Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_013765

Experiment: MDC_bicarb with butyrate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MDC_bicarb with butyrate
3,021,580	-				-0.1
3,021,605	+				-1.0
3,021,617	+				-0.3
3,021,632	-				+0.8
3,021,642	+				+3.2
3,021,650	-				-2.2
3,021,650	-				-0.3
3,021,704	+				+0.1
3,021,742	+				+0.5
3,021,744	+				+1.1
3,021,828	-		TX73_013760	0.21	-2.0
3,022,300	-				+1.3
3,022,332	+				-0.1
3,022,340	-				+0.7
3,022,340	-				+0.9
3,022,364	-				+0.4
3,022,372	-				+0.7
3,022,419	-				-0.2
3,022,474	-				+0.4
3,022,478	+				+0.1
3,022,488	+				+0.3
3,022,493	+				+0.6
3,022,495	+				-0.1
3,022,501	-				-0.0
3,022,501	-				-0.9
3,022,503	-				-0.2
3,022,504	+				+0.8
3,022,522	-				+1.1
3,022,546	+				-0.2
3,022,563	-				+0.3
3,022,586	+				-0.7
3,022,608	+				-0.9
3,022,609	-				-0.5
3,022,623	+				-1.0
3,022,628	+				-0.4
3,022,646	+				+1.6
3,022,667	+				+1.2
3,022,717	-				+1.3
3,022,724	+				+1.0
3,022,748	+		TX73_013765	0.11	+3.1
3,022,756	-		TX73_013765	0.11	-0.2
3,022,761	-		TX73_013765	0.12	-0.4
3,022,772	+		TX73_013765	0.12	-0.2
3,022,772	+		TX73_013765	0.12	-0.1
3,022,772	+		TX73_013765	0.12	+0.3
3,022,772	+		TX73_013765	0.12	+1.1
3,022,772	+		TX73_013765	0.12	+1.3
3,022,775	-		TX73_013765	0.13	+1.4
3,022,780	-		TX73_013765	0.13	+0.8
3,022,780	-		TX73_013765	0.13	-0.0
3,022,780	-		TX73_013765	0.13	-0.8
3,022,796	+		TX73_013765	0.14	+0.3
3,022,862	+		TX73_013765	0.18	-0.5
3,022,867	+		TX73_013765	0.18	-0.1
3,022,867	+		TX73_013765	0.18	+0.3
3,022,870	-		TX73_013765	0.18	-0.0
3,022,873	+		TX73_013765	0.19	-0.3
3,022,875	+		TX73_013765	0.19	-1.1
3,022,875	+		TX73_013765	0.19	+0.7
3,022,883	-		TX73_013765	0.19	+0.7
3,022,883	-		TX73_013765	0.19	+1.2
3,022,904	-		TX73_013765	0.21	+1.8
3,022,935	+		TX73_013765	0.23	-0.0
3,022,943	-		TX73_013765	0.23	+0.6
3,022,944	-		TX73_013765	0.23	-0.2
3,022,944	-		TX73_013765	0.23	+0.3
3,022,946	+		TX73_013765	0.23	-0.3
3,022,946	+		TX73_013765	0.23	+1.3
3,022,952	+		TX73_013765	0.24	+1.5
3,022,965	-		TX73_013765	0.24	-0.2
3,022,995	-		TX73_013765	0.26	+1.5
3,023,003	-		TX73_013765	0.27	+0.1
3,023,024	+		TX73_013765	0.28	+1.5
3,023,028	-		TX73_013765	0.28	+0.8
3,023,028	-		TX73_013765	0.28	-0.8
3,023,060	+		TX73_013765	0.30	+0.2
3,023,060	+		TX73_013765	0.30	+2.1
3,023,060	+		TX73_013765	0.30	+1.0
3,023,068	-		TX73_013765	0.31	-2.1
3,023,070	+		TX73_013765	0.31	-0.9
3,023,075	-		TX73_013765	0.31	+0.9
3,023,087	+		TX73_013765	0.32	+0.2
3,023,112	+		TX73_013765	0.34	+1.2
3,023,146	+		TX73_013765	0.36	+1.0
3,023,154	-		TX73_013765	0.36	-0.0
3,023,168	+		TX73_013765	0.37	+0.2
3,023,169	-		TX73_013765	0.37	+1.3
3,023,186	-		TX73_013765	0.38	-1.3
