Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_013420

Experiment: MDC_bicarb with butyrate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MDC_bicarb with butyrate
2,947,409	-		TX73_013415	0.16	-1.5
2,947,474	+		TX73_013415	0.21	+0.5
2,947,479	+		TX73_013415	0.22	-2.6
2,947,531	-		TX73_013415	0.26	-0.2
2,947,531	-		TX73_013415	0.26	+1.8
2,947,531	-		TX73_013415	0.26	+2.5
2,947,585	+		TX73_013415	0.31	+2.8
2,947,619	-		TX73_013415	0.34	-1.7
2,947,653	+		TX73_013415	0.37	+1.8
2,947,653	+		TX73_013415	0.37	+2.8
2,947,672	+		TX73_013415	0.38	-0.2
2,947,672	+		TX73_013415	0.38	+1.8
2,947,704	-		TX73_013415	0.41	+2.2
2,947,706	+		TX73_013415	0.41	+2.5
2,947,712	+		TX73_013415	0.42	+2.0
2,947,713	+		TX73_013415	0.42	+1.8
2,947,714	-		TX73_013415	0.42	+0.8
2,947,726	+		TX73_013415	0.43	+0.6
2,947,729	-		TX73_013415	0.43	+0.1
2,947,741	-		TX73_013415	0.44	+0.2
2,947,741	-		TX73_013415	0.44	+0.5
2,947,748	-		TX73_013415	0.45	-0.6
2,947,784	+		TX73_013415	0.48	-0.5
2,947,790	-		TX73_013415	0.48	+1.5
2,947,792	+		TX73_013415	0.49	+1.9
2,947,800	+		TX73_013415	0.49	+0.3
2,947,808	-		TX73_013415	0.50	+1.0
2,947,808	-		TX73_013415	0.50	-0.7
2,947,808	-		TX73_013415	0.50	-0.0
2,947,813	-		TX73_013415	0.50	-0.5
2,947,818	-		TX73_013415	0.51	+1.0
2,947,852	-		TX73_013415	0.54	+2.2
2,947,859	+		TX73_013415	0.54	+3.8
2,947,859	+		TX73_013415	0.54	+2.8
2,947,859	+		TX73_013415	0.54	+0.8
2,947,859	+		TX73_013415	0.54	-0.0
2,947,859	+		TX73_013415	0.54	+2.8
2,947,864	+		TX73_013415	0.55	+1.2
2,947,867	-		TX73_013415	0.55	+0.8
2,947,867	-		TX73_013415	0.55	-1.2
2,947,867	-		TX73_013415	0.55	+0.6
2,947,867	-		TX73_013415	0.55	+0.6
2,947,867	-		TX73_013415	0.55	+1.8
2,947,867	-		TX73_013415	0.55	-0.2
2,947,867	-		TX73_013415	0.55	-0.4
2,947,867	-		TX73_013415	0.55	-0.7
2,947,867	-		TX73_013415	0.55	+0.1
2,947,867	-		TX73_013415	0.55	-0.9
2,947,867	-		TX73_013415	0.55	+0.8
2,947,878	+		TX73_013415	0.56	-0.5
2,947,987	-		TX73_013415	0.65	+0.1
2,947,988	-		TX73_013415	0.65	-0.0
2,948,033	+		TX73_013415	0.69	+3.4
2,948,049	+		TX73_013415	0.70	+1.8
2,948,049	+		TX73_013415	0.70	+1.8
2,948,056	+		TX73_013415	0.71	+0.5
2,948,056	+		TX73_013415	0.71	-0.7
2,948,061	+		TX73_013415	0.71	-1.4
2,948,061	+		TX73_013415	0.71	-0.7
2,948,069	-		TX73_013415	0.72	-0.5
2,948,069	-		TX73_013415	0.72	-0.0
2,948,120	-		TX73_013415	0.76	+1.5
2,948,139	-		TX73_013415	0.78	+1.2
2,948,147	-		TX73_013415	0.79	+0.8
2,948,217	+		TX73_013415	0.85	+1.5
2,948,225	-		TX73_013415	0.85	+1.5
2,948,225	-		TX73_013415	0.85	+0.2
2,948,261	+		TX73_013415	0.88	+2.8
2,948,320	-				-0.5
2,948,320	-				-0.3
2,948,320	-				+1.1
2,948,322	-				+0.3
2,948,375	+				+0.8
2,948,377	+				+0.9
2,948,385	-				-0.5
2,948,446	+				-3.0
2,948,456	+				-1.3
2,948,456	+				-1.5
2,948,456	+				-1.5
2,948,456	-				-1.8
2,948,458	+				-1.5
2,948,464	-				+1.2
2,948,464	-				+0.5
2,948,464	-				-0.2
2,948,464	-				-0.2
2,948,464	-				-2.4
2,948,466	-				-2.4
2,948,466	-				-0.5
2,948,479	+				+0.8
2,948,523	+				-1.6
2,948,529	+				+0.9
2,948,531	-				-1.0
2,948,535	+				-1.2
2,948,543	-				+1.0
2,948,547	+				+0.5
2,948,547	-				+1.5
2,948,574	+		TX73_013420	0.12	-1.0
