Experiment: MDC_bicarb with butyrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_002165 and TX73_002170 are separated by 81 nucleotides TX73_002170 and TX73_002175 are separated by 103 nucleotides TX73_002175 and TX73_002180 are separated by 120 nucleotides
TX73_002165: TX73_002165 - enoyl-CoA hydratase, at 458,633 to 459,445
_002165
TX73_002170: TX73_002170 - nuclear transport factor 2 family protein, at 459,527 to 460,027
_002170
TX73_002175: TX73_002175 - glutamine amidotransferase, at 460,131 to 460,928
_002175
TX73_002180: TX73_002180 - SDR family oxidoreductase, at 461,049 to 461,828
_002180
Position (kb) 460
461 Strain fitness (log2 ratio) -2
-1
0
1 at 459.145 kb on + strand, within TX73_002165 at 459.217 kb on - strand, within TX73_002165 at 459.217 kb on - strand, within TX73_002165 at 459.217 kb on - strand, within TX73_002165 at 459.222 kb on - strand, within TX73_002165 at 459.238 kb on + strand, within TX73_002165 at 459.276 kb on + strand, within TX73_002165 at 459.367 kb on + strand at 459.394 kb on - strand at 459.427 kb on - strand at 459.443 kb on + strand at 459.477 kb on - strand at 459.479 kb on + strand at 459.484 kb on + strand at 459.484 kb on + strand at 459.492 kb on - strand at 459.543 kb on + strand at 459.543 kb on + strand at 459.543 kb on + strand at 459.543 kb on + strand at 459.543 kb on + strand at 459.543 kb on + strand at 459.551 kb on - strand at 459.551 kb on - strand at 459.551 kb on - strand at 459.551 kb on - strand at 459.551 kb on - strand at 459.576 kb on + strand at 459.576 kb on + strand at 459.620 kb on - strand, within TX73_002170 at 459.714 kb on - strand, within TX73_002170 at 459.723 kb on - strand, within TX73_002170 at 459.744 kb on + strand, within TX73_002170 at 459.752 kb on - strand, within TX73_002170 at 459.760 kb on + strand, within TX73_002170 at 459.761 kb on + strand, within TX73_002170 at 459.783 kb on + strand, within TX73_002170 at 459.789 kb on + strand, within TX73_002170 at 459.789 kb on + strand, within TX73_002170 at 459.791 kb on - strand, within TX73_002170 at 459.792 kb on - strand, within TX73_002170 at 459.955 kb on + strand, within TX73_002170 at 459.986 kb on + strand at 460.028 kb on + strand at 460.051 kb on - strand at 460.056 kb on - strand at 460.093 kb on + strand at 460.095 kb on + strand at 460.136 kb on - strand at 460.136 kb on - strand at 460.230 kb on + strand, within TX73_002175 at 460.230 kb on + strand, within TX73_002175 at 460.238 kb on - strand, within TX73_002175 at 460.306 kb on - strand, within TX73_002175 at 460.345 kb on - strand, within TX73_002175 at 460.349 kb on + strand, within TX73_002175 at 460.364 kb on - strand, within TX73_002175 at 460.370 kb on - strand, within TX73_002175 at 460.504 kb on - strand, within TX73_002175 at 460.529 kb on + strand, within TX73_002175 at 460.628 kb on - strand, within TX73_002175 at 460.662 kb on + strand, within