Experiment: MDC_bicarb with butyrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_002810 and TX73_002815 are separated by 194 nucleotides TX73_002815 and TX73_002820 are separated by 153 nucleotides TX73_002820 and TX73_002825 overlap by 4 nucleotides TX73_002825 and TX73_002830 are separated by 94 nucleotides
TX73_002810: TX73_002810 - AbrB family transcriptional regulator, at 605,406 to 606,458
_002810
TX73_002815: TX73_002815 - hypothetical protein, at 606,653 to 607,180
_002815
TX73_002820: TX73_002820 - CidA/LrgA family protein, at 607,334 to 607,717
_002820
TX73_002825: TX73_002825 - LrgB family protein, at 607,714 to 608,436
_002825
TX73_002830: TX73_002830 - hypothetical protein, at 608,531 to 608,995
_002830
Position (kb) 607
608 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 606.352 kb on + strand, within TX73_002810 at 606.352 kb on + strand, within TX73_002810 at 606.369 kb on + strand at 606.372 kb on + strand at 606.374 kb on + strand at 606.377 kb on + strand at 606.390 kb on - strand at 606.420 kb on - strand at 606.429 kb on - strand at 606.431 kb on + strand at 606.439 kb on + strand at 606.439 kb on + strand at 606.439 kb on + strand at 606.439 kb on + strand at 606.439 kb on + strand at 606.439 kb on + strand at 606.439 kb on + strand at 606.439 kb on + strand at 606.439 kb on - strand at 606.447 kb on - strand at 606.447 kb on - strand at 606.447 kb on - strand at 606.447 kb on - strand at 606.447 kb on - strand at 606.447 kb on - strand at 606.482 kb on - strand at 606.555 kb on + strand at 606.615 kb on + strand at 606.615 kb on + strand at 606.618 kb on + strand at 606.628 kb on + strand at 606.636 kb on + strand at 606.644 kb on - strand at 606.649 kb on + strand at 606.657 kb on - strand at 606.668 kb on + strand at 606.675 kb on - strand at 606.691 kb on + strand at 606.706 kb on + strand, within TX73_002815 at 606.736 kb on + strand, within TX73_002815 at 606.736 kb on + strand, within TX73_002815 at 606.751 kb on + strand, within TX73_002815 at 606.762 kb on - strand, within TX73_002815 at 606.805 kb on + strand, within TX73_002815 at 606.805 kb on + strand, within TX73_002815 at 606.842 kb on + strand, within TX73_002815 at 606.856 kb on + strand, within TX73_002815 at 606.900 kb on - strand, within TX73_002815 at 606.900 kb on - strand, within TX73_002815 at 606.919 kb on - strand, within TX73_002815 at 606.930 kb on - strand, within TX73_002815 at 606.944 kb on + strand, within TX73_002815 at 606.944 kb on + strand, within TX73_002815 at 606.980 kb on - strand, within TX73_002815 at 606.981 kb on + strand, within TX73_002815 at 606.996 kb on + strand, within TX73_002815 at 607.004 kb on - strand, within TX73_002815 at 607.008 kb on + strand, within TX73_002815 at 607.008 kb on + strand, within TX73_002815 at 607.012 kb on - strand, within TX73_002815 at 607.014 kb on - strand, within TX73_002815 at 607.016 kb on - strand, within TX73_002815 at 607.057 kb on - strand, within TX73_002815 at 607.061 kb on + strand, within TX73_002815 at 607.081 kb on + strand, within TX73_002815 at 607.081 kb on + strand, within TX73_002815 at 607.084 kb on - strand, within TX73_002815 at 607.135 kb on - strand at 607.146 kb on + strand at 607.152 kb on - strand at 607.187 kb on - strand at 607.214 kb on + strand at 607.248 kb on - strand at 607.263 kb on - strand at 607.293 kb on + strand at 607.363 kb on + strand at 607.371 kb on - strand at 607.421 kb on + strand, within TX73_002820 at 607.421 kb on + strand, within TX73_002820 at 607.429 kb on - strand, within TX73_002820 at 607.476 kb on - strand, within TX73_002820 at 607.490 kb on - strand, within TX73_002820 at 607.519 kb on + strand, within TX73_002820 at 607.527 kb on - strand, within TX73_002820 at 607.527 kb on - strand, within TX73_002820 at 607.574 kb on - strand, within TX73_002820 at 607.580 kb on - strand, within TX73_002820 at 607.608 kb on + strand, within TX73_002820 at 607.616 kb on - strand, within TX73_002820 at 607.635 kb on + strand, within TX73_002820 at 607.635 kb on + strand, within TX73_002820 at 607.664 kb on + strand, within TX73_002820 at 607.665 kb on - strand, within TX73_002820 at 607.665 kb on - strand, within TX73_002820 at 607.678 kb on - strand, within TX73_002820 at 607.702 kb on + strand at 607.739 kb on + strand at 607.739 kb on + strand at 607.739 kb on + strand at 607.740 kb on + strand at 607.741 kb on - strand at 607.747 kb on - strand at 607.757 kb on - strand at 607.772 kb on - strand at 607.781 kb on - strand at 607.783 kb on + strand at 607.783 kb on + strand at 607.783 kb on - strand at 607.788 kb on + strand, within TX73_002825 at 607.788 kb on + strand, within TX73_002825 at 607.847 kb on - strand, within TX73_002825 at 607.866 kb on + strand, within TX73_002825 at 607.874 kb on - strand, within TX73_002825 at 607.895 kb on + strand, within TX73_002825 at 607.906 kb on - strand, within TX73_002825 at 607.939 kb on + strand, within TX73_002825 at 607.953 kb on + strand, within TX73_002825 at 607.994 kb on + strand, within TX73_002825 at 608.002 kb on - strand, within TX73_002825 at 608.053 kb on - strand, within TX73_002825 at 608.068 kb on - strand, within TX73_002825 at 608.072 kb on + strand, within TX73_002825 at 608.075 kb on - strand, within TX73_002825 at 608.075 kb on - strand, within TX73_002825 at 608.076 kb on + strand, within TX73_002825 at 608.080 kb on - strand, within TX73_002825 at 608.094 kb on + strand, within TX73_002825 at 608.094 kb on + strand, within TX73_002825 at 608.102 kb on - strand, within TX73_002825 at 608.102 kb on - strand, within TX73_002825 at 608.102 kb on - strand, within TX73_002825 at 608.102 kb on - strand, within TX73_002825 at 608.179 kb on - strand, within TX73_002825 at 608.198 kb on + strand, within TX73_002825 at 608.206 kb on - strand, within TX73_002825 at 608.227 kb on + strand, within TX73_002825 at 608.335 kb on + strand, within TX73_002825 at 608.342 kb on - strand, within TX73_002825 at 608.343 kb on - strand, within TX73_002825 at 608.371 kb on - strand at 608.383 kb on - strand at 608.383 kb on - strand at 608.388 kb on + strand at 608.390 kb on + strand at 608.390 kb on + strand at 608.391 kb on - strand at 608.393 kb on + strand at 608.396 kb on + strand at 608.428 kb on - strand at 608.464 kb on - strand at 608.475 kb on + strand at 608.501 kb on - strand at 608.541 kb on + strand at 608.541 kb on + strand at 608.541 kb on + strand at 608.541 kb on + strand at 608.541 kb on + strand at 608.549 kb on - strand at 608.549 kb on - strand at 608.549 kb on - strand at 608.576 kb on + strand at 608.581 kb on + strand, within TX73_002830 at 608.589 kb on - strand, within TX73_002830 at 608.589 kb on - strand, within TX73_002830 at 608.594 kb on - strand, within TX73_002830 at 608.634 kb on - strand, within TX73_002830 at 608.648 kb on - strand, within TX73_002830 at 608.689 kb on - strand, within TX73_002830
Per-strain Table
