Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_011475

Experiment: MDC_bicarb with butyrate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MDC_bicarb with butyrate
2,520,538	-				-0.6
2,520,561	-				-0.6
2,520,588	-				-0.3
2,520,619	+				+0.4
2,520,707	+		TX73_011470	0.15	-0.7
2,520,707	+		TX73_011470	0.15	+0.0
2,520,716	+		TX73_011470	0.16	-0.8
2,520,716	+		TX73_011470	0.16	-1.2
2,520,716	+		TX73_011470	0.16	+0.4
2,520,716	+		TX73_011470	0.16	+0.5
2,520,716	+		TX73_011470	0.16	-0.2
2,520,716	+		TX73_011470	0.16	-0.3
2,520,721	+		TX73_011470	0.16	-1.1
2,520,724	-		TX73_011470	0.16	-0.0
2,520,724	-		TX73_011470	0.16	-0.1
2,520,724	-		TX73_011470	0.16	-1.0
2,520,724	-		TX73_011470	0.16	+0.1
2,520,726	+		TX73_011470	0.17	-0.8
2,520,726	+		TX73_011470	0.17	+0.1
2,520,756	+		TX73_011470	0.20	+0.3
2,520,779	-		TX73_011470	0.23	+0.5
2,520,800	-		TX73_011470	0.25	+0.1
2,520,843	+		TX73_011470	0.30	+0.9
2,520,843	+		TX73_011470	0.30	-0.3
2,520,856	-		TX73_011470	0.31	+0.0
2,520,896	-		TX73_011470	0.36	+0.1
2,520,936	+		TX73_011470	0.40	-1.2
2,520,952	+		TX73_011470	0.42	-0.1
2,520,965	-		TX73_011470	0.44	+0.3
2,520,965	-		TX73_011470	0.44	-0.4
2,520,978	+		TX73_011470	0.45	-0.9
2,520,993	+		TX73_011470	0.47	-0.8
2,521,047	+		TX73_011470	0.53	-0.7
2,521,055	-		TX73_011470	0.54	-0.1
2,521,082	-		TX73_011470	0.57	-0.3
2,521,099	+		TX73_011470	0.59	+0.2
2,521,107	-		TX73_011470	0.59	-0.7
2,521,108	+		TX73_011470	0.60	-0.1
2,521,108	+		TX73_011470	0.60	-0.6
2,521,146	+		TX73_011470	0.64	-0.8
2,521,168	-		TX73_011470	0.66	+0.4
2,521,175	-		TX73_011470	0.67	-0.0
2,521,195	+		TX73_011470	0.69	+0.1
2,521,203	-		TX73_011470	0.70	-0.2
2,521,203	-		TX73_011470	0.70	+0.0
2,521,204	-		TX73_011470	0.70	+1.4
2,521,218	-		TX73_011470	0.72	+1.2
2,521,222	-		TX73_011470	0.72	-0.3
2,521,223	-		TX73_011470	0.73	-1.1
2,521,248	-		TX73_011470	0.75	-0.2
2,521,254	+		TX73_011470	0.76	-0.8
2,521,305	+		TX73_011470	0.82	-0.2
2,521,316	+		TX73_011470	0.83	-0.8
2,521,320	-		TX73_011470	0.83	-0.4
2,521,356	+		TX73_011470	0.87	+0.1
2,521,363	-		TX73_011470	0.88	+0.2
2,521,410	+				-0.0
2,521,422	+				+0.2
2,521,456	+				-0.2
2,521,456	+				-0.1
2,521,457	-				-0.9
2,521,468	+		TX73_011475	0.14	-0.8
2,521,468	+		TX73_011475	0.14	+1.0
2,521,471	-		TX73_011475	0.15	-0.0
2,521,476	-		TX73_011475	0.17	-0.1
2,521,503	-		TX73_011475	0.28	-0.7
2,521,508	-		TX73_011475	0.30	-0.3
2,521,515	-		TX73_011475	0.33	-0.3
2,521,523	+		TX73_011475	0.36	-0.3
2,521,546	+		TX73_011475	0.45	+0.4
2,521,666	+				+0.2
2,521,674	-				-2.9
2,521,693	+				-0.1
2,521,693	-				-0.5
2,521,720	+				-0.2
2,521,728	-				-0.9
2,521,767	+				-0.6
2,521,775	-				+0.2
2,521,775	-				+0.1
2,521,795	+				-0.3
2,521,809	+				+0.1
2,521,812	-		TX73_011480	0.10	+0.6
2,521,817	-		TX73_011480	0.10	-0.2
