Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_022670

Experiment: MDC_bicarb with butyrate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MDC_bicarb with butyrate
4,922,748	-				-0.3
4,922,770	+				-1.3
4,922,770	+				-0.3
4,922,780	+				-0.0
4,922,781	+				+0.5
4,922,789	-				+0.3
4,922,793	+				-0.3
4,922,795	-				-0.1
4,922,799	-				-1.2
4,922,799	-				+0.2
4,922,801	-				+0.0
4,922,802	-				+0.2
4,922,807	-				-0.1
4,922,835	-				+0.1
4,922,840	-				+0.2
4,922,840	-				-0.3
4,922,843	+				+0.0
4,922,847	-				-1.2
4,922,883	+				-0.6
4,922,883	+				-0.6
4,922,883	+				+0.4
4,922,883	+				+0.9
4,922,891	-				+1.0
4,922,891	-				-0.6
4,922,891	-				-0.0
4,922,891	-				+0.5
4,922,910	+				-0.3
4,922,913	+				-1.1
4,922,918	-				+0.1
4,922,919	+				+0.2
4,922,919	+				-0.4
4,922,919	+				+0.5
4,922,919	+				+0.4
4,922,919	+				-0.0
4,922,919	+				+0.5
4,922,919	+				-0.4
4,922,919	+				-0.0
4,922,919	+				-0.2
4,922,919	-				+0.8
4,922,927	-				+0.4
4,922,927	-				+0.2
4,922,927	-				-0.5
4,922,927	-				+0.7
4,922,927	-				-0.5
4,922,927	-				+0.3
4,922,927	-				-0.4
4,922,927	-				-1.8
4,922,927	-				-0.0
4,922,927	-				-0.4
4,922,929	+				-0.2
4,922,930	+				-0.2
4,922,930	+				-0.1
4,922,930	+				+1.4
4,922,938	-				+0.3
4,922,938	-				-0.5
4,922,938	-				+0.8
4,922,938	-				-0.5
4,922,938	-				-1.1
4,922,958	+				+0.6
4,922,962	-				-0.2
4,922,973	+				-0.2
4,922,981	-				-1.3
4,922,981	-				+0.5
4,922,983	-				-0.6
4,923,001	-		TX73_022660	0.14	-0.2
4,923,047	+		TX73_022660	0.25	+0.4
4,923,060	-		TX73_022660	0.28	+0.7
4,923,062	+		TX73_022660	0.29	-0.4
4,923,074	-		TX73_022660	0.31	+0.2
4,923,106	-		TX73_022660	0.39	+0.1
4,923,108	+		TX73_022660	0.40	+0.5
4,923,108	-		TX73_022660	0.40	+0.2
4,923,161	+		TX73_022660	0.52	+0.1
4,923,161	+		TX73_022660	0.52	-0.2
4,923,161	+		TX73_022660	0.52	+0.7
4,923,161	+		TX73_022660	0.52	+1.1
4,923,161	+		TX73_022660	0.52	-0.4
4,923,168	+		TX73_022660	0.54	+0.5
4,923,176	-		TX73_022660	0.56	-0.5
4,923,189	+		TX73_022660	0.59	-0.4
4,923,242	-		TX73_022660	0.71	-0.9
4,923,248	-		TX73_022660	0.73	-0.4
4,923,248	-		TX73_022660	0.73	+0.3
4,923,258	+		TX73_022660	0.75	-1.4
4,923,258	-		TX73_022660	0.75	+0.9
4,923,266	-		TX73_022660	0.77	-0.9
4,923,289	+		TX73_022660	0.83	-1.4
4,923,289	+		TX73_022660	0.83	-1.2
4,923,289	+		TX73_022660	0.83	-0.1
4,923,289	+		TX73_022660	0.83	-0.5
4,923,295	-		TX73_022660	0.84	-1.3
4,923,297	-		TX73_022660	0.85	-0.7
4,923,302	+		TX73_022660	0.86	-0.1
4,923,307	+		TX73_022660	0.87	+0.7
