Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_018150

Experiment: MDC_bicarb with butyrate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MDC_bicarb with butyrate
3,954,804	-		TX73_018145	0.78	+0.1
3,954,819	+		TX73_018145	0.78	+0.5
3,954,819	+		TX73_018145	0.78	-0.7
3,954,819	-		TX73_018145	0.78	+0.1
3,954,827	-		TX73_018145	0.79	-0.0
3,954,828	+		TX73_018145	0.79	-1.8
3,954,828	+		TX73_018145	0.79	-0.6
3,954,836	-		TX73_018145	0.79	+0.8
3,954,842	-		TX73_018145	0.79	-0.2
3,954,851	-		TX73_018145	0.79	-0.3
3,954,871	+		TX73_018145	0.80	-0.1
3,954,921	-		TX73_018145	0.81	-0.6
3,954,955	-		TX73_018145	0.82	-0.8
3,954,970	-		TX73_018145	0.82	-0.6
3,954,972	+		TX73_018145	0.82	-0.2
3,954,980	-		TX73_018145	0.83	-0.6
3,954,981	+		TX73_018145	0.83	-0.7
3,954,982	-		TX73_018145	0.83	-1.1
3,955,009	-		TX73_018145	0.83	-0.1
3,955,014	-		TX73_018145	0.84	-0.2
3,955,018	+		TX73_018145	0.84	+0.1
3,955,026	-		TX73_018145	0.84	+0.7
3,955,026	-		TX73_018145	0.84	-0.1
3,955,049	+		TX73_018145	0.84	-0.0
3,955,049	+		TX73_018145	0.84	-1.8
3,955,057	-		TX73_018145	0.85	-0.2
3,955,083	+		TX73_018145	0.85	-0.6
3,955,091	-		TX73_018145	0.86	+1.3
3,955,091	-		TX73_018145	0.86	+0.0
3,955,091	-		TX73_018145	0.86	-0.5
3,955,091	-		TX73_018145	0.86	-0.3
3,955,136	-		TX73_018145	0.87	-1.4
3,955,150	+		TX73_018145	0.87	-0.3
3,955,174	+		TX73_018145	0.88	+0.0
3,955,182	-		TX73_018145	0.88	-0.9
3,955,182	-		TX73_018145	0.88	-0.5
3,955,182	-		TX73_018145	0.88	+0.1
3,955,210	-		TX73_018145	0.89	+0.6
3,955,242	-		TX73_018145	0.89	-0.1
3,955,249	-		TX73_018145	0.90	+0.1
3,955,255	+		TX73_018145	0.90	-0.6
3,955,255	+		TX73_018145	0.90	-0.0
3,955,263	-				+1.1
3,955,263	-				-0.2
3,955,289	+				-0.9
3,955,292	-				-2.3
3,955,303	+				-0.3
3,955,316	-				+1.3
3,955,328	+				+0.1
3,955,336	+				-1.5
3,955,336	+				+0.7
3,955,336	-				+0.5
3,955,406	+				-1.2
3,955,414	-				-0.0
3,955,419	-				-0.6
3,955,419	-				-0.7
3,955,430	+				+0.1
3,955,484	+				-0.3
3,955,497	+				+0.8
3,955,505	-				-0.9
3,955,505	-				-0.6
3,955,505	-				-0.8
3,955,505	-				+0.5
3,955,505	-				-0.0
3,955,533	+				-0.6
3,955,541	-				-0.3
3,955,553	-				-0.2
3,955,553	-				-0.2
3,955,570	+				-0.2
3,955,575	+				-0.4
3,955,575	+				+0.1
3,955,578	-				-0.9
3,955,578	-				-0.0
3,955,583	-				-0.2
3,955,583	-				-0.1
3,955,583	-				-1.0
3,955,605	-				+0.1
3,955,619	-				+0.4
3,955,625	+				-0.0
3,955,630	-				+0.2
3,955,646	+				-0.7
3,955,650	+				-0.9
3,955,650	+				+0.5
3,955,652	+				-0.2
3,955,653	-				-0.4
3,955,658	-				-0.6
3,955,717	+				+0.1
3,955,728	+				-0.9
3,955,758	-				-0.3
3,955,758	-				+0.0
3,955,768	-				+0.0
3,955,784	-				-0.2
3,955,895	-				-0.6
3,955,901	+				+0.3