Position Strand Gene LocusTag Fraction MDC_bicarb with butyrate remove 606,352 + TX73_002810 0.90 -0.0 606,352 + TX73_002810 0.90 +0.2 606,369 + -2.0 606,372 + -1.4 606,374 + +0.2 606,377 + -1.3 606,390 - -0.4 606,420 - -0.8 606,429 - +1.1 606,431 + -0.5 606,439 + +0.7 606,439 + -1.0 606,439 + -0.4 606,439 + +0.6 606,439 + +0.9 606,439 + -0.5 606,439 + +0.1 606,439 + -0.2 606,439 - +0.2 606,447 - +0.4 606,447 - +0.4 606,447 - +0.6 606,447 - -1.4 606,447 - +0.3 606,447 - +0.9 606,482 - -0.0 606,555 + -3.8 606,615 + -0.4 606,615 + +0.6 606,618 + -1.0 606,628 + -0.4 606,636 + -2.1 606,644 - -0.1 606,649 + +0.7 606,657 - +1.4 606,668 + -0.1 606,675 - +0.3 606,691 + -1.3 606,706 + TX73_002815 0.10 -0.7 606,736 + TX73_002815 0.16 +0.5 606,736 + TX73_002815 0.16 +0.6 606,751 + TX73_002815 0.19 -0.0 606,762 - TX73_002815 0.21 +0.2 606,805 + TX73_002815 0.29 -0.8 606,805 + TX73_002815 0.29 -0.2 606,842 + TX73_002815 0.36 +0.1 606,856 + TX73_002815 0.38 +0.1 606,900 - TX73_002815 0.47 +0.1 606,900 - TX73_002815 0.47 +0.1 606,919 - TX73_002815 0.50 -1.7 606,930 - TX73_002815 0.52 +0.0 606,944 + TX73_002815 0.55 +0.8 606,944 + TX73_002815 0.55 +0.9 606,980 - TX73_002815 0.62 -0.4 606,981 + TX73_002815 0.62 +0.6 606,996 + TX73_002815 0.65 -0.4 607,004 - TX73_002815 0.66 -0.0 607,008 + TX73_002815 0.67 -0.1 607,008 + TX73_002815 0.67 -0.5 607,012 - TX73_002815 0.68 +0.6 607,014 - TX73_002815 0.68 -3.0 607,016 - TX73_002815 0.69 -0.9 607,057 - TX73_002815 0.77 -0.5 607,061 + TX73_002815 0.77 +0.7 607,081 + TX73_002815 0.81 -0.8 607,081 + TX73_002815 0.81 -0.0 607,084 - TX73_002815 0.82 -1.4 607,135 - -0.6 607,146 + +0.7 607,152 - +0.3 607,187 - +0.3 607,214 + +0.2 607,248 - -0.3 607,263 - -0.5 607,293 + -0.5 607,363 + -2.5 607,371 - -0.2 607,421 + TX73_002820 0.23 -0.7 607,421 + TX73_002820 0.23 -0.4 607,429 - TX73_002820 0.25 -0.6 607,476 - TX73_002820 0.37 +0.1 607,490 - TX73_002820 0.41 +0.3 607,519 + TX73_002820 0.48 -0.8 607,527 - TX73_002820 0.50 +0.6 607,527 - TX73_002820 0.50 -0.1 607,574 - TX73_002820 0.62 -1.0 607,580 - TX73_002820 0.64 -0.8 607,608 + TX73_002820 0.71 -1.3 607,616 - TX73_002820 0.73 -0.5 607,635 + TX73_002820 0.78 -0.5 607,635 + TX73_002820 0.78 -0.7 607,664 + TX73_002820 0.86 -0.7 607,665 - TX73_002820 0.86 -0.7 607,665 - TX73_002820 0.86 +0.1 607,678 - TX73_002820 0.90 +0.0 607,702 + -0.3 607,739 + -0.3 607,739 + +0.2 607,739 + +0.4 607,740 + -0.9 607,741 - -0.9 607,747 - +0.0 607,757 - -0.9 607,772 - +0.2 607,781 - +1.2 607,783 + -0.0 607,783 + -0.0 607,783 - +1.2 607,788 + TX73_002825 0.10 +0.4 607,788 + TX73_002825 0.10 -0.1 607,847 - TX73_002825 0.18 -0.5 607,866 + TX73_002825 0.21 -1.0 607,874 - TX73_002825 0.22 +0.7 607,895 + TX73_002825 0.25 -1.4 607,906 - TX73_002825 0.27 -1.2 607,939 + TX73_002825 0.31 +0.4 607,953 + TX73_002825 0.33 +0.1 607,994 + TX73_002825 0.39 +0.0 608,002 - TX73_002825 0.40 -2.5 608,053 - TX73_002825 0.47 +0.2 608,068 - TX73_002825 0.49 +0.6 608,072 + TX73_002825 0.50 -0.7 608,075 - TX73_002825 0.50 -0.8 608,075 - TX73_002825 0.50 +0.6 608,076 + TX73_002825 0.50 -0.6 608,080 - TX73_002825 0.51 -2.7 608,094 + TX73_002825 0.53 +1.6 608,094 + TX73_002825 0.53 -0.2 608,102 - TX73_002825 0.54 +1.2 608,102 - TX73_002825 0.54 +0.3 608,102 - TX73_002825 0.54 -0.4 608,102 - TX73_002825 0.54 -0.5 608,179 - TX73_002825 0.64 +0.2 608,198 + TX73_002825 0.67 -1.2 608,206 - TX73_002825 0.68 -0.5 608,227 + TX73_002825 0.71 -0.2 608,335 + TX73_002825 0.86 -2.0 608,342 - TX73_002825 0.87 -1.7 608,343 - TX73_002825 0.87 -0.8 608,371 - -0.1 608,383 - -0.1 608,383 - -0.1 608,388 + +0.0 608,390 + -0.7 608,390 + -2.4 608,391 - -1.7 608,393 + +0.5 608,396 + -0.9 608,428 - -0.2 608,464 - +0.4 608,475 + +0.3 608,501 - +0.1 608,541 + -0.1 608,541 + -0.1 608,541 + +0.1 608,541 + -1.2 608,541 + +0.1 608,549 - -0.8 608,549 - +0.9 608,549 - -0.5 608,576 + -0.2 608,581 + TX73_002830 0.11 -1.1 608,589 - TX73_002830 0.12 +0.1 608,589 - TX73_002830 0.12 +0.0 608,594 - TX73_002830 0.14 -0.5 608,634 - TX73_002830 0.22 -1.1 608,648 - TX73_002830 0.25 +0.5 608,689 - TX73_002830 0.34 +0.0
Or see this region's nucleotide sequence