3,023,211	-		TX73_013765	0.40	-0.0
3,023,238	+		TX73_013765	0.41	-1.0
3,023,256	-		TX73_013765	0.42	-0.9
3,023,277	-		TX73_013765	0.44	+0.8
3,023,294	+		TX73_013765	0.45	+2.4
3,023,327	+		TX73_013765	0.47	+2.5
3,023,335	-		TX73_013765	0.47	+0.0
3,023,354	-		TX73_013765	0.49	-1.5
3,023,357	+		TX73_013765	0.49	+0.2
3,023,364	+		TX73_013765	0.49	-0.6
3,023,367	+		TX73_013765	0.49	+0.2
3,023,372	+		TX73_013765	0.50	+2.3
3,023,390	-		TX73_013765	0.51	-0.3
3,023,421	+		TX73_013765	0.53	+0.2
3,023,437	+		TX73_013765	0.54	+0.7
3,023,456	-		TX73_013765	0.55	+1.4
3,023,460	+		TX73_013765	0.55	+0.9
3,023,461	-		TX73_013765	0.55	-0.5
3,023,465	+		TX73_013765	0.55	-1.8
3,023,480	-		TX73_013765	0.56	+0.8
3,023,539	+		TX73_013765	0.60	+2.1
3,023,544	+		TX73_013765	0.60	-2.1
3,023,547	-		TX73_013765	0.61	-0.7
3,023,547	-		TX73_013765	0.61	+0.5
3,023,574	+		TX73_013765	0.62	+1.8
3,023,635	+		TX73_013765	0.66	+2.3
3,023,643	-		TX73_013765	0.66	-0.4
3,023,660	+		TX73_013765	0.68	-0.5
3,023,673	-		TX73_013765	0.68	+0.6
3,023,687	+		TX73_013765	0.69	+1.0
3,023,696	-		TX73_013765	0.70	-1.9
3,023,718	+		TX73_013765	0.71	+1.3
3,023,719	+		TX73_013765	0.71	-0.0
3,023,720	+		TX73_013765	0.71	+0.9
3,023,720	+		TX73_013765	0.71	+1.9
3,023,730	-		TX73_013765	0.72	+2.1
3,023,793	+		TX73_013765	0.76	+0.0
3,023,800	-		TX73_013765	0.76	+0.1
3,023,803	+		TX73_013765	0.76	-0.9
3,023,823	+		TX73_013765	0.78	+1.8
3,023,865	-		TX73_013765	0.80	-0.2
3,023,867	+		TX73_013765	0.80	+0.8
3,023,869	+		TX73_013765	0.81	+4.6
3,023,870	-		TX73_013765	0.81	-1.7
3,023,875	-		TX73_013765	0.81	-1.0
3,023,896	-		TX73_013765	0.82	-2.1
3,023,911	+		TX73_013765	0.83	+1.2
3,023,917	+		TX73_013765	0.83	-0.5
3,023,978	-		TX73_013765	0.87	+1.9
3,024,021	-		TX73_013765	0.90	-0.6
3,024,045	+				+1.1
3,024,049	+				+1.2
3,024,063	+				+1.1
3,024,065	+				-0.5
3,024,066	+				+1.2
3,024,068	+				+1.7
3,024,074	-				+0.7
3,024,076	-				-0.8
3,024,076	-				-1.4
3,024,077	+				+1.3
3,024,085	-				+0.1
3,024,107	+				+1.1
3,024,108	+				-0.3
3,024,116	-				-1.7
3,024,116	-				+0.4
3,024,151	+				-0.0
3,024,205	-		TX73_013770	0.17	+0.3
3,024,207	+		TX73_013770	0.17	+0.9
3,024,212	+		TX73_013770	0.18	+0.1
3,024,212	+		TX73_013770	0.18	+0.9
3,024,220	-		TX73_013770	0.20	-0.4
3,024,220	-		TX73_013770	0.20	-1.0
3,024,237	-		TX73_013770	0.25	-0.3
3,024,237	-		TX73_013770	0.25	+0.1
3,024,239	+		TX73_013770	0.25	-0.9
3,024,247	-		TX73_013770	0.28	-0.9
3,024,247	-		TX73_013770	0.28	-1.2
3,024,252	-		TX73_013770	0.29	-0.3
3,024,252	-		TX73_013770	0.29	+0.7
3,024,252	-		TX73_013770	0.29	-1.9
3,024,254	+		TX73_013770	0.29	+0.5
3,024,262	-		TX73_013770	0.31	+0.9
3,024,262	-		TX73_013770	0.31	+1.6