4,923,309	-		TX73_022660	0.87	-0.9
4,923,310	-		TX73_022660	0.88	+0.5
4,923,311	+		TX73_022660	0.88	-1.0
4,923,313	+		TX73_022660	0.88	+0.5
4,923,319	-		TX73_022660	0.90	+0.2
4,923,345	+				+0.3
4,923,358	+				+0.7
4,923,358	+				+0.1
4,923,361	-				+0.0
4,923,365	+				-0.1
4,923,365	+				-0.7
4,923,373	-				+0.3
4,923,415	+				-0.1
4,923,438	+				-0.3
4,923,438	+				-0.2
4,923,438	+				-0.1
4,923,443	-				+0.7
4,923,446	-				+0.4
4,923,446	-				-0.4
4,923,446	-				+0.6
4,923,485	+		TX73_022665	0.26	-0.2
4,923,485	+		TX73_022665	0.26	+0.7
4,923,487	+		TX73_022665	0.27	-0.1
4,923,493	-		TX73_022665	0.30	-0.5
4,923,522	+		TX73_022665	0.44	+0.0
4,923,522	+		TX73_022665	0.44	-0.1
4,923,522	+		TX73_022665	0.44	+0.1
4,923,530	-		TX73_022665	0.48	-0.3
4,923,530	-		TX73_022665	0.48	-0.4
4,923,540	-		TX73_022665	0.53	+0.4
4,923,543	+		TX73_022665	0.54	+0.5
4,923,563	-		TX73_022665	0.64	+0.0
4,923,639	+				+0.5
4,923,639	-				-0.6
4,923,644	+				-1.1
4,923,652	-				+0.3
4,923,663	+				+0.4
4,923,663	+				+0.2
4,923,772	-				+0.6
4,923,772	-				-0.0
4,923,773	-				+0.2
4,923,802	-				+0.8
4,923,852	+		TX73_022670	0.10	+0.1
4,923,852	+		TX73_022670	0.10	+0.4
4,923,852	+		TX73_022670	0.10	+0.6
4,923,860	-		TX73_022670	0.11	-1.3
4,923,860	-		TX73_022670	0.11	-0.9
4,923,911	-		TX73_022670	0.14	+1.5
4,923,919	-		TX73_022670	0.15	+0.5
4,923,972	+		TX73_022670	0.19	+1.0
4,923,980	-		TX73_022670	0.19	+1.0
4,924,009	+		TX73_022670	0.21	+0.1
4,924,034	-		TX73_022670	0.23	-0.2
4,924,061	-		TX73_022670	0.25	+0.3
4,924,092	+		TX73_022670	0.27	+1.6
4,924,100	-		TX73_022670	0.28	+0.9
4,924,100	-		TX73_022670	0.28	+0.9
4,924,100	-		TX73_022670	0.28	+0.5
4,924,100	-		TX73_022670	0.28	+0.4
4,924,102	-		TX73_022670	0.28	-0.0
4,924,104	+		TX73_022670	0.28	-0.2
4,924,110	-		TX73_022670	0.28	-0.9
4,924,116	+		TX73_022670	0.29	-0.3
4,924,178	-		TX73_022670	0.33	+0.3
4,924,180	-		TX73_022670	0.33	+0.6
4,924,190	+		TX73_022670	0.34	+0.6
4,924,197	-		TX73_022670	0.34	+1.2
4,924,253	+		TX73_022670	0.38	-0.3
4,924,308	-		TX73_022670	0.42	-0.0
4,924,340	+		TX73_022670	0.44	+0.3
4,924,350	+		TX73_022670	0.45	+0.4
4,924,355	+		TX73_022670	0.45	-2.7
4,924,358	-		TX73_022670	0.46	+0.8
4,924,362	+		TX73_022670	0.46	+1.1
4,924,367	+		TX73_022670	0.46	+0.1
4,924,406	-		TX73_022670	0.49	+0.2
4,924,425	+		TX73_022670	0.50	+0.3
4,924,433	-		TX73_022670	0.51	+0.7
4,924,433	-		TX73_022670	0.51	+0.2
4,924,460	-		TX73_022670	0.53	+0.7
4,924,468	+		TX73_022670	0.53	+0.8
4,924,473	+		TX73_022670	0.54	+0.9
4,924,473	+		TX73_022670	0.54	+0.4
