Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_006010

Experiment: MDC_bicarb with butyrate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MDC_bicarb with butyrate
1,277,466	+		TX73_006000	0.27	+1.6
1,277,518	+		TX73_006000	0.48	+0.8
1,277,546	-		TX73_006000	0.59	+0.8
1,277,574	-		TX73_006000	0.70	-0.3
1,278,218	-				+2.2
1,278,270	+				-0.1
1,278,280	+				-0.6
1,278,280	+				-0.5
1,278,280	+				-0.0
1,278,280	+				+1.1
1,278,288	-				-0.7
1,278,288	-				-0.1
1,278,288	-				-0.5
1,278,309	+				-0.0
1,278,311	-				-1.1
1,278,312	-				-0.2
1,278,381	-				-0.5
1,278,392	+				+0.1
1,278,392	+				-1.1
1,278,403	+				-0.7
1,278,494	+				+0.8
1,278,502	-				+0.3
1,278,502	-				-0.4
1,278,511	-				-1.7
1,278,553	+				-0.5
1,278,553	+				+1.4
1,278,563	+				-0.4
1,278,573	-				-0.1
1,278,576	+				+0.6
1,278,582	-				+0.2
1,278,645	-		TX73_006010	0.11	-0.9
1,278,670	+		TX73_006010	0.12	-0.5
1,278,675	+		TX73_006010	0.12	-0.6
1,278,675	+		TX73_006010	0.12	-0.3
1,278,675	+		TX73_006010	0.12	-0.3
1,278,680	+		TX73_006010	0.13	+1.6
1,278,683	-		TX73_006010	0.13	-0.9
1,278,690	+		TX73_006010	0.13	+0.5
1,278,690	+		TX73_006010	0.13	-0.4
1,278,698	-		TX73_006010	0.14	+0.0
1,278,698	-		TX73_006010	0.14	+0.5
1,278,728	+		TX73_006010	0.15	+0.5
1,278,748	+		TX73_006010	0.16	+0.4
1,278,772	-		TX73_006010	0.17	+1.0
1,278,774	-		TX73_006010	0.17	+1.0
1,278,777	-		TX73_006010	0.17	+1.1
1,278,786	-		TX73_006010	0.18	-1.3
1,278,791	-		TX73_006010	0.18	+0.2
1,278,802	+		TX73_006010	0.18	+2.0
1,278,802	+		TX73_006010	0.18	+1.0
1,278,810	-		TX73_006010	0.19	-1.9
1,278,821	+		TX73_006010	0.19	-2.0
1,278,821	+		TX73_006010	0.19	+0.1
1,278,829	-		TX73_006010	0.20	+0.1
1,278,829	-		TX73_006010	0.20	-1.0
1,278,829	-		TX73_006010	0.20	+1.3
1,278,829	-		TX73_006010	0.20	+0.5
1,278,829	-		TX73_006010	0.20	-1.2
1,278,850	-		TX73_006010	0.21	+0.6
1,278,858	+		TX73_006010	0.21	-0.3
1,278,868	+		TX73_006010	0.22	-1.6
1,278,883	-		TX73_006010	0.22	+1.0
1,278,898	-		TX73_006010	0.23	+1.8
1,278,920	+		TX73_006010	0.24	-1.3
1,278,928	-		TX73_006010	0.24	+1.2
1,278,958	+		TX73_006010	0.26	-1.0
1,278,979	+		TX73_006010	0.27	-2.1
1,279,046	+		TX73_006010	0.30	+0.8
1,279,051	+		TX73_006010	0.30	+0.3
1,279,058	-		TX73_006010	0.31	+2.4
1,279,091	+		TX73_006010	0.32	-0.2
1,279,108	+		TX73_006010	0.33	-0.5