2,948,592	-		TX73_013420	0.13	-0.0
2,948,744	+		TX73_013420	0.23	-1.7
2,948,769	-		TX73_013420	0.25	+0.5
2,948,774	-		TX73_013420	0.26	-0.2
2,948,794	+		TX73_013420	0.27	+0.8
2,948,824	+		TX73_013420	0.29	-2.3
2,948,911	+		TX73_013420	0.35	-0.5
2,948,911	+		TX73_013420	0.35	-1.0
2,948,922	+		TX73_013420	0.36	-2.5
2,948,984	+		TX73_013420	0.40	-1.7
2,948,997	-		TX73_013420	0.41	-0.4
2,949,014	-		TX73_013420	0.42	-1.0
2,949,050	+		TX73_013420	0.45	-1.0
2,949,050	+		TX73_013420	0.45	-0.8
2,949,084	+		TX73_013420	0.47	-1.5
2,949,102	-		TX73_013420	0.48	-0.8
2,949,102	-		TX73_013420	0.48	+1.2
2,949,103	-		TX73_013420	0.48	-1.5
2,949,146	+		TX73_013420	0.51	+0.1
2,949,159	-		TX73_013420	0.52	-1.5
2,949,172	+		TX73_013420	0.53	+0.2
2,949,176	-		TX73_013420	0.53	-1.2
2,949,176	-		TX73_013420	0.53	-1.3
2,949,179	+		TX73_013420	0.54	-1.2
2,949,182	+		TX73_013420	0.54	-0.5
2,949,192	-		TX73_013420	0.55	-0.5
2,949,211	+		TX73_013420	0.56	+0.8
2,949,216	+		TX73_013420	0.56	-2.5
2,949,216	+		TX73_013420	0.56	-0.8
2,949,224	-		TX73_013420	0.57	-0.7
2,949,224	-		TX73_013420	0.57	-0.5
2,949,224	-		TX73_013420	0.57	+0.1
2,949,233	+		TX73_013420	0.57	+0.2
2,949,241	-		TX73_013420	0.58	-0.0
2,949,259	+		TX73_013420	0.59	+0.2
2,949,278	-		TX73_013420	0.60	-1.2
2,949,280	+		TX73_013420	0.61	+0.2
2,949,283	-		TX73_013420	0.61	+0.5
2,949,283	-		TX73_013420	0.61	+1.2
2,949,288	-		TX73_013420	0.61	+0.5
2,949,317	-		TX73_013420	0.63	-1.9
2,949,330	-		TX73_013420	0.64	-0.5
2,949,346	+		TX73_013420	0.65	-0.0
2,949,354	-		TX73_013420	0.66	-1.1
2,949,365	-		TX73_013420	0.67	+1.2
2,949,378	+		TX73_013420	0.67	-0.9
2,949,396	-		TX73_013420	0.69	-0.0
2,949,468	+		TX73_013420	0.74	-1.6
2,949,476	-		TX73_013420	0.74	-0.2
2,949,500	-		TX73_013420	0.76	+0.2
2,949,504	-		TX73_013420	0.76	+0.2
2,949,515	+		TX73_013420	0.77	-1.2
2,949,516	+		TX73_013420	0.77	-0.0
2,949,529	-		TX73_013420	0.78	-0.4
2,949,534	-		TX73_013420	0.78	-1.5
2,949,537	+		TX73_013420	0.78	-2.1
2,949,620	+		TX73_013420	0.84	-1.5
2,949,624	+		TX73_013420	0.84	-0.0
2,949,628	-		TX73_013420	0.85	-1.1
2,949,643	+		TX73_013420	0.86	-1.8
2,949,678	+		TX73_013420	0.88	-1.0
2,949,680	+		TX73_013420	0.88	+0.2
2,949,681	-		TX73_013420	0.88	-0.9
2,949,688	-		TX73_013420	0.89	+1.5
2,949,688	-		TX73_013420	0.89	+0.8
2,949,695	-		TX73_013420	0.89	-0.4
2,949,700	-		TX73_013420	0.90	+1.8
2,949,702	+		TX73_013420	0.90	-0.9
2,949,710	-				-0.7
2,949,723	+				-0.9
2,949,757	-				-0.4
2,949,772	+				-1.5
2,949,784	+				-2.4
2,949,792	-				-1.3
2,949,819	+				+0.2
2,949,821	-				-0.5
2,949,877	-				+0.3
2,949,885	-				-0.3
2,949,886	+				-0.1
2,949,892	+				-0.2
2,949,972	+				+0.4
2,949,985	-				-0.2
2,949,985	-				+0.3
2,949,986	-				-0.1
2,950,035	-				-0.0
2,950,035	-				-0.1
2,950,053	-				+0.7
2,950,077	+				-0.5
2,950,117	+				+1.0
2,950,135	-				+1.2
2,950,150	-				+1.0
2,950,191	+				-0.4
2,950,204	-				+0.1
2,950,259	+		TX73_013425	0.11	+0.8
2,950,262	+		TX73_013425	0.11	+2.6
2,950,320	-		TX73_013425	0.14	-1.1
2,950,372	+		TX73_013425	0.16	-0.1
2,950,372	+		TX73_013425	0.16	+2.1
2,950,633	+		TX73_013425	0.27	+0.8
2,950,765	+		TX73_013425	0.33	+0.9
2,950,841	+		TX73_013425	0.36	+0.1