2,521,836	+		TX73_011480	0.12	+0.3
2,521,841	+		TX73_011480	0.12	-0.6
2,521,841	+		TX73_011480	0.12	+0.3
2,521,849	-		TX73_011480	0.13	+0.0
2,521,849	-		TX73_011480	0.13	-0.2
2,521,860	+		TX73_011480	0.14	+0.2
2,521,863	+		TX73_011480	0.14	+0.4
2,521,894	+		TX73_011480	0.17	-0.5
2,521,907	-		TX73_011480	0.18	+0.2
2,521,924	-		TX73_011480	0.19	-0.3
2,521,932	+		TX73_011480	0.20	+0.0
2,521,951	+		TX73_011480	0.21	+0.1
2,521,951	+		TX73_011480	0.21	-0.7
2,521,968	+		TX73_011480	0.23	+0.5
2,521,990	-		TX73_011480	0.24	+0.6
2,522,036	+		TX73_011480	0.28	-0.2
2,522,041	+		TX73_011480	0.28	-0.7
2,522,073	+		TX73_011480	0.31	-0.9
2,522,074	-		TX73_011480	0.31	+0.4
2,522,079	-		TX73_011480	0.31	-0.2
2,522,081	-		TX73_011480	0.32	+0.0
2,522,140	+		TX73_011480	0.36	-0.4
2,522,148	-		TX73_011480	0.37	-0.1
2,522,170	+		TX73_011480	0.39	-0.5
2,522,179	+		TX73_011480	0.40	-0.7
2,522,179	+		TX73_011480	0.40	+0.6
2,522,187	-		TX73_011480	0.40	-1.2
2,522,192	-		TX73_011480	0.41	-0.8
2,522,240	+		TX73_011480	0.44	-0.2
2,522,240	+		TX73_011480	0.44	-0.4
2,522,240	+		TX73_011480	0.44	-0.6
2,522,240	+		TX73_011480	0.44	-1.3
2,522,240	+		TX73_011480	0.44	-0.1
2,522,240	+		TX73_011480	0.44	-1.3
2,522,243	-		TX73_011480	0.45	-1.2
2,522,246	-		TX73_011480	0.45	+0.2
2,522,248	-		TX73_011480	0.45	+0.1
2,522,248	-		TX73_011480	0.45	-0.3
2,522,248	-		TX73_011480	0.45	+0.1
2,522,248	-		TX73_011480	0.45	-1.0
2,522,248	-		TX73_011480	0.45	-0.6
2,522,248	-		TX73_011480	0.45	-0.4
2,522,248	-		TX73_011480	0.45	-0.4
2,522,248	-		TX73_011480	0.45	-0.4
2,522,257	+		TX73_011480	0.46	-0.1
2,522,320	+		TX73_011480	0.51	-0.8
2,522,332	+		TX73_011480	0.52	-0.3
2,522,335	-		TX73_011480	0.52	-0.4
2,522,417	+		TX73_011480	0.59	-0.4
2,522,428	+		TX73_011480	0.60	-0.5
2,522,436	-		TX73_011480	0.60	-0.5
2,522,485	+		TX73_011480	0.64	-0.6
2,522,487	+		TX73_011480	0.64	-0.7
2,522,506	+		TX73_011480	0.66	-0.7
2,522,514	-		TX73_011480	0.66	-0.4
2,522,528	+		TX73_011480	0.68	-0.6
2,522,540	-		TX73_011480	0.69	-0.3
2,522,565	+		TX73_011480	0.71	-0.4
2,522,565	+		TX73_011480	0.71	-0.2
2,522,565	+		TX73_011480	0.71	+0.7
2,522,565	+		TX73_011480	0.71	-0.5
2,522,565	+		TX73_011480	0.71	+0.0
2,522,565	+		TX73_011480	0.71	+0.1
2,522,565	+		TX73_011480	0.71	-0.0
2,522,568	-		TX73_011480	0.71	-0.0
2,522,573	-		TX73_011480	0.71	-0.4
2,522,573	-		TX73_011480	0.71	-0.7
2,522,585	+		TX73_011480	0.72	+1.0
2,522,593	-		TX73_011480	0.73	-0.0
2,522,598	-		TX73_011480	0.73	-1.0
2,522,598	-		TX73_011480	0.73	+0.3
2,522,598	-		TX73_011480	0.73	-1.2
2,522,605	+		TX73_011480	0.74	+0.2
2,522,641	-		TX73_011480	0.77	+0.7
2,522,651	-		TX73_011480	0.77	+0.3
2,522,665	+		TX73_011480	0.79	-0.5
2,522,665	+		TX73_011480	0.79	-0.4
2,522,666	+		TX73_011480	0.79	+0.3
2,522,674	-		TX73_011480	0.79	+0.8