1,279,114	-		TX73_006010	0.33	+0.6
1,279,116	+		TX73_006010	0.33	-1.7
1,279,128	+		TX73_006010	0.34	-1.7
1,279,133	+		TX73_006010	0.34	+0.8
1,279,143	+		TX73_006010	0.35	-0.4
1,279,185	-		TX73_006010	0.37	-0.8
1,279,190	+		TX73_006010	0.37	+0.6
1,279,208	-		TX73_006010	0.38	+0.3
1,279,208	-		TX73_006010	0.38	+0.8
1,279,213	-		TX73_006010	0.38	-1.6
1,279,228	+		TX73_006010	0.39	+0.4
1,279,228	+		TX73_006010	0.39	-0.6
1,279,228	+		TX73_006010	0.39	-2.2
1,279,236	-		TX73_006010	0.39	+0.1
1,279,236	-		TX73_006010	0.39	-0.2
1,279,241	-		TX73_006010	0.39	+0.6
1,279,251	+		TX73_006010	0.40	-1.0
1,279,267	+		TX73_006010	0.40	+1.5
1,279,275	-		TX73_006010	0.41	-0.9
1,279,275	-		TX73_006010	0.41	-0.9
1,279,287	-		TX73_006010	0.41	-1.4
1,279,293	+		TX73_006010	0.42	+0.4
1,279,334	-		TX73_006010	0.44	+1.3
1,279,343	-		TX73_006010	0.44	+0.3
1,279,375	-		TX73_006010	0.46	+0.1
1,279,382	+		TX73_006010	0.46	+1.1
1,279,382	+		TX73_006010	0.46	-0.4
1,279,390	-		TX73_006010	0.46	-0.4
1,279,390	-		TX73_006010	0.46	+0.0
1,279,422	+		TX73_006010	0.48	-0.7
1,279,424	-		TX73_006010	0.48	-0.6
1,279,463	+		TX73_006010	0.50	-0.8
1,279,463	+		TX73_006010	0.50	-1.5
1,279,468	+		TX73_006010	0.50	+1.0
1,279,468	+		TX73_006010	0.50	-2.9
1,279,468	+		TX73_006010	0.50	-0.9
1,279,476	-		TX73_006010	0.50	-0.5
1,279,476	-		TX73_006010	0.50	-1.0
1,279,476	-		TX73_006010	0.50	+1.1
1,279,476	-		TX73_006010	0.50	+1.1
1,279,476	-		TX73_006010	0.50	-0.5
1,279,476	-		TX73_006010	0.50	+1.0
1,279,476	-		TX73_006010	0.50	-1.0
1,279,476	-		TX73_006010	0.50	+0.6
1,279,476	-		TX73_006010	0.50	-0.6
1,279,478	+		TX73_006010	0.50	-0.4
1,279,524	-		TX73_006010	0.53	-0.0
1,279,524	-		TX73_006010	0.53	-0.7
1,279,545	+		TX73_006010	0.54	-1.5
1,279,560	+		TX73_006010	0.54	+0.0
1,279,563	-		TX73_006010	0.54	-1.0
1,279,580	-		TX73_006010	0.55	-0.6
1,279,615	-		TX73_006010	0.57	+1.1
1,279,675	+		TX73_006010	0.60	+0.4
1,279,683	+		TX73_006010	0.60	-0.4
1,279,683	-		TX73_006010	0.60	+0.6
1,279,683	-		TX73_006010	0.60	-1.1
1,279,760	+		TX73_006010	0.64	+0.4
1,279,767	+		TX73_006010	0.64	-1.6
1,279,767	+		TX73_006010	0.64	+0.5
1,279,775	-		TX73_006010	0.64	-1.7
1,279,796	+		TX73_006010	0.65	+0.8
1,279,797	+		TX73_006010	0.65	-1.4
1,279,832	+		TX73_006010	0.67	+1.4
1,279,840	-		TX73_006010	0.68	+2.3
1,279,840	-		TX73_006010	0.68	+2.3
1,279,851	-		TX73_006010	0.68	-1.3
