Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_013100

Experiment: MDC_bicarb with butyrate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MDC_bicarb with butyrate
2,874,272	-				-1.8
2,874,314	+		TX73_013095	0.13	+0.5
2,874,321	+		TX73_013095	0.13	-2.0
2,874,332	+		TX73_013095	0.14	-2.9
2,874,345	-		TX73_013095	0.15	-1.1
2,874,353	+		TX73_013095	0.16	-1.9
2,874,404	+		TX73_013095	0.21	-0.6
2,874,426	+		TX73_013095	0.23	-0.3
2,874,449	+		TX73_013095	0.25	-1.8
2,874,449	+		TX73_013095	0.25	+0.1
2,874,451	+		TX73_013095	0.25	+1.3
2,874,454	+		TX73_013095	0.25	-1.7
2,874,454	+		TX73_013095	0.25	+0.7
2,874,457	-		TX73_013095	0.25	-1.7
2,874,457	-		TX73_013095	0.25	-1.3
2,874,457	-		TX73_013095	0.25	-0.6
2,874,457	-		TX73_013095	0.25	-0.3
2,874,457	-		TX73_013095	0.25	-2.7
2,874,457	-		TX73_013095	0.25	+0.9
2,874,462	-		TX73_013095	0.26	+0.1
2,874,462	-		TX73_013095	0.26	-1.2
2,874,462	-		TX73_013095	0.26	-1.8
2,874,467	-		TX73_013095	0.26	-2.2
2,874,467	-		TX73_013095	0.26	+0.5
2,874,482	+		TX73_013095	0.28	-2.3
2,874,495	+		TX73_013095	0.29	+1.3
2,874,495	+		TX73_013095	0.29	-1.3
2,874,503	-		TX73_013095	0.29	-1.4
2,874,517	+		TX73_013095	0.31	-2.7
2,874,528	+		TX73_013095	0.32	-0.1
2,874,533	+		TX73_013095	0.32	+0.1
2,874,536	-		TX73_013095	0.32	+0.3
2,874,536	-		TX73_013095	0.32	-0.5
2,874,542	-		TX73_013095	0.33	+0.3
2,874,583	+		TX73_013095	0.37	-2.2
2,874,596	-		TX73_013095	0.38	-1.6
2,874,606	+		TX73_013095	0.39	+0.1
2,874,611	+		TX73_013095	0.39	-2.7
2,874,614	-		TX73_013095	0.39	-0.8
2,874,614	-		TX73_013095	0.39	-2.3
2,874,616	+		TX73_013095	0.40	-0.5
2,874,616	+		TX73_013095	0.40	-1.3
2,874,624	-		TX73_013095	0.40	-0.5
2,874,625	-		TX73_013095	0.40	-0.9
2,874,639	+		TX73_013095	0.42	-0.5
2,874,652	-		TX73_013095	0.43	-1.5
2,874,663	-		TX73_013095	0.44	-0.1
2,874,669	-		TX73_013095	0.44	-0.8
2,874,674	-		TX73_013095	0.45	-0.5
2,874,735	-		TX73_013095	0.50	-1.9
2,874,764	-		TX73_013095	0.53	+1.1
2,874,781	+		TX73_013095	0.54	-1.6
2,874,787	+		TX73_013095	0.55	-0.4
2,874,789	-		TX73_013095	0.55	-0.9
2,874,789	-		TX73_013095	0.55	+1.0
2,874,796	-		TX73_013095	0.56	-0.3
2,874,796	-		TX73_013095	0.56	-0.6
2,874,822	+		TX73_013095	0.58	-2.1
2,874,830	-		TX73_013095	0.59	-0.2
2,874,908	+		TX73_013095	0.66	-1.5
2,874,908	+		TX73_013095	0.66	-0.1
2,874,918	+		TX73_013095	0.67	-2.1
2,874,926	-		TX73_013095	0.67	-1.3
2,874,928	+		TX73_013095	0.67	-1.9
2,874,936	-		TX73_013095	0.68	-1.4
2,874,974	+		TX73_013095	0.72	-1.3
2,874,974	+		TX73_013095	0.72	-2.0
