73_007850 are separated by 15 nucleotides TX73_007850 and TX73_007855 are separated by 131 nucleotides TX73_007855 and TX73_007860 are separated by 27 nucleotides
TX73_007835: TX73_007835 - chlorophyllide a reductase subunit Z, at 1,692,816 to 1,694,264
_007835
TX73_007840: TX73_007840 - hypothetical protein, at 1,694,342 to 1,694,566
_007840
TX73_007845: TX73_007845 - light-harvesting antenna LH1, beta subunit, at 1,694,720 to 1,694,917
_007845
TX73_007850: TX73_007850 - light-harvesting antenna LH1, alpha subunit, at 1,694,933 to 1,695,124
_007850
TX73_007855: TX73_007855 - photosynthetic reaction center subunit L, at 1,695,256 to 1,696,089
_007855
TX73_007860: TX73_007860 - photosynthetic reaction center subunit M, at 1,696,117 to 1,697,040
_007860
Position (kb) 1695
1696
1697 Strain fitness (log2 ratio) -2
-1
0
1 at 1694.319 kb on + strand at 1694.319 kb on + strand at 1694.319 kb on + strand at 1694.578 kb on + strand at 1695.203 kb on + strand at 1696.084 kb on + strand at 1697.021 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MDC_bicarb with butyrate remove 1,694,319 + +0.0 1,694,319 + -2.0 1,694,319 + +1.3 1,694,578 + +1.2 1,695,203 + -1.5 1,696,084 + +0.3 1,697,021 + +0.6
Or see this region's nucleotide sequence