1,279,866	-		TX73_006010	0.69	+1.8
1,279,887	-		TX73_006010	0.70	+0.1
1,279,899	-		TX73_006010	0.70	+0.1
1,279,905	+		TX73_006010	0.71	+0.6
1,279,922	+		TX73_006010	0.71	+2.1
1,279,927	+		TX73_006010	0.72	-0.1
1,279,927	+		TX73_006010	0.72	-0.4
1,279,935	-		TX73_006010	0.72	+0.4
1,279,935	-		TX73_006010	0.72	-1.9
1,279,935	-		TX73_006010	0.72	+0.5
1,279,935	-		TX73_006010	0.72	-0.5
1,279,935	-		TX73_006010	0.72	+0.9
1,279,945	-		TX73_006010	0.72	+0.6
1,279,950	-		TX73_006010	0.73	+0.0
1,279,966	+		TX73_006010	0.73	+1.1
1,279,969	-		TX73_006010	0.74	-0.6
1,279,969	-		TX73_006010	0.74	+1.9
1,279,991	-		TX73_006010	0.75	-0.7
1,280,006	+		TX73_006010	0.75	-1.0
1,280,014	-		TX73_006010	0.76	+0.5
1,280,016	+		TX73_006010	0.76	+0.6
1,280,019	-		TX73_006010	0.76	-0.5
1,280,019	-		TX73_006010	0.76	+1.0
1,280,043	-		TX73_006010	0.77	-2.2
1,280,043	-		TX73_006010	0.77	+0.5
1,280,049	+		TX73_006010	0.77	+1.0
1,280,049	+		TX73_006010	0.77	+0.7
1,280,075	+		TX73_006010	0.79	-0.9
1,280,075	+		TX73_006010	0.79	+0.0
1,280,077	-		TX73_006010	0.79	-2.2
1,280,083	-		TX73_006010	0.79	+0.1
1,280,083	-		TX73_006010	0.79	-1.5
1,280,105	-		TX73_006010	0.80	-0.9
1,280,130	-		TX73_006010	0.81	-2.5
1,280,148	-		TX73_006010	0.82	+0.2
1,280,153	-		TX73_006010	0.82	-1.6
1,280,160	-		TX73_006010	0.83	+1.0
1,280,186	+		TX73_006010	0.84	-0.6
1,280,194	-		TX73_006010	0.84	+1.1
1,280,230	-		TX73_006010	0.86	+1.7
1,280,230	-		TX73_006010	0.86	-0.6
1,280,241	+		TX73_006010	0.86	+0.5
1,280,241	+		TX73_006010	0.86	+2.0
1,280,251	+		TX73_006010	0.87	+0.2
1,280,251	+		TX73_006010	0.87	+0.2
1,280,251	+		TX73_006010	0.87	-0.4
1,280,259	-		TX73_006010	0.87	+0.4
1,280,260	+		TX73_006010	0.87	-0.1
1,280,260	+		TX73_006010	0.87	-0.3
1,280,264	-		TX73_006010	0.88	-0.5
1,280,285	+		TX73_006010	0.89	+0.3
1,280,304	+		TX73_006010	0.89	-1.5
1,280,309	+		TX73_006010	0.90	+0.2
1,280,309	+		TX73_006010	0.90	-0.1
1,280,312	-		TX73_006010	0.90	+0.3
1,280,312	-		TX73_006010	0.90	-0.6
1,280,314	+		TX73_006010	0.90	+0.8
1,280,317	-				+0.3
1,280,322	-				-0.5
1,280,330	+				+0.4
1,280,332	-				+0.6
1,280,342	+				-0.7
1,280,342	+				-2.0
1,280,349	-				+1.1
1,280,350	-				-2.1
1,280,350	-				-0.2
1,280,350	-				+0.1
1,280,383	-				-0.4
1,280,387	+				-1.2
1,280,395	-				+1.1
1,280,400	+				-0.2
1,280,416	-				-0.1
1,280,419	+				-0.2
