Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_013335

Experiment: MDC_bicarb with butyrate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MDC_bicarb with butyrate
2,930,744	+		TX73_013330	0.35	-0.2
2,930,754	+		TX73_013330	0.36	+0.9
2,930,754	+		TX73_013330	0.36	+0.3
2,930,798	-		TX73_013330	0.39	-0.2
2,930,838	+		TX73_013330	0.42	-0.2
2,930,846	-		TX73_013330	0.42	+0.3
2,930,887	+		TX73_013330	0.45	-0.7
2,930,892	+		TX73_013330	0.45	+0.6
2,930,905	-		TX73_013330	0.46	+0.7
2,930,920	-		TX73_013330	0.47	+0.5
2,930,925	+		TX73_013330	0.48	-0.7
2,930,925	+		TX73_013330	0.48	-0.2
2,930,925	-		TX73_013330	0.48	-0.2
2,930,925	-		TX73_013330	0.48	-0.7
2,930,927	+		TX73_013330	0.48	-0.4
2,930,930	-		TX73_013330	0.48	+0.6
2,930,933	-		TX73_013330	0.48	+0.1
2,930,943	-		TX73_013330	0.49	-0.0
2,930,948	-		TX73_013330	0.49	-1.2
2,930,971	-		TX73_013330	0.51	-1.1
2,930,999	+		TX73_013330	0.53	+0.8
2,931,006	-		TX73_013330	0.53	-0.2
2,931,144	-		TX73_013330	0.63	+0.6
2,931,145	+		TX73_013330	0.63	-0.1
2,931,145	+		TX73_013330	0.63	+0.2
2,931,153	-		TX73_013330	0.63	+0.5
2,931,177	+		TX73_013330	0.65	+0.6
2,931,177	-		TX73_013330	0.65	+0.1
2,931,177	-		TX73_013330	0.65	+0.6
2,931,199	+		TX73_013330	0.66	+0.9
2,931,207	-		TX73_013330	0.67	-2.0
2,931,254	+		TX73_013330	0.70	-0.2
2,931,254	+		TX73_013330	0.70	+1.3
2,931,255	+		TX73_013330	0.70	-1.0
2,931,262	-		TX73_013330	0.71	+0.1
2,931,263	-		TX73_013330	0.71	-0.1
2,931,303	+		TX73_013330	0.73	-0.9
2,931,305	+		TX73_013330	0.74	+1.1
2,931,311	-		TX73_013330	0.74	+0.2
2,931,313	-		TX73_013330	0.74	-1.2
2,931,313	-		TX73_013330	0.74	+0.1
2,931,319	-		TX73_013330	0.74	-0.3
2,931,358	-		TX73_013330	0.77	+0.2
2,931,358	-		TX73_013330	0.77	+1.3
2,931,489	+		TX73_013330	0.86	-0.5
2,931,489	+		TX73_013330	0.86	+0.4
2,931,489	+		TX73_013330	0.86	+0.1
2,931,497	-		TX73_013330	0.87	-0.9
2,931,574	+				-1.9
2,931,582	-				+0.6
2,931,582	-				+1.0
2,931,587	-				-0.8
2,931,648	+				+0.4
2,931,662	+				-0.4
2,931,670	-				-0.3
2,931,704	-				+0.0
2,931,710	+				-0.0
2,931,715	+				+0.3
2,931,720	-				-0.0
2,931,722	+				+1.4
2,931,722	+				+0.8
2,931,722	+				-0.0
2,931,722	+				-0.8
2,931,722	+				+0.4
2,931,722	+				-1.2
2,931,722	+				-0.9
2,931,730	-				-0.1
2,931,730	-				-0.9
2,931,730	-				+0.4
2,931,730	-				-0.9
2,931,730	-				-0.2
2,931,730	-				+0.6
2,931,733	-				-1.8
2,931,752	-				+0.5
2,931,832	+		TX73_013335	0.12	+0.0
2,931,844	-		TX73_013335	0.13	+0.0
2,931,895	-		TX73_013335	0.18	+0.6
2,931,960	+		TX73_013335	0.23	-0.1
2,932,005	+		TX73_013335	0.27	+0.7
2,932,016	+		TX73_013335	0.28	-0.1
2,932,016	+		TX73_013335	0.28	-0.8
2,932,016	+		TX73_013335	0.28	-0.3
2,932,016	+		TX73_013335	0.28	-1.1
2,932,024	-		TX73_013335	0.29	+0.1
2,932,031	+		TX73_013335	0.30	+0.1
2,932,071	+		TX73_013335	0.33	+1.2
2,932,090	-		TX73_013335	0.35	-1.5
2,932,096	-		TX73_013335	0.35	-0.1
2,932,199	-		TX73_013335	0.44	+0.1
2,932,301	+		TX73_013335	0.53	-0.0
2,932,304	-		TX73_013335	0.54	+0.8
2,932,322	-		TX73_013335	0.55	-0.4
2,932,333	-		TX73_013335	0.56	-0.1
2,932,340	+		TX73_013335	0.57	-1.0
2,932,345	+		TX73_013335	0.57	+0.2
2,932,353	-		TX73_013335	0.58	-1.6