TX73_002175 at 460.663 kb on + strand, within TX73_002175 at 460.699 kb on + strand, within TX73_002175 at 460.706 kb on - strand, within TX73_002175 at 460.707 kb on - strand, within TX73_002175 at 460.709 kb on - strand, within TX73_002175 at 460.775 kb on + strand, within TX73_002175 at 460.796 kb on + strand, within TX73_002175 at 460.804 kb on - strand, within TX73_002175 at 460.929 kb on + strand at 460.929 kb on + strand at 460.932 kb on - strand at 460.932 kb on - strand at 460.934 kb on + strand at 460.934 kb on + strand at 460.939 kb on + strand at 460.939 kb on + strand at 460.939 kb on + strand at 460.939 kb on + strand at 460.939 kb on + strand at 460.939 kb on + strand at 460.939 kb on + strand at 460.939 kb on + strand at 460.939 kb on + strand at 460.939 kb on + strand at 460.939 kb on + strand at 460.939 kb on + strand at 460.939 kb on + strand at 460.939 kb on + strand at 460.939 kb on + strand at 460.939 kb on + strand at 460.947 kb on - strand at 460.947 kb on - strand at 460.947 kb on - strand at 460.947 kb on - strand at 460.947 kb on - strand at 460.947 kb on - strand at 460.947 kb on - strand at 460.947 kb on - strand at 460.947 kb on - strand at 460.947 kb on - strand at 460.947 kb on - strand at 460.962 kb on - strand at 460.970 kb on + strand at 461.005 kb on + strand at 461.066 kb on - strand at 461.071 kb on - strand at 461.135 kb on + strand, within TX73_002180 at 461.135 kb on + strand, within TX73_002180 at 461.143 kb on - strand, within TX73_002180 at 461.153 kb on - strand, within TX73_002180 at 461.155 kb on + strand, within TX73_002180 at 461.174 kb on + strand, within TX73_002180 at 461.174 kb on + strand, within TX73_002180 at 461.174 kb on + strand, within TX73_002180 at 461.179 kb on + strand, within TX73_002180 at 461.182 kb on - strand, within TX73_002180 at 461.182 kb on - strand, within TX73_002180 at 461.199 kb on - strand, within TX73_002180 at 461.200 kb on - strand, within TX73_002180 at 461.207 kb on - strand, within TX73_002180 at 461.209 kb on - strand, within TX73_002180 at 461.212 kb on + strand, within TX73_002180 at 461.212 kb on + strand, within TX73_002180 at 461.214 kb on + strand, within TX73_002180 at 461.225 kb on - strand, within TX73_002180 at 461.229 kb on + strand, within TX73_002180 at 461.232 kb on - strand, within TX73_002180 at 461.237 kb on - strand, within TX73_002180 at 461.237 kb on - strand, within TX73_002180 at 461.281 kb on - strand, within TX73_002180 at 461.287 kb on - strand, within TX73_002180 at 461.287 kb on - strand, within TX73_002180 at 461.287 kb on - strand, within TX73_002180 at 461.292 kb on - strand, within TX73_002180 at 461.297 kb on - strand, within TX73_002180 at 461.338 kb on + strand, within TX73_002180 at 461.351 kb on + strand, within TX73_002180 at 461.359 kb on - strand, within TX73_002180 at 461.373 kb on + strand, within TX73_002180 at 461.387 kb on - strand, within TX73_002180 at 461.427 kb on - strand, within TX73_002180 at 461.427 kb on - strand, within TX73_002180 at 461.429 kb on - strand, within TX73_002180 at 461.498 kb on - strand, within TX73_002180 at 461.534 kb on - strand, within TX73_002180 at 461.552 kb on - strand, within TX73_002180 at 461.560 kb on - strand, within TX73_002180 at 461.575 kb on + strand, within TX73_002180 at 461.577 kb on + strand, within TX73_002180 at 461.606 kb on + strand, within TX73_002180 at 461.629 kb on - strand, within TX73_002180 at 461.643 kb on - strand, within TX73_002180 at 461.666 kb on + strand, within TX73_002180 at 461.666 kb on + strand, within TX73_002180 at 461.666 kb on + strand, within TX73_002180 at 461.680 kb on - strand, within TX73_002180 at 461.688 kb on + strand, within TX73_002180 at 461.691 kb on - strand, within TX73_002180 at 461.696 kb on - strand, within TX73_002180 at 461.696 kb on - strand, within TX73_002180 at 461.782 kb on - strand at 461.792 kb on - strand at 461.799 kb on - strand at 461.810 kb on + strand at 461.875 kb on - strand at 461.875 kb on - strand at 461.880 kb on - strand at 461.882 kb on + strand at 461.883 kb on + strand at 461.885 kb on - strand at 461.885 kb on - strand at 461.885 kb on - strand at 461.904 kb on + strand at 461.912 kb on - strand at 461.913 kb on + strand at 461.917 kb on - strand at 461.920 kb on - strand at 461.921 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MDC_bicarb with butyrate remove 459,145 + TX73_002165 0.63 -0.4 459,217 - TX73_002165 0.72 +0.9 459,217 - TX73_002165 0.72 -0.1 459,217 - TX73_002165 0.72 -0.2 459,222 - TX73_002165 0.72 -0.4 459,238 + TX73_002165 0.74 -1.9 459,276 + TX73_002165 0.79 -1.0 459,367 + +0.4 459,394 - -0.7 459,427 - +0.1 459,443 + +0.4 459,477 - +0.2 459,479 + +0.7 459,484 + +0.1 459,484 + +0.8 459,492 - +0.3 459,543 + +0.1 459,543 + +0.2 459,543 + +1.1 459,543 + +0.3 459,543 + +0.6 459,543 + +0.4 459,551 - -1.0 459,551 - +0.2 459,551 - -0.1 459,551 - -0.1 459,551 - -0.0 459,576 + +0.3 459,576 + -1.1 459,620 - TX73_002170 0.19 -0.1 459,714 - TX73_002170 0.37 -0.1 459,723 - TX73_002170 0.39 -0.3 459,744 + TX73_002170 0.43 -0.2 459,752 - TX73_002170 0.45 -1.2 459,760 + TX73_002170 0.47 -1.4 459,761 + TX73_002170 0.47 +0.9 459,783 + TX73_002170 0.51 +0.1 459,789 + TX73_002170 0.52 +0.3 459,789 + TX73_002170 0.52 -0.1 459,791 - TX73_002170 0.53 -0.3 459,792 - TX73_002170 0.53 +0.2 459,955 + TX73_002170 0.85 -1.1 459,986 + -0.3 460,028 + +0.4 460,051 - -1.9 460,056 - -0.2 460,093 + +0.4 460,095 + -1.4 460,136 - -0.1 460,136 - -1.8 460,230 + TX73_002175 0.12 +0.0 460,230 + TX73_002175 0.12 -0.3 460,238 - TX73_002175 0.13 +0.2 460,306 - TX73_002175 0.22 -0.7 460,345 - TX73_002175 0.27 +0.5 460,349 + TX73_002175 0.27 +0.0 460,364 - TX73_002175 0.29 +0.0 460,370 - TX73_002175 0.30 -0.6 460,504 - TX73_002175 0.47 +0.3 460,529 + TX73_002175 0.50 +0.3 460,628 - TX73_002175 