Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_011465

Experiment: MDC_bicarb with butyrate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MDC_bicarb with butyrate
2,516,290	-		TX73_011460	0.71	+0.2
2,516,601	-		TX73_011460	0.82	-2.8
2,516,651	+		TX73_011460	0.83	-0.0
2,516,683	-		TX73_011460	0.85	-0.1
2,516,691	+		TX73_011460	0.85	-2.4
2,516,709	-		TX73_011460	0.86	-0.4
2,516,766	+		TX73_011460	0.88	+0.6
2,516,776	+		TX73_011460	0.88	+0.4
2,516,784	-		TX73_011460	0.88	-0.1
2,516,841	+				-0.4
2,516,851	+				+0.4
2,516,879	-				-1.2
2,516,903	+				-0.1
2,516,966	+				+0.6
2,516,976	+				-0.3
2,516,996	+				+0.2
2,517,041	+				-1.1
2,517,054	-				-0.0
2,517,167	+				-0.5
2,517,224	-				-1.3
2,517,252	-				-0.8
2,517,269	+				-1.0
2,517,277	-				-0.4
2,517,281	+				-2.7
2,517,318	+				+0.9
2,517,318	+				-0.5
2,517,326	-				-1.8
2,517,326	-				-0.8
2,517,336	+				+0.5
2,517,500	-		TX73_011465	0.11	+1.0
2,517,505	-		TX73_011465	0.11	-1.4
2,517,541	+		TX73_011465	0.12	-0.2
2,517,644	-		TX73_011465	0.15	+0.8
2,517,659	-		TX73_011465	0.16	-0.6
2,517,721	+		TX73_011465	0.18	-0.3
2,517,728	-		TX73_011465	0.18	-0.2
2,517,728	-		TX73_011465	0.18	-0.3
2,517,728	-		TX73_011465	0.18	-0.4
2,517,850	-		TX73_011465	0.22	-0.7
2,517,892	-		TX73_011465	0.23	-0.7
2,517,953	-		TX73_011465	0.25	-0.6
2,518,004	-		TX73_011465	0.26	-0.0
2,518,009	+		TX73_011465	0.27	+0.8
2,518,086	-		TX73_011465	0.29	-0.7
2,518,099	-		TX73_011465	0.29	-0.3
2,518,205	+		TX73_011465	0.32	-0.1
2,518,298	-		TX73_011465	0.35	+0.3
2,518,298	-		TX73_011465	0.35	-0.5
2,518,464	+		TX73_011465	0.40	-1.2
2,518,473	-		TX73_011465	0.41	-1.5
2,518,632	+		TX73_011465	0.45	-2.8
2,518,632	+		TX73_011465	0.45	-0.3
2,518,654	-		TX73_011465	0.46	-1.0
2,518,654	-		TX73_011465	0.46	-0.1
2,518,665	+		TX73_011465	0.46	-0.3
2,518,665	+		TX73_011465	0.46	+0.1
2,518,665	+		TX73_011465	0.46	+0.1
2,518,683	-		TX73_011465	0.47	-0.9
2,518,752	+		TX73_011465	0.49	-1.6
2,518,765	-		TX73_011465	0.49	-1.4
2,518,825	+		TX73_011465	0.51	-0.3
2,518,825	-		TX73_011465	0.51	-1.5
2,518,940	-		TX73_011465	0.55	+0.2
2,518,995	+		TX73_011465	0.56	-1.2
2,519,192	-		TX73_011465	0.62	-1.7
2,519,192	-		TX73_011465	0.62	-1.3
2,519,251	-		TX73_011465	0.64	-1.2
2,519,309	-		TX73_011465	0.66	-2.3
2,519,332	+		TX73_011465	0.67	-0.9
2,519,340	-		TX73_011465	0.67	-0.5
2,519,340	-		TX73_011465	0.67	-0.3
2,519,352	+		TX73_011465	0.67	-2.7
2,519,352	+		TX73_011465	0.67	-1.0
2,519,353	-		TX73_011465	0.67	-1.4
2,519,360	-		TX73_011465	0.67	-0.4
2,519,360	-		TX73_011465	0.67	+0.2
2,519,366	-		TX73_011465	0.68	-0.5
2,519,370	-		TX73_011465	0.68	-0.2
2,519,417	+		TX73_011465	0.69	+0.7
2,519,423	-		TX73_011465	0.69	-0.2
2,519,425	-		TX73_011465	0.69	-0.2
2,519,451	-		TX73_011465	0.70	-0.2
2,519,465	+		TX73_011465	0.71	+0.1
2,519,484	+		TX73_011465	0.71	+0.0
2,519,484	+		TX73_011465	0.71	-1.7
2,519,484	+		TX73_011465	0.71	+0.7
2,519,484	+		TX73_011465	0.71	-0.9