3,024,262	-		TX73_013770	0.31	+0.6
3,024,267	-		TX73_013770	0.33	+0.3
3,024,286	+		TX73_013770	0.38	-0.5
3,024,294	-		TX73_013770	0.40	+0.1
3,024,316	+		TX73_013770	0.46	+0.4
3,024,316	+		TX73_013770	0.46	+0.0
3,024,316	+		TX73_013770	0.46	-1.7
3,024,344	+		TX73_013770	0.53	-0.1
3,024,354	+		TX73_013770	0.56	+0.3
3,024,362	-		TX73_013770	0.58	+0.2
3,024,369	+		TX73_013770	0.60	+0.2
3,024,397	-		TX73_013770	0.67	+1.1
3,024,397	-		TX73_013770	0.67	+0.1
3,024,402	-		TX73_013770	0.68	+0.3
3,024,402	-		TX73_013770	0.68	-0.1
3,024,402	-		TX73_013770	0.68	-0.4
3,024,404	+		TX73_013770	0.69	-0.1
3,024,433	-		TX73_013770	0.76	+0.1
3,024,435	+		TX73_013770	0.77	+1.4
3,024,435	+		TX73_013770	0.77	+0.3
3,024,439	-		TX73_013770	0.78	+0.4
3,024,439	-		TX73_013770	0.78	+1.5
3,024,443	-		TX73_013770	0.79	+0.5
3,024,463	-		TX73_013770	0.84	+0.9
3,024,478	+		TX73_013770	0.88	+0.7
3,024,503	-				+1.1
3,024,535	-				+0.1
3,024,538	+				-0.0
3,024,550	-				+0.2
3,024,556	-				-0.6
3,024,556	-				+0.1
3,024,577	-				-0.5
3,024,594	-				+0.0
3,024,624	+				-0.4
3,024,624	-				+0.3
3,024,628	-				-0.9
3,024,645	+				+1.1
3,024,650	+				-0.1
3,024,653	-				-0.5
3,024,658	-				+0.0
3,024,690	-				+0.0
3,024,690	-				-1.7
3,024,690	-				-0.8
3,024,691	+				-0.4
3,024,691	+				-0.5
3,024,697	+				-1.5
3,024,697	+				+0.0
3,024,697	+				+0.0
3,024,699	-				-1.0
3,024,728	+				-0.9
3,024,736	-		TX73_013775	0.10	+1.4
3,024,739	-		TX73_013775	0.10	+1.0
3,024,783	-		TX73_013775	0.13	-0.1
3,024,785	+		TX73_013775	0.14	-1.0
3,024,793	-		TX73_013775	0.14	+0.6
3,024,794	-		TX73_013775	0.14	+0.4
3,024,807	-		TX73_013775	0.15	-0.4
3,024,809	-		TX73_013775	0.15	-0.4
3,024,821	+		TX73_013775	0.16	-0.5
3,024,821	+		TX73_013775	0.16	-0.1
3,024,889	+		TX73_013775	0.21	+0.6
3,024,894	-		TX73_013775	0.21	-1.2
3,024,926	+		TX73_013775	0.24	+0.9
3,024,961	+		TX73_013775	0.26	+0.5
3,024,980	-		TX73_013775	0.28	+0.4
3,024,995	+		TX73_013775	0.29	-0.2
3,025,014	+		TX73_013775	0.30	+0.5
3,025,017	-		TX73_013775	0.30	-0.2
3,025,033	+		TX73_013775	0.31	-0.6
3,025,033	+		TX73_013775	0.31	+0.1
3,025,053	+		TX73_013775	0.33	-0.4
3,025,084	+		TX73_013775	0.35	+0.1
3,025,084	+		TX73_013775	0.35	-0.5
3,025,086	+		TX73_013775	0.35	+0.2
3,025,086	+		TX73_013775	0.35	-0.2
3,025,087	-		TX73_013775	0.35	-0.9
3,025,087	-		TX73_013775	0.35	-0.3
3,025,094	-		TX73_013775	0.36	+0.4
3,025,138	+		TX73_013775	0.39	-0.4
3,025,140	-		TX73_013775	0.39	+1.0
3,025,140	-		TX73_013775	0.39	+0.1
3,025,160	-		TX73_013775	0.41	+0.6
3,025,162	+		TX73_013775	0.41	+0.2
3,025,167	+		TX73_013775	0.41	-0.1
3,025,175	-		TX73_013775	0.42	+0.1
3,025,175	-		TX73_013775	0.42	-0.8
3,025,175	-		TX73_013775	0.42	+0.2