0.62 -1.3 460,662 + TX73_002175 0.67 +0.3 460,663 + TX73_002175 0.67 -0.2 460,699 + TX73_002175 0.71 +0.1 460,706 - TX73_002175 0.72 +0.1 460,707 - TX73_002175 0.72 +0.2 460,709 - TX73_002175 0.72 +0.1 460,775 + TX73_002175 0.81 +0.4 460,796 + TX73_002175 0.83 +0.6 460,804 - TX73_002175 0.84 -0.5 460,929 + +0.3 460,929 + -0.2 460,932 - +0.3 460,932 - -0.0 460,934 + +0.5 460,934 + -0.4 460,939 + -0.0 460,939 + -0.4 460,939 + +1.1 460,939 + -0.2 460,939 + -0.1 460,939 + +0.2 460,939 + +0.8 460,939 + +1.1 460,939 + +0.3 460,939 + -0.3 460,939 + +0.3 460,939 + +0.1 460,939 + -0.1 460,939 + +0.3 460,939 + +0.0 460,939 + +0.4 460,947 - -1.0 460,947 - +0.6 460,947 - +0.2 460,947 - +0.8 460,947 - -0.7 460,947 - -0.2 460,947 - -0.1 460,947 - -0.2 460,947 - -0.6 460,947 - -0.2 460,947 - +0.9 460,962 - +0.8 460,970 + -0.3 461,005 + -0.4 461,066 - -0.3 461,071 - +0.9 461,135 + TX73_002180 0.11 +1.6 461,135 + TX73_002180 0.11 +0.7 461,143 - TX73_002180 0.12 +0.3 461,153 - TX73_002180 0.13 +0.6 461,155 + TX73_002180 0.14 +0.4 461,174 + TX73_002180 0.16 +0.1 461,174 + TX73_002180 0.16 -0.0 461,174 + TX73_002180 0.16 +0.3 461,179 + TX73_002180 0.17 +0.4 461,182 - TX73_002180 0.17 +0.2 461,182 - TX73_002180 0.17 +0.8 461,199 - TX73_002180 0.19 +0.1 461,200 - TX73_002180 0.19 +0.6 461,207 - TX73_002180 0.20 +0.4 461,209 - TX73_002180 0.21 +0.7 461,212 + TX73_002180 0.21 +0.4 461,212 + TX73_002180 0.21 +0.1 461,214 + TX73_002180 0.21 +0.6 461,225 - TX73_002180 0.23 +0.6 461,229 + TX73_002180 0.23 +0.6 461,232 - TX73_002180 0.23 +0.7 461,237 - TX73_002180 0.24 +0.9 461,237 - TX73_002180 0.24 +0.7 461,281 - TX73_002180 0.30 +0.3 461,287 - TX73_002180 0.31 -1.2 461,287 - TX73_002180 0.31 +0.4 461,287 - TX73_002180 0.31 -0.4 461,292 - TX73_002180 0.31 +0.1 461,297 - TX73_002180 0.32 +0.1 461,338 + TX73_002180 0.37 +0.1 461,351 + TX73_002180 0.39 +0.6 461,359 - TX73_002180 0.40 +0.8 461,373 + TX73_002180 0.42 +0.2 461,387 - TX73_002180 0.43 -0.1 461,427 - TX73_002180 0.48 +0.2 461,427 - TX73_002180 0.48 +0.7 461,429 - TX73_002180 0.49 +0.5 461,498 - TX73_002180 0.58 +0.2 461,534 - TX73_002180 0.62 -0.3 461,552 - TX73_002180 0.64 +0.6 461,560 - TX73_002180 0.66 +0.5 461,575 + TX73_002180 0.67 +1.1 461,577 + TX73_002180 0.68 +0.0 461,606 + TX73_002180 0.71 +0.7 461,629 - TX73_002180 0.74 +0.3 461,643 - TX73_002180 0.76 +0.9 461,666 + TX73_002180 0.79 +0.4 461,666 + TX73_002180 0.79 +0.1 461,666 + TX73_002180 0.79 -0.0 461,680 - TX73_002180 0.81 +0.1 461,688 + TX73_002180 0.82 +0.6 461,691 - TX73_002180 0.82 -0.3 461,696 - TX73_002180 0.83 +0.3 461,696 - TX73_002180 0.83 -0.2 461,782 - +0.6 461,792 - +0.3 461,799 - +0.2 461,810 + +0.3 461,875 - -0.1 461,875 - -0.1 461,880 - -0.1 461,882 + -0.5 461,883 + -0.5 461,885 - +0.1 461,885 - -0.1 461,885 - +1.6 461,904 + -0.9 461,912 - -0.5 461,913 + -0.3 461,917 - +0.1 461,920 - -0.4 461,921 - -0.1
Or see this region's nucleotide sequence