2,932,390	+		TX73_013335	0.61	-0.2
2,932,438	+		TX73_013335	0.65	+0.1
2,932,446	+		TX73_013335	0.66	+0.0
2,932,454	-		TX73_013335	0.67	+0.3
2,932,469	+		TX73_013335	0.68	+0.4
2,932,491	-		TX73_013335	0.70	+0.3
2,932,495	+		TX73_013335	0.70	+0.4
2,932,509	-		TX73_013335	0.72	-0.7
2,932,515	+		TX73_013335	0.72	-1.3
2,932,559	-		TX73_013335	0.76	+0.7
2,932,559	-		TX73_013335	0.76	-0.6
2,932,618	-		TX73_013335	0.81	-2.1
2,932,672	+		TX73_013335	0.86	+1.2
2,932,672	+		TX73_013335	0.86	-0.6
2,932,680	-		TX73_013335	0.87	-0.3
2,932,685	+		TX73_013335	0.87	-1.2
2,932,685	+		TX73_013335	0.87	-0.0
2,932,685	+		TX73_013335	0.87	+0.0
2,932,693	-		TX73_013335	0.88	-0.4
2,932,693	-		TX73_013335	0.88	-0.5
2,932,693	-		TX73_013335	0.88	-0.5
2,932,693	-		TX73_013335	0.88	+0.3
2,932,698	-		TX73_013335	0.88	-0.6
2,932,760	+				-0.5
2,932,765	+				-0.5
2,932,810	+				+0.0
2,932,815	-				-0.4
2,932,830	+				-0.3
2,932,854	-				+0.5
2,932,861	-				+0.2
2,932,880	+		TX73_013340	0.17	+0.5
2,932,880	-		TX73_013340	0.17	+0.1
2,932,888	-		TX73_013340	0.21	+0.5
2,932,888	-		TX73_013340	0.21	-0.1
2,932,893	-		TX73_013340	0.24	-0.2
2,932,953	+		TX73_013340	0.58	+0.1
2,932,953	+		TX73_013340	0.58	-0.6
2,932,961	-		TX73_013340	0.63	-1.4
2,932,961	-		TX73_013340	0.63	-0.9
2,933,009	+				-0.5
2,933,011	+				-0.3
2,933,033	+				-0.5
2,933,036	+				-0.3
2,933,057	+				-0.1
2,933,073	-				+0.4
2,933,173	+				-0.1
2,933,176	-				+0.0
2,933,197	-				-0.1
2,933,197	-				-0.1
2,933,200	+				+0.6
2,933,201	+				+0.1
2,933,219	-				+0.4
2,933,223	+				-1.5
2,933,234	-				-0.2
2,933,245	-				+0.2
2,933,267	-		TX73_013345	0.14	+0.4
2,933,269	+		TX73_013345	0.15	-1.5
2,933,273	+		TX73_013345	0.16	-0.1
2,933,277	-		TX73_013345	0.17	+0.7
2,933,288	+		TX73_013345	0.19	-0.4
2,933,314	-		TX73_013345	0.26	-1.2
2,933,323	-		TX73_013345	0.28	+0.2
2,933,334	+		TX73_013345	0.31	-0.3
2,933,334	+		TX73_013345	0.31	-0.6
2,933,365	-		TX73_013345	0.39	-0.6
2,933,369	+		TX73_013345	0.40	+0.6
2,933,389	+		TX73_013345	0.45	-0.3
2,933,389	+		TX73_013345	0.45	-0.1
2,933,397	-		TX73_013345	0.47	-0.0
2,933,397	-		TX73_013345	0.47	-0.0
2,933,407	-		TX73_013345	0.50	+0.0
2,933,441	-		TX73_013345	0.59	-0.7
2,933,442	-		TX73_013345	0.59	+0.2
2,933,449	-		TX73_013345	0.61	-0.1
2,933,454	-		TX73_013345	0.62	-1.2
2,933,456	+		TX73_013345	0.63	+0.3
2,933,474	+		TX73_013345	0.67	-2.3
2,933,474	+		TX73_013345	0.67	+0.7
2,933,474	+		TX73_013345	0.67	-1.0
2,933,477	-		TX73_013345	0.68	-0.6
2,933,495	+		TX73_013345	0.73	-0.2
2,933,495	-		TX73_013345	0.73	-0.3
2,933,500	-		TX73_013345	0.74	+0.1
2,933,512	+		TX73_013345	0.77	+0.1
2,933,512	+		TX73_013345	0.77	-0.1
2,933,524	+		TX73_013345	0.80	+0.8
2,933,546	+		TX73_013345	0.86	-0.6
2,933,551	-		TX73_013345	0.87	+0.5
2,933,558	-		TX73_013345	0.89	-0.8
2,933,558	-		TX73_013345	0.89	+0.8
2,933,591	+				-0.9
2,933,607	+				+0.2
2,933,618	-				+0.8
2,933,620	-				-0.5
2,933,636	+				-1.4
2,933,664	-				-0.4
2,933,672	-				+0.6
2,933,672	-				-0.1
2,933,682	-				-0.2
2,933,689	+				-1.3
2,933,711	+				-0.2
2,933,714	+				+0.4
2,933,719	-				+1.0
2,933,720	-				-0.2
2,933,724	+				+0.4
2,933,736	+				-0.2
2,933,762	+				+0.5
2,933,770	-				-0.6