4,924,473	+		TX73_022670	0.54	+0.2
4,924,479	+		TX73_022670	0.54	+1.4
4,924,479	+		TX73_022670	0.54	+0.4
4,924,487	+		TX73_022670	0.55	+0.9
4,924,487	-		TX73_022670	0.55	+0.7
4,924,487	-		TX73_022670	0.55	+0.0
4,924,487	-		TX73_022670	0.55	+1.3
4,924,502	-		TX73_022670	0.56	+0.4
4,924,520	-		TX73_022670	0.57	+0.2
4,924,538	+		TX73_022670	0.58	+0.1
4,924,545	-		TX73_022670	0.59	+0.1
4,924,546	-		TX73_022670	0.59	+0.6
4,924,618	+		TX73_022670	0.64	-0.7
4,924,623	+		TX73_022670	0.64	+0.5
4,924,626	-		TX73_022670	0.64	+0.0
4,924,628	-		TX73_022670	0.64	+0.8
4,924,628	-		TX73_022670	0.64	-0.0
4,924,628	-		TX73_022670	0.64	+0.5
4,924,631	-		TX73_022670	0.65	+0.1
4,924,655	+		TX73_022670	0.66	+0.1
4,924,667	-		TX73_022670	0.67	+0.6
4,924,696	+		TX73_022670	0.69	+0.8
4,924,696	-		TX73_022670	0.69	-0.4
4,924,698	-		TX73_022670	0.69	-0.8
4,924,705	-		TX73_022670	0.70	+0.5
4,924,707	+		TX73_022670	0.70	-0.5
4,924,764	+		TX73_022670	0.74	+0.9
4,924,812	+		TX73_022670	0.77	+0.0
4,924,836	+		TX73_022670	0.79	+1.0
4,924,893	-		TX73_022670	0.83	+0.5
4,925,151	-				+0.1
4,925,174	-				-0.2
4,925,204	-				+1.0
4,925,222	-				+0.8
4,925,264	+				+0.8
4,925,269	+				+0.4
4,925,277	-		TX73_022675	0.10	-0.5
4,925,277	-		TX73_022675	0.10	+0.3
4,925,310	+		TX73_022675	0.13	+0.7
4,925,312	-		TX73_022675	0.13	+0.5
4,925,355	-		TX73_022675	0.16	-0.4
4,925,375	+		TX73_022675	0.17	+1.5
4,925,375	+		TX73_022675	0.17	+0.7
4,925,375	+		TX73_022675	0.17	+0.9
4,925,378	-		TX73_022675	0.18	+0.3
4,925,383	-		TX73_022675	0.18	-0.8
4,925,383	-		TX73_022675	0.18	+0.6
4,925,383	-		TX73_022675	0.18	+0.5
4,925,383	-		TX73_022675	0.18	+0.6
4,925,385	+		TX73_022675	0.18	+0.5
4,925,416	-		TX73_022675	0.20	+0.7
4,925,433	-		TX73_022675	0.21	+0.9
4,925,526	+		TX73_022675	0.28	+0.0
4,925,560	+		TX73_022675	0.31	+1.2
4,925,569	-		TX73_022675	0.31	+1.2
4,925,652	-		TX73_022675	0.37	+0.1
4,925,653	+		TX73_022675	0.37	+0.4
4,925,661	-		TX73_022675	0.38	+0.8
4,925,672	+		TX73_022675	0.39	-0.0
4,925,673	+		TX73_022675	0.39	+0.7
4,925,675	+		TX73_022675	0.39	-0.6
4,925,718	+		TX73_022675	0.42	+0.7
4,925,809	-		TX73_022675	0.48	-0.3
4,925,829	+		TX73_022675	0.50	+0.6
4,925,879	+		TX73_022675	0.54	+0.2
4,925,907	-		TX73_022675	0.56	+0.8
4,925,944	+		TX73_022675	0.58	+1.2
4,925,980	-		TX73_022675	0.61	+0.9
4,925,987	+		TX73_022675	0.61	-0.2
4,925,995	+		TX73_022675	0.62	+0.0
4,925,995	-		TX73_022675	0.62	+1.1
4,926,090	+		TX73_022675	0.69	+0.7
4,926,122	+		TX73_022675	0.71	+0.3
4,926,122	+		TX73_022675	0.71	+0.9