2,874,974	+		TX73_013095	0.72	-2.2
2,874,979	+		TX73_013095	0.72	-1.7
2,874,982	-		TX73_013095	0.72	-0.5
2,874,982	-		TX73_013095	0.72	-1.9
2,874,982	-		TX73_013095	0.72	-1.7
2,874,991	-		TX73_013095	0.73	-2.1
2,875,002	-		TX73_013095	0.74	-0.5
2,875,030	+		TX73_013095	0.77	+0.1
2,875,036	-		TX73_013095	0.77	-1.7
2,875,038	-		TX73_013095	0.77	-0.6
2,875,048	+		TX73_013095	0.78	-1.6
2,875,061	+		TX73_013095	0.79	-0.0
2,875,061	+		TX73_013095	0.79	-1.1
2,875,063	+		TX73_013095	0.80	-2.9
2,875,063	+		TX73_013095	0.80	+0.4
2,875,076	+		TX73_013095	0.81	-1.0
2,875,099	-		TX73_013095	0.83	-1.3
2,875,113	-		TX73_013095	0.84	-0.5
2,875,159	-		TX73_013095	0.88	-0.7
2,875,163	+		TX73_013095	0.88	-1.7
2,875,168	+		TX73_013095	0.89	+1.3
2,875,171	-		TX73_013095	0.89	-2.5
2,875,212	-				-0.0
2,875,245	-				-0.1
2,875,293	-				+0.4
2,875,333	+				-0.4
2,875,333	+				+0.2
2,875,350	-				-0.5
2,875,351	+				+0.2
2,875,360	-		TX73_013100	0.11	-1.1
2,875,385	+		TX73_013100	0.13	-0.1
2,875,385	+		TX73_013100	0.13	+0.4
2,875,419	-		TX73_013100	0.15	+0.2
2,875,456	+		TX73_013100	0.18	+0.9
2,875,464	-		TX73_013100	0.19	-0.1
2,875,494	-		TX73_013100	0.21	+0.1
2,875,513	+		TX73_013100	0.23	-0.1
2,875,516	+		TX73_013100	0.23	+0.9
2,875,532	+		TX73_013100	0.24	-2.8
2,875,540	-		TX73_013100	0.25	+0.1
2,875,540	-		TX73_013100	0.25	-0.0
2,875,542	+		TX73_013100	0.25	-0.4
2,875,565	-		TX73_013100	0.27	-0.7
2,875,575	+		TX73_013100	0.27	-0.4
2,875,575	+		TX73_013100	0.27	-1.1
2,875,590	+		TX73_013100	0.29	+0.1
2,875,598	-		TX73_013100	0.29	-0.1
2,875,598	-		TX73_013100	0.29	+0.4
2,875,598	-		TX73_013100	0.29	-0.2
2,875,598	-		TX73_013100	0.29	+0.5
2,875,599	-		TX73_013100	0.29	+0.1
2,875,601	+		TX73_013100	0.29	-0.5
2,875,666	-		TX73_013100	0.35	-0.0
2,875,671	-		TX73_013100	0.35	-0.0
2,875,691	+		TX73_013100	0.37	-0.7
2,875,692	+		TX73_013100	0.37	-0.1
2,875,700	-		TX73_013100	0.37	+0.4
2,875,702	+		TX73_013100	0.37	+0.9
2,875,765	-		TX73_013100	0.42	-1.1
2,875,790	-		TX73_013100	0.44	+0.5
2,875,792	+		TX73_013100	0.44	+0.5
2,875,792	+		TX73_013100	0.44	-0.3
2,875,802	+		TX73_013100	0.45	-0.1
2,875,803	-		TX73_013100	0.45	-0.8
2,875,855	-		TX73_013100	0.49	+0.6
2,875,940	+		TX73_013100	0.56	-0.4
2,875,981	-		TX73_013100	0.59	-0.1
2,875,996	+		TX73_013100	0.60	+0.5
2,876,001	+		TX73_013100	0.61	-0.1
2,876,018	+		TX73_013100	0.62	+0.5
2,876,026	-		TX73_013100	0.63	-0.7
2,876,037	+		TX73_013100	0.64	-1.9
2,876,042	+		TX73_013100	0.64	-0.0
2,876,050	-		TX73_013100	0.65	-0.2
