Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_023825

Experiment: MDC_bicarb with butyrate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MDC_bicarb with butyrate
5,170,114	+		TX73_023820	0.13	+3.1
5,170,125	+		TX73_023820	0.14	+0.6
5,170,133	-		TX73_023820	0.15	+0.2
5,170,155	-		TX73_023820	0.17	+0.8
5,170,158	-		TX73_023820	0.17	-0.5
5,170,178	+		TX73_023820	0.19	+0.0
5,170,214	-		TX73_023820	0.22	+1.1
5,170,219	+		TX73_023820	0.23	+0.4
5,170,222	-		TX73_023820	0.23	+0.7
5,170,244	+		TX73_023820	0.25	+0.8
5,170,252	-		TX73_023820	0.26	+0.4
5,170,261	-		TX73_023820	0.27	+0.2
5,170,297	+		TX73_023820	0.30	+0.6
5,170,322	+		TX73_023820	0.32	-0.5
5,170,360	+		TX73_023820	0.35	+0.0
5,170,416	+		TX73_023820	0.40	+0.3
5,170,457	-		TX73_023820	0.44	-0.6
5,170,476	+		TX73_023820	0.46	-0.3
5,170,484	-		TX73_023820	0.46	+0.7
5,170,491	+		TX73_023820	0.47	+0.8
5,170,491	+		TX73_023820	0.47	-0.9
5,170,491	+		TX73_023820	0.47	+0.6
5,170,496	+		TX73_023820	0.47	+0.7
5,170,499	-		TX73_023820	0.48	+0.9
5,170,516	+		TX73_023820	0.49	+0.2
5,170,516	+		TX73_023820	0.49	+0.6
5,170,516	+		TX73_023820	0.49	+1.2
5,170,519	-		TX73_023820	0.49	-0.0
5,170,519	-		TX73_023820	0.49	+2.2
5,170,521	+		TX73_023820	0.50	+1.0
5,170,521	-		TX73_023820	0.50	+0.4
5,170,560	+		TX73_023820	0.53	+0.7
5,170,560	+		TX73_023820	0.53	+0.7
5,170,567	+		TX73_023820	0.54	-0.1
5,170,568	-		TX73_023820	0.54	+0.9
5,170,575	-		TX73_023820	0.54	-1.1
5,170,580	-		TX73_023820	0.55	-0.1
5,170,580	-		TX73_023820	0.55	+0.7
5,170,584	+		TX73_023820	0.55	+0.3
5,170,593	+		TX73_023820	0.56	+0.5
5,170,601	-		TX73_023820	0.57	+0.3
5,170,601	-		TX73_023820	0.57	+0.5
5,170,611	-		TX73_023820	0.58	+0.8
5,170,623	-		TX73_023820	0.59	+0.4
5,170,652	+		TX73_023820	0.61	+1.3
5,170,657	+		TX73_023820	0.62	-0.5
5,170,677	+		TX73_023820	0.63	+0.5
5,170,687	-		TX73_023820	0.64	+0.6
5,170,692	-		TX73_023820	0.65	+1.9
5,170,705	+		TX73_023820	0.66	+0.1
5,170,776	+		TX73_023820	0.72	+0.1
5,170,776	+		TX73_023820	0.72	+0.4
5,170,784	-		TX73_023820	0.73	+0.6
5,170,784	-		TX73_023820	0.73	+0.7
5,170,784	-		TX73_023820	0.73	+0.4
5,170,790	+		TX73_023820	0.73	+0.5
5,170,828	+		TX73_023820	0.77	+0.2
5,170,828	+		TX73_023820	0.77	-0.5
5,170,889	+		TX73_023820	0.82	+0.1
5,170,892	-		TX73_023820	0.82	+0.3
5,170,897	-		TX73_023820	0.83	+0.5
5,170,897	-		TX73_023820	0.83	+0.5
5,170,897	-		TX73_023820	0.83	+0.7
5,170,897	-		TX73_023820	0.83	+0.3
5,170,918	+		TX73_023820	0.85	+0.4
5,170,940	-		TX73_023820	0.87	+0.4
5,170,970	-		TX73_023820	0.89	+0.3
5,170,978	-				+0.4
5,170,980	+				+0.7
5,170,985	+				+0.0
5,170,985	+				+2.0
5,171,000	+				+1.4
5,171,010	+				+0.2
5,171,018	+				+0.5
5,171,020	+				+0.2
5,171,020	-				-0.1
5,171,092	-				+0.9
5,171,123	-				-0.0
5,171,135	-				+0.5
5,171,140	-				+0.2
5,171,143	+				+0.8
5,171,148	+				+0.5
5,171,175	-				+0.6