1,280,419	+				-0.1
1,280,426	-				+0.5
1,280,427	-				-0.8
1,280,434	-				+0.4
1,280,445	-				-0.5
1,280,448	+				-0.7
1,280,457	+				-0.9
1,280,462	+				+0.4
1,280,462	+				+0.6
1,280,465	-				-0.5
1,280,465	-				+1.6
1,280,465	-				+0.9
1,280,470	-				-0.2
1,280,473	+				-0.7
1,280,474	-				-0.4
1,280,476	+				+0.3
1,280,481	-				+0.7
1,280,482	+				+0.3
1,280,483	+				-0.5
1,280,497	-				-0.6
1,280,505	+				-0.8
1,280,505	+				-0.4
1,280,530	+				-0.4
1,280,531	+				-1.1
1,280,531	+				+0.9
1,280,531	+				-0.3
1,280,531	+				+0.2
1,280,531	+				+0.3
1,280,531	+				-0.9
1,280,531	+				+0.4
1,280,535	+				-0.2
1,280,538	+				+0.2
1,280,538	-				-0.7
1,280,539	-				-0.7
1,280,539	-				+0.1
1,280,539	-				-0.3
1,280,539	-				-0.2
1,280,539	-				+0.1
1,280,539	-				-1.7
1,280,539	-				-0.9
1,280,539	-				+0.1
1,280,545	-				-0.2
1,280,545	-				+0.3
1,280,546	-				-0.5
1,280,546	-				+0.0
1,280,550	+				-0.3
1,280,550	+				-0.0
1,280,558	+				+0.2
1,280,558	-				+0.7
1,280,560	+				-0.3
1,280,560	+				-0.0
1,280,560	+				-0.7
1,280,563	-				-1.0
1,280,565	+				-1.5
1,280,565	+				+0.1
1,280,565	+				-0.7
1,280,565	+				-0.8
1,280,565	+				+0.0
1,280,565	+				+0.4
1,280,568	-				-0.6
1,280,570	+				-0.9
1,280,572	-				+0.2
1,280,573	-				+0.3
1,280,573	-				-0.1
1,280,573	-				-1.0
1,280,573	-				-0.0
1,280,576	+				+0.1
1,280,576	+				-1.4
1,280,578	-				-0.4
1,280,578	-				-0.8
1,280,578	-				+0.5
1,280,582	+				-0.7
1,280,584	-				-0.5
1,280,590	-				-0.0
1,280,599	+				-1.1
1,280,607	+				-0.4
1,280,607	+				-0.2
1,280,615	-				-0.3
1,280,626	-				+0.6
1,280,631	+				+0.6
1,280,636	+				+0.2
1,280,672	+				+0.1
1,280,736	+				+1.4
1,280,744	-				+0.1
1,280,745	-				-0.4
1,280,753	+				-0.1
1,280,763	-				+0.0
1,280,765	+				-0.4
1,280,765	+				+0.8
1,280,773	-				+0.3
1,280,774	+				-1.3
1,280,776	+				-0.3
1,280,776	+				+0.5
1,280,782	+				+0.7
1,280,783	+				-0.3
1,280,788	+				+0.2
1,280,788	+				-0.3
1,280,789	-				-0.1
1,280,793	+				-0.5
1,280,795	-				+1.0
1,280,803	+				+0.5
1,280,808	+				+0.0
1,280,820	+				-0.9
1,280,820	+				-0.7
1,280,822	+				+0.4
1,280,822	+				+0.4
1,280,822	-				+0.4
1,280,830	+				-1.0
1,280,838	-				+0.3
1,280,839	+				-0.6
1,280,844	+				-0.9
1,280,852	-				-2.7
1,280,863	+				+1.1
1,280,864	+				-1.0
1,280,874	+				-1.0
1,280,880	-				-0.0