2,519,517	+		TX73_011465	0.72	-1.5
2,519,542	-		TX73_011465	0.73	-1.9
2,519,551	-		TX73_011465	0.73	-0.9
2,519,574	+		TX73_011465	0.74	-0.3
2,519,582	-		TX73_011465	0.74	-2.4
2,519,582	-		TX73_011465	0.74	+0.7
2,519,636	-		TX73_011465	0.76	-0.9
2,519,653	+		TX73_011465	0.76	-0.2
2,519,653	+		TX73_011465	0.76	-0.8
2,519,661	-		TX73_011465	0.77	+0.4
2,519,661	-		TX73_011465	0.77	-1.0
2,519,661	-		TX73_011465	0.77	+1.0
2,519,739	-		TX73_011465	0.79	+0.3
2,519,750	+		TX73_011465	0.79	-0.8
2,519,770	-		TX73_011465	0.80	+0.2
2,519,788	+		TX73_011465	0.80	-2.2
2,519,867	+		TX73_011465	0.83	-2.1
2,519,875	-		TX73_011465	0.83	+0.3
2,519,885	-		TX73_011465	0.83	-0.2
2,519,922	-		TX73_011465	0.85	-4.0
2,519,987	-		TX73_011465	0.86	+0.1
2,519,987	-		TX73_011465	0.86	-0.6
2,519,989	+		TX73_011465	0.87	-0.1
2,520,036	-		TX73_011465	0.88	-1.5
2,520,083	+		TX73_011465	0.89	-1.5
2,520,226	+				-0.3
2,520,231	+				-0.8
2,520,234	-				-0.9
2,520,299	-				-2.6
2,520,363	-				-0.8
2,520,538	-				-0.6
2,520,561	-				-0.6
2,520,588	-				-0.3
2,520,619	+				+0.4
2,520,707	+		TX73_011470	0.15	-0.7
2,520,707	+		TX73_011470	0.15	+0.0
2,520,716	+		TX73_011470	0.16	-0.8
2,520,716	+		TX73_011470	0.16	-1.2
2,520,716	+		TX73_011470	0.16	+0.4
2,520,716	+		TX73_011470	0.16	+0.5
2,520,716	+		TX73_011470	0.16	-0.2
2,520,716	+		TX73_011470	0.16	-0.3
2,520,721	+		TX73_011470	0.16	-1.1
2,520,724	-		TX73_011470	0.16	-0.0
2,520,724	-		TX73_011470	0.16	-0.1
2,520,724	-		TX73_011470	0.16	-1.0
2,520,724	-		TX73_011470	0.16	+0.1
2,520,726	+		TX73_011470	0.17	-0.8
2,520,726	+		TX73_011470	0.17	+0.1
2,520,756	+		TX73_011470	0.20	+0.3
2,520,779	-		TX73_011470	0.23	+0.5
2,520,800	-		TX73_011470	0.25	+0.1
2,520,843	+		TX73_011470	0.30	+0.9
2,520,843	+		TX73_011470	0.30	-0.3
2,520,856	-		TX73_011470	0.31	+0.0
2,520,896	-		TX73_011470	0.36	+0.1
2,520,936	+		TX73_011470	0.40	-1.2
2,520,952	+		TX73_011470	0.42	-0.1
2,520,965	-		TX73_011470	0.44	+0.3
2,520,965	-		TX73_011470	0.44	-0.4
2,520,978	+		TX73_011470	0.45	-0.9
2,520,993	+		TX73_011470	0.47	-0.8
2,521,047	+		TX73_011470	0.53	-0.7
2,521,055	-		TX73_011470	0.54	-0.1
2,521,082	-		TX73_011470	0.57	-0.3
2,521,099	+		TX73_011470	0.59	+0.2
2,521,107	-		TX73_011470	0.59	-0.7
2,521,108	+		TX73_011470	0.60	-0.1
2,521,108	+		TX73_011470	0.60	-0.6
2,521,146	+		TX73_011470	0.64	-0.8
2,521,168	-		TX73_011470	0.66	+0.4
2,521,175	-		TX73_011470	0.67	-0.0
2,521,195	+		TX73_011470	0.69	+0.1
2,521,203	-		TX73_011470	0.70	-0.2
2,521,203	-		TX73_011470	0.70	+0.0
2,521,204	-		TX73_011470	0.70	+1.4
2,521,218	-		TX73_011470	0.72	+1.2
2,521,222	-		TX73_011470	0.72	-0.3
2,521,223	-		TX73_011470	0.73	-1.1
2,521,248	-		TX73_011470	0.75	-0.2
2,521,254	+		TX73_011470	0.76	-0.8
2,521,305	+		TX73_011470	0.82	-0.2
2,521,316	+		TX73_011470	0.83	-0.8
2,521,320	-		TX73_011470	0.83	-0.4
2,521,356	+		TX73_011470	0.87	+0.1
2,521,363	-		TX73_011470	0.88	+0.2
2,521,410	+				-0.0
2,521,422	+				+0.2