2,876,050	-		TX73_013100	0.65	+0.1
2,876,050	-		TX73_013100	0.65	-0.0
2,876,173	-		TX73_013100	0.74	-1.3
2,876,212	-		TX73_013100	0.77	-1.2
2,876,228	+		TX73_013100	0.79	-1.0
2,876,236	-		TX73_013100	0.79	+1.4
2,876,236	-		TX73_013100	0.79	-0.4
2,876,236	-		TX73_013100	0.79	-0.3
2,876,236	-		TX73_013100	0.79	-0.5
2,876,236	-		TX73_013100	0.79	-0.7
2,876,264	-		TX73_013100	0.81	-0.6
2,876,294	+		TX73_013100	0.84	+0.8
2,876,302	-		TX73_013100	0.84	-0.2
2,876,317	+		TX73_013100	0.86	-0.9
2,876,386	+				-0.1
2,876,394	-				-0.3
2,876,409	+				+0.5
2,876,412	-				+0.1
2,876,417	-				-0.2
2,876,438	+				+0.1
2,876,446	-				-0.5
2,876,451	-				+0.5
2,876,451	-				-1.2
2,876,538	+				-0.9
2,876,576	-				-1.4
2,876,645	+		TX73_013105	0.23	-0.6
2,876,645	+		TX73_013105	0.23	-0.3
2,876,653	-		TX73_013105	0.30	+0.7
2,876,655	+		TX73_013105	0.31	-1.0
2,876,655	+		TX73_013105	0.31	+0.1
2,876,668	+		TX73_013105	0.41	-0.0
2,876,673	+		TX73_013105	0.45	-1.4
2,876,712	+		TX73_013105	0.74	-0.3
2,876,720	-		TX73_013105	0.80	+0.3
2,876,728	-		TX73_013105	0.86	+1.4
2,876,764	-				-1.1
2,876,783	+		TX73_013110	0.13	-0.3
2,876,793	+		TX73_013110	0.17	+0.1
2,876,801	-		TX73_013110	0.19	+0.3
2,876,859	+		TX73_013110	0.38	-1.2
2,876,861	-		TX73_013110	0.39	-0.7
2,876,866	-		TX73_013110	0.41	-0.7
2,876,890	+		TX73_013110	0.48	-1.4
2,876,927	+		TX73_013110	0.60	-0.2
2,876,935	-		TX73_013110	0.63	-0.3
2,876,935	-		TX73_013110	0.63	-0.6
2,876,935	-		TX73_013110	0.63	-0.0
2,876,935	-		TX73_013110	0.63	-0.2
2,876,968	+		TX73_013110	0.74	-0.4
2,876,968	+		TX73_013110	0.74	-0.3
2,876,997	+		TX73_013110	0.83	-0.9
2,877,027	+				-1.3
2,877,028	-				-1.0
2,877,041	+				-0.1
2,877,054	-				+0.3
2,877,071	+				-0.4
2,877,097	-				-1.0
2,877,104	+				-2.6
2,877,104	+				+0.4
2,877,104	+				+0.3
2,877,109	+				-0.2
2,877,110	+				-0.4
2,877,112	-				-0.9
2,877,112	-				+0.3
2,877,112	-				-1.3
2,877,112	-				-0.3
2,877,142	-				-1.1
2,877,152	-				+0.4
2,877,160	+				+0.4
2,877,160	+				-0.4
2,877,160	+				-1.2
2,877,160	+				+1.0
2,877,168	-				-0.7
2,877,168	-				+0.7
2,877,168	-				-1.1
2,877,168	-				+0.9
2,877,180	+				+0.4
2,877,198	-				-0.2
2,877,200	+				-0.2
2,877,213	+				-0.2
2,877,213	+				+0.3
2,877,224	+				-1.2
2,877,224	+				+0.1
2,877,225	+				-0.1
2,877,232	-				+0.6
2,877,243	+				-1.2
2,877,248	+				+0.0
2,877,258	+				-0.1
2,877,266	-				-1.1
2,877,266	-				-0.3
2,877,380	+				+0.1
2,877,435	-		TX73_013115	0.12	+1.3
2,877,435	-		TX73_013115	0.12	+0.4
2,877,462	+		TX73_013115	0.13	-2.3