3,955,909	-				+0.4
3,955,909	-				+0.0
3,955,961	-		TX73_018150	0.13	+0.2
3,955,967	+		TX73_018150	0.13	+0.1
3,955,986	+		TX73_018150	0.15	-0.3
3,955,988	+		TX73_018150	0.15	-0.9
3,955,988	+		TX73_018150	0.15	+0.4
3,955,996	-		TX73_018150	0.15	-0.2
3,956,015	+		TX73_018150	0.17	-0.0
3,956,023	-		TX73_018150	0.17	-0.3
3,956,023	-		TX73_018150	0.17	-0.3
3,956,053	+		TX73_018150	0.19	-0.6
3,956,086	-		TX73_018150	0.22	+0.7
3,956,094	+		TX73_018150	0.22	+0.5
3,956,097	-		TX73_018150	0.22	-0.3
3,956,149	-		TX73_018150	0.26	+0.1
3,956,151	-		TX73_018150	0.26	+0.2
3,956,166	-		TX73_018150	0.27	+0.3
3,956,180	-		TX73_018150	0.28	-0.7
3,956,193	+		TX73_018150	0.29	-0.8
3,956,202	+		TX73_018150	0.30	+0.2
3,956,210	-		TX73_018150	0.30	-0.4
3,956,229	+		TX73_018150	0.32	+0.2
3,956,245	-		TX73_018150	0.33	-0.2
3,956,315	+		TX73_018150	0.38	-0.3
3,956,316	+		TX73_018150	0.38	-1.4
3,956,351	-		TX73_018150	0.40	-1.0
3,956,374	+		TX73_018150	0.42	+0.3
3,956,374	+		TX73_018150	0.42	+0.1
3,956,379	+		TX73_018150	0.42	-0.2
3,956,379	+		TX73_018150	0.42	+0.7
3,956,382	-		TX73_018150	0.42	-0.3
3,956,387	-		TX73_018150	0.43	+0.2
3,956,387	-		TX73_018150	0.43	-1.1
3,956,394	+		TX73_018150	0.43	+0.2
3,956,394	+		TX73_018150	0.43	-0.1
3,956,394	+		TX73_018150	0.43	-0.8
3,956,394	+		TX73_018150	0.43	-0.1
3,956,402	-		TX73_018150	0.44	+0.7
3,956,412	-		TX73_018150	0.44	+0.1
3,956,424	+		TX73_018150	0.45	+0.3
3,956,426	-		TX73_018150	0.45	+0.6
3,956,432	-		TX73_018150	0.46	+0.5
3,956,432	-		TX73_018150	0.46	-1.5
3,956,434	+		TX73_018150	0.46	-0.2
3,956,462	-		TX73_018150	0.48	+0.0
3,956,464	+		TX73_018150	0.48	+0.1
3,956,504	-		TX73_018150	0.51	-0.7
3,956,536	+		TX73_018150	0.53	-0.3
3,956,536	+		TX73_018150	0.53	+0.2
3,956,544	-		TX73_018150	0.54	-0.1
3,956,544	-		TX73_018150	0.54	-0.2
3,956,544	-		TX73_018150	0.54	-0.4
3,956,548	+		TX73_018150	0.54	+0.4
3,956,548	+		TX73_018150	0.54	-0.2
3,956,556	-		TX73_018150	0.54	-0.4
3,956,556	-		TX73_018150	0.54	-1.3
3,956,556	-		TX73_018150	0.54	+0.1
3,956,556	-		TX73_018150	0.54	+0.3
3,956,591	-		TX73_018150	0.57	-0.0
3,956,593	-		TX73_018150	0.57	-0.0
3,956,655	+		TX73_018150	0.61	-0.5
3,956,669	+		TX73_018150	0.62	-0.5
3,956,675	+		TX73_018150	0.63	-0.3
3,956,675	-		TX73_018150	0.63	-0.4
3,956,676	+		TX73_018150	0.63	+0.2
3,956,680	+		TX73_018150	0.63	-0.6
3,956,680	+		TX73_018150	0.63	-0.3
3,956,688	-		TX73_018150	0.64	-0.1
3,956,710	+		TX73_018150	0.65	-0.6
3,956,732	+		TX73_018150	0.67	-0.1
3,956,766	-		TX73_018150	0.69	-0.6
3,956,768	+		TX73_018150	0.69	-0.2
3,956,788	+		TX73_018150	0.71	-0.2
3,956,796	-		TX73_018150	0.71	-0.1
3,956,796	-		TX73_018150	0.71	-0.5
3,956,796	-		TX73_018150	0.71	+0.2
3,956,813	-		TX73_018150	0.72	-0.3