5,171,176	+				+0.9
5,171,176	+				+0.8
5,171,184	+				+0.1
5,171,184	+				+0.4
5,171,184	-				+1.4
5,171,192	-				-0.0
5,171,206	-				-0.3
5,171,249	-				-0.3
5,171,259	+				+0.4
5,171,260	-				+0.6
5,171,260	-				+0.7
5,171,265	+		TX73_023825	0.10	+0.5
5,171,278	-		TX73_023825	0.11	-0.1
5,171,290	+		TX73_023825	0.12	+1.2
5,171,320	+		TX73_023825	0.14	-0.4
5,171,320	+		TX73_023825	0.14	+0.3
5,171,320	+		TX73_023825	0.14	+0.1
5,171,340	+		TX73_023825	0.15	+0.2
5,171,345	+		TX73_023825	0.15	+0.5
5,171,345	+		TX73_023825	0.15	+0.9
5,171,348	-		TX73_023825	0.15	+0.1
5,171,348	-		TX73_023825	0.15	+0.5
5,171,348	-		TX73_023825	0.15	+0.4
5,171,366	+		TX73_023825	0.17	+2.3
5,171,398	-		TX73_023825	0.19	+0.3
5,171,410	+		TX73_023825	0.20	+0.6
5,171,446	-		TX73_023825	0.22	+1.1
5,171,474	+		TX73_023825	0.24	+0.3
5,171,497	-		TX73_023825	0.25	+0.3
5,171,529	-		TX73_023825	0.27	+0.1
5,171,548	+		TX73_023825	0.29	+0.5
5,171,588	-		TX73_023825	0.31	-0.2
5,171,593	+		TX73_023825	0.32	+0.5
5,171,595	+		TX73_023825	0.32	+1.2
5,171,606	-		TX73_023825	0.32	+0.5
5,171,613	-		TX73_023825	0.33	+0.1
5,171,670	+		TX73_023825	0.37	+0.2
5,171,707	-		TX73_023825	0.39	+0.1
5,171,748	+		TX73_023825	0.42	+0.8
5,171,748	+		TX73_023825	0.42	+0.4
5,171,771	+		TX73_023825	0.43	+0.4
5,171,776	+		TX73_023825	0.43	+0.5
5,171,826	-		TX73_023825	0.47	+0.9
5,171,837	+		TX73_023825	0.47	+0.8
5,171,860	+		TX73_023825	0.49	-0.3
5,171,865	+		TX73_023825	0.49	+0.1
5,171,868	-		TX73_023825	0.49	+0.7
5,171,868	-		TX73_023825	0.49	+1.1
5,171,868	-		TX73_023825	0.49	+0.6
5,171,868	-		TX73_023825	0.49	+0.1
5,171,868	-		TX73_023825	0.49	+0.2
5,171,873	-		TX73_023825	0.50	+0.5
5,171,878	-		TX73_023825	0.50	+0.2
5,171,893	+		TX73_023825	0.51	+0.9
5,171,901	-		TX73_023825	0.52	+0.3
5,171,941	+		TX73_023825	0.54	+1.4
5,171,993	-		TX73_023825	0.58	+0.1
5,171,993	-		TX73_023825	0.58	+0.6
5,172,022	+		TX73_023825	0.60	+0.4
5,172,030	-		TX73_023825	0.60	+0.6
5,172,030	-		TX73_023825	0.60	+0.1
5,172,039	-		TX73_023825	0.61	+1.0
5,172,055	+		TX73_023825	0.62	-0.0
5,172,064	-		TX73_023825	0.62	+0.3
5,172,064	-		TX73_023825	0.62	+0.3
5,172,065	+		TX73_023825	0.62	+0.5
5,172,068	+		TX73_023825	0.63	+0.2
5,172,080	+		TX73_023825	0.63	+0.3
5,172,080	+		TX73_023825	0.63	+0.5
5,172,082	+		TX73_023825	0.63	+0.3
5,172,090	-		TX73_023825	0.64	-0.7
5,172,126	+		TX73_023825	0.66	+0.8
5,172,154	-		TX73_023825	0.68	+0.3
5,172,154	-		TX73_023825	0.68	+1.3
5,172,156	+		TX73_023825	0.68	+0.4
5,172,159	-		TX73_023825	0.68	+0.7
5,172,161	+		TX73_023825	0.69	+0.9
5,172,161	+		TX73_023825	0.69	+1.4
5,172,164	-		TX73_023825	0.69	+0.5
5,172,164	-		TX73_023825	0.69	-0.2
5,172,188	-		TX73_023825	0.70	-1.1
5,172,196	-		TX73_023825	0.71	+0.8
5,172,241	+		TX73_023825	0.74	+1.5
5,172,250	-		TX73_023825	0.74	+0.3
5,172,257	+		TX73_023825	0.75	+0.3
5,172,283	+		TX73_023825	0.77	-0.0