1,280,881	+				-0.3
1,280,882	-				+2.2
1,280,882	-				-1.1
1,280,882	-				-1.0
1,280,884	+				+0.4
1,280,890	+				-0.2
1,280,899	-				-0.8
1,280,909	+		TX73_006015	0.12	-0.1
1,280,909	+		TX73_006015	0.12	-0.2
1,280,909	+		TX73_006015	0.12	+0.2
1,280,909	+		TX73_006015	0.12	+0.0
1,280,917	-		TX73_006015	0.13	-0.2
1,280,917	-		TX73_006015	0.13	+0.4
1,280,917	-		TX73_006015	0.13	+0.8
1,280,917	-		TX73_006015	0.13	+0.6
1,280,932	+		TX73_006015	0.15	-0.7
1,280,940	-		TX73_006015	0.17	-1.3
1,280,958	+		TX73_006015	0.19	-0.6
1,280,958	+		TX73_006015	0.19	-0.4
1,280,958	+		TX73_006015	0.19	-0.9
1,280,981	-		TX73_006015	0.23	+0.1
1,280,982	-		TX73_006015	0.23	+0.3
1,280,990	+		TX73_006015	0.25	+1.3
1,281,009	-		TX73_006015	0.28	-0.6
1,281,025	-		TX73_006015	0.30	-0.3
1,281,030	-		TX73_006015	0.31	-1.1
1,281,054	-		TX73_006015	0.35	+0.3
1,281,056	+		TX73_006015	0.35	-0.1
1,281,077	-		TX73_006015	0.38	+0.0
1,281,093	+		TX73_006015	0.41	-0.4
1,281,107	-		TX73_006015	0.43	+0.7
1,281,128	+		TX73_006015	0.47	-0.3
1,281,131	+		TX73_006015	0.47	+0.4
1,281,146	+		TX73_006015	0.50	+0.1
1,281,148	+		TX73_006015	0.50	-0.1
1,281,148	+		TX73_006015	0.50	-0.2
1,281,148	+		TX73_006015	0.50	+0.4
1,281,148	+		TX73_006015	0.50	-2.1
1,281,156	-		TX73_006015	0.51	-0.7
1,281,163	+		TX73_006015	0.52	-0.7
1,281,169	+		TX73_006015	0.53	+0.5
1,281,169	+		TX73_006015	0.53	+0.4
1,281,169	+		TX73_006015	0.53	-0.5
1,281,179	+		TX73_006015	0.55	+0.2
1,281,180	+		TX73_006015	0.55	+0.2
1,281,187	-		TX73_006015	0.56	+0.1
1,281,250	+		TX73_006015	0.66	+1.9
1,281,250	+		TX73_006015	0.66	-2.8
1,281,250	+		TX73_006015	0.66	+0.6
1,281,257	+		TX73_006015	0.67	-0.0
1,281,258	-		TX73_006015	0.67	+0.5
1,281,281	+		TX73_006015	0.71	-0.3
1,281,283	+		TX73_006015	0.71	+0.1
1,281,288	+		TX73_006015	0.72	-0.4
1,281,288	+		TX73_006015	0.72	-0.0
1,281,289	-		TX73_006015	0.72	+0.0
1,281,296	+		TX73_006015	0.74	-1.0
1,281,296	-		TX73_006015	0.74	-0.4
1,281,313	-		TX73_006015	0.76	+0.8
1,281,313	-		TX73_006015	0.76	-1.0
1,281,333	+		TX73_006015	0.79	-0.9
1,281,333	+		TX73_006015	0.79	-1.7
1,281,333	+		TX73_006015	0.79	-1.6
1,281,421	-				-0.3
1,281,448	-				-0.8
1,281,453	-				-1.9
1,281,454	+				+0.0
1,281,454	+				-1.7
1,281,462	-				+0.2
1,281,480	+				+0.4
1,281,513	+				-0.3
1,281,513	+				-1.2
1,281,521	-				-1.5
1,281,521	-				-2.0