3,956,839	+		TX73_018150	0.74	-0.2
3,956,847	-		TX73_018150	0.75	-0.2
3,956,857	-		TX73_018150	0.76	-0.3
3,956,857	-		TX73_018150	0.76	-0.3
3,956,857	-		TX73_018150	0.76	-0.2
3,956,896	+		TX73_018150	0.78	+0.2
3,956,909	-		TX73_018150	0.79	+0.2
3,956,968	+		TX73_018150	0.83	-0.6
3,956,974	-		TX73_018150	0.84	+0.3
3,956,981	-		TX73_018150	0.84	-0.3
3,956,983	-		TX73_018150	0.84	+0.5
3,956,983	-		TX73_018150	0.84	-0.4
3,956,985	+		TX73_018150	0.85	+0.1
3,956,990	+		TX73_018150	0.85	-0.2
3,956,998	-		TX73_018150	0.85	+0.4
3,956,998	-		TX73_018150	0.85	-0.1
3,957,011	-		TX73_018150	0.86	-0.5
3,957,028	-		TX73_018150	0.88	-0.6
3,957,030	-		TX73_018150	0.88	+0.1
3,957,031	+		TX73_018150	0.88	-0.5
3,957,071	+				-0.6
3,957,080	-				+0.7
3,957,085	+				+0.1
3,957,183	-				-0.1
3,957,202	-				-0.8
3,957,203	-				+0.1
3,957,235	-				-0.5
3,957,255	+				-0.4
3,957,255	+				+0.3
3,957,255	+				-1.2
3,957,255	+				-0.2
3,957,255	+				-0.9
3,957,255	+				-0.0
3,957,255	+				+0.4
3,957,255	+				+0.2
3,957,255	+				-0.3
3,957,263	-				-0.1
3,957,263	-				-0.4
3,957,263	-				-0.5
3,957,264	-				-0.7
3,957,284	+				+0.0
3,957,311	+				+0.4
3,957,314	-				+0.4
3,957,322	+				-0.4
3,957,343	+		TX73_018155	0.13	+0.3
3,957,351	-		TX73_018155	0.15	-1.3
3,957,376	+		TX73_018155	0.19	-0.0
3,957,384	-		TX73_018155	0.21	+0.3
3,957,386	+		TX73_018155	0.21	-0.7
3,957,424	+		TX73_018155	0.28	-0.2
3,957,424	+		TX73_018155	0.28	+0.3
3,957,424	+		TX73_018155	0.28	-0.4
3,957,424	+		TX73_018155	0.28	-0.3
3,957,432	-		TX73_018155	0.30	+0.6
3,957,432	-		TX73_018155	0.30	+0.7
3,957,432	-		TX73_018155	0.30	-0.5
3,957,433	-		TX73_018155	0.30	+0.5
3,957,500	-		TX73_018155	0.43	-0.4
3,957,502	-		TX73_018155	0.43	-0.0
3,957,516	+		TX73_018155	0.46	+0.4
3,957,534	-		TX73_018155	0.49	-0.5
3,957,556	+		TX73_018155	0.53	-0.6
3,957,577	+		TX73_018155	0.57	+0.1
3,957,577	+		TX73_018155	0.57	-0.1
3,957,596	-		TX73_018155	0.61	+0.8
3,957,616	-		TX73_018155	0.64	+0.4
3,957,705	+		TX73_018155	0.81	-0.1
3,957,705	+		TX73_018155	0.81	+0.2
3,957,705	+		TX73_018155	0.81	-0.2
3,957,713	-		TX73_018155	0.83	-0.7
3,957,713	-		TX73_018155	0.83	+0.2
3,957,724	+		TX73_018155	0.85	-0.3
3,957,745	+		TX73_018155	0.89	-0.1
3,957,800	+				+0.2
3,957,827	+		TX73_018160	0.14	-1.4
3,957,827	+		TX73_018160	0.14	-0.6
3,957,845	+		TX73_018160	0.25	+0.3
3,957,908	-		TX73_018160	0.61	+0.2
3,957,962	+				+0.9
3,957,962	+				+0.1
3,957,970	-				-0.1
3,957,973	+				-0.1
3,957,975	-				+1.0
3,957,976	+				-0.0
3,957,983	+				-0.1
3,957,983	+				-0.7
3,957,994	-				+0.1
3,958,045	-				+0.6
3,958,045	-				+1.1
3,958,165	+				+0.8
3,958,178	+				-0.2
3,958,186	+				-2.0
3,958,189	+				-0.2
3,958,194	-				+0.5