5,172,317	+		TX73_023825	0.79	+0.8
5,172,317	+		TX73_023825	0.79	-0.1
5,172,326	-		TX73_023825	0.79	+1.5
5,172,342	+		TX73_023825	0.80	+0.4
5,172,376	+		TX73_023825	0.83	+0.6
5,172,379	-		TX73_023825	0.83	+0.5
5,172,389	+		TX73_023825	0.84	+0.5
5,172,389	+		TX73_023825	0.84	+0.7
5,172,389	+		TX73_023825	0.84	-0.0
5,172,389	+		TX73_023825	0.84	+0.6
5,172,389	+		TX73_023825	0.84	+0.7
5,172,389	+		TX73_023825	0.84	-0.4
5,172,389	+		TX73_023825	0.84	+0.1
5,172,397	-		TX73_023825	0.84	+0.6
5,172,397	-		TX73_023825	0.84	+0.5
5,172,397	-		TX73_023825	0.84	+1.0
5,172,397	-		TX73_023825	0.84	-1.2
5,172,397	-		TX73_023825	0.84	-0.0
5,172,397	-		TX73_023825	0.84	+1.2
5,172,397	-		TX73_023825	0.84	+0.3
5,172,397	-		TX73_023825	0.84	+0.5
5,172,402	-		TX73_023825	0.84	+0.6
5,172,402	-		TX73_023825	0.84	+1.6
5,172,408	+		TX73_023825	0.85	+0.3
5,172,414	-		TX73_023825	0.85	+0.7
5,172,416	-		TX73_023825	0.85	+1.2
5,172,419	+		TX73_023825	0.85	+0.7
5,172,427	-		TX73_023825	0.86	+0.3
5,172,428	-		TX73_023825	0.86	+0.2
5,172,473	+		TX73_023825	0.89	+0.5
5,172,478	-		TX73_023825	0.89	+0.5
5,172,478	-		TX73_023825	0.89	+0.7
5,172,480	+		TX73_023825	0.89	+1.2
5,172,484	+		TX73_023825	0.90	-0.4
5,172,489	+				-0.0
5,172,489	+				+0.7
5,172,489	+				+0.4
5,172,489	+				+1.3
5,172,489	+				+0.4
5,172,492	-				+0.8
5,172,492	-				-0.5
5,172,497	-				+0.2
5,172,499	+				+0.1
5,172,499	+				+0.1
5,172,507	-				+0.3
5,172,517	+				+0.1
5,172,517	+				-0.4
5,172,518	-				+0.8
5,172,533	-				+0.2
5,172,535	-				+1.0
5,172,543	+				+0.5
5,172,551	-				+0.6
5,172,562	-				-0.3
5,172,641	+				+0.5
5,172,722	+		TX73_023830	0.17	+0.6
5,172,778	-		TX73_023830	0.33	+0.7
5,172,779	+		TX73_023830	0.33	+0.5
5,172,787	-		TX73_023830	0.35	-0.0
5,172,795	-		TX73_023830	0.37	-0.0
5,172,800	-		TX73_023830	0.39	-0.9
5,172,807	+		TX73_023830	0.41	+0.2
5,172,816	-		TX73_023830	0.43	+0.3
5,172,909	-		TX73_023830	0.69	+0.7
5,172,929	+		TX73_023830	0.74	+0.6
5,172,954	+		TX73_023830	0.81	+0.4
5,172,954	+		TX73_023830	0.81	-0.8
5,172,964	+		TX73_023830	0.84	-0.3
5,172,974	-		TX73_023830	0.86	-0.1
5,172,985	-		TX73_023830	0.89	-0.8
5,172,987	+				-0.4
5,173,008	+				+0.4
5,173,050	-				-0.7
5,173,053	+				-0.5
5,173,077	-				+0.9
5,173,096	+				+0.4
5,173,104	-				+0.4
5,173,133	-				-0.9
5,173,151	+				+0.4
5,173,201	+				-0.3
5,173,208	-				+0.8
5,173,243	-				-0.6
5,173,255	+				+0.5
5,173,373	-				-1.1
5,173,375	+				+0.6
5,173,390	+				-0.0
5,173,407	-				+0.0
5,173,451	+		TX73_023835	0.13	+0.1
5,173,459	-		TX73_023835	0.13	-0.5
5,173,464	-		TX73_023835	0.14	+0.1
5,173,477	-		TX73_023835	0.15	+0.0
5,173,477	-		TX73_023835	0.15	-0.1
5,173,484	+		TX73_023835	0.15	-1.6
5,173,491	+		TX73_023835	0.16	+1.1
5,173,512	-		TX73_023835	0.17	-1.7
5,173,537	-		TX73_023835	0.19	-0.2
5,173,537	-		TX73_023835	0.19	+0.3
5,173,584	-		TX73_023835	0.23	-0.6