Experiment: MDC_bicarb with butyrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_002060 and TX73_002065 are separated by 186 nucleotides TX73_002065 and TX73_002070 are separated by 153 nucleotides
TX73_002060: TX73_002060 - 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN, at 435,045 to 436,244
_002060
TX73_002065: TX73_002065 - invasion associated locus B family protein, at 436,431 to 437,006
_002065
TX73_002070: TX73_002070 - SDR family oxidoreductase, at 437,160 to 437,996
_002070
Position (kb) 436
437
438 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 435.489 kb on + strand, within TX73_002060 at 435.526 kb on + strand, within TX73_002060 at 435.528 kb on - strand, within TX73_002060 at 435.533 kb on + strand, within TX73_002060 at 435.536 kb on - strand, within TX73_002060 at 435.544 kb on + strand, within TX73_002060 at 435.641 kb on - strand, within TX73_002060 at 435.672 kb on + strand, within TX73_002060 at 435.695 kb on - strand, within TX73_002060 at 435.733 kb on + strand, within TX73_002060 at 435.733 kb on + strand, within TX73_002060 at 435.741 kb on - strand, within TX73_002060 at 435.741 kb on - strand, within TX73_002060 at 435.741 kb on - strand, within TX73_002060 at 435.753 kb on + strand, within TX73_002060 at 435.761 kb on + strand, within TX73_002060 at 435.763 kb on + strand, within TX73_002060 at 435.785 kb on + strand, within TX73_002060 at 435.787 kb on + strand, within TX73_002060 at 435.808 kb on + strand, within TX73_002060 at 435.810 kb on + strand, within TX73_002060 at 435.818 kb on - strand, within TX73_002060 at 435.830 kb on + strand, within TX73_002060 at 435.833 kb on - strand, within TX73_002060 at 435.838 kb on - strand, within TX73_002060 at 435.867 kb on - strand, within TX73_002060 at 435.876 kb on - strand, within TX73_002060 at 435.902 kb on - strand, within TX73_002060 at 435.949 kb on + strand, within TX73_002060 at 435.965 kb on - strand, within TX73_002060 at 435.979 kb on - strand, within TX73_002060 at 435.985 kb on + strand, within TX73_002060 at 435.985 kb on + strand, within TX73_002060 at 435.985 kb on + strand, within TX73_002060 at 435.993 kb on - strand, within TX73_002060 at 435.993 kb on - strand, within TX73_002060 at 436.055 kb on - strand, within TX73_002060 at 436.064 kb on + strand, within TX73_002060 at 436.068 kb on + strand, within TX73_002060 at 436.072 kb on - strand, within TX73_002060 at 436.072 kb on - strand, within TX73_002060 at 436.075 kb on + strand, within TX73_002060 at 436.078 kb on - strand, within TX73_002060 at 436.080 kb on + strand, within TX73_002060 at 436.080 kb on + strand, within TX73_002060 at 436.083 kb on - strand, within TX73_002060 at 436.088 kb on - strand, within TX73_002060 at 436.095 kb on + strand, within TX73_002060 at 436.096 kb on + strand, within TX73_002060 at 436.106 kb on + strand, within TX73_002060 at 436.116 kb on - strand, within TX73_002060 at 436.117 kb on + strand, within TX73_002060 at 436.123 kb on - strand, within TX73_002060 at 436.126 kb on + strand at 436.155 kb on + strand at 436.182 kb on - strand at 436.182 kb on - strand at 436.184 kb on + strand at 436.187 kb on + strand at 436.187 kb on + strand at 436.187 kb on + strand at 436.195 kb on - strand at 436.220 kb on + strand at 436.220 kb on + strand at 436.220 kb on + strand at 436.221 kb on + strand at 436.228 kb on - strand at 436.229 kb on - strand at 436.229 kb on - strand at 436.229 kb on - strand at 436.259 kb on - strand at 436.259 kb on - strand at 436.284 kb on + strand at 436.284 kb on + strand at 436.287 kb on + strand at 436.287 kb on + strand at 436.297 kb on + strand at 436.300 kb on - strand at 436.320 kb on + strand at 436.320 kb on + strand at 436.323 kb on + strand at 436.323 kb on - strand at 436.350 kb on - strand at 436.359 kb on + strand at 436.373 kb on + strand at 436.375 kb on - strand at 436.377 kb on + strand at 436.403 kb on - strand at 436.411 kb on - strand at 436.435 kb on - strand at 436.435 kb on - strand at 436.438 kb on + strand at 436.438 kb on + strand at 436.438 kb on + strand at 436.440 kb on - strand at 436.446 kb on - strand at 436.451 kb on - strand at 436.451 kb on - strand at 436.478 kb on - strand at 436.493 kb on + strand, within TX73_002065 at 436.493 kb on + strand, within TX73_002065 at 436.498 kb on + strand, within TX73_002065 at 436.506 kb on - strand, within TX73_002065 at 436.532 kb on - strand, within TX73_002065 at 436.546 kb on - strand, within TX73_002065 at 436.558 kb on + strand, within TX73_002065 at 436.571 kb on - strand, within TX73_002065 at 436.571 kb on - strand, within TX73_002065 at 436.614 kb on + strand, within TX73_002065 at 436.614 kb on + strand, within TX73_002065 at 436.656 kb on + strand, within TX73_002065 at 436.675 kb on - strand, within TX73_002065 at 436.689 kb on + strand, within TX73_002065 at 436.690 kb on + strand, within TX73_002065 at 436.690 kb on + strand, within TX73_002065 at 436.690 kb on + strand, within TX73_002065 at 436.709 kb on + strand, within TX73_002065 at 436.711 kb on + strand, within TX73_002065 at 436.721 kb on + strand, within TX73_002065 at 436.726 kb on + strand, within TX73_002065 at 436.743 kb on + strand, within TX73_002065 at 436.751 kb on - strand, within TX73_002065 at 436.761 kb on + strand, within TX73_002065 at 436.769 kb on + strand, within TX73_002065 at 436.769 kb on - strand, within TX73_002065 at 436.789 kb on + strand, within TX73_002065 at 436.789 kb on + strand, within TX73_002065 at 436.797 kb on - strand, within TX73_002065 at 436.797 kb on - strand, within TX73_002065 at 436.797 kb on - strand, within TX73_002065 at 436.799 kb on + strand, within TX73_002065 at 436.799 kb on + strand, within TX73_002065 at 436.807 kb on - strand, within TX73_002065 at 436.819 kb on - strand, within TX73_002065 at 436.819 kb on - strand, within TX73_002065 at 436.832 kb on + strand, within TX73_002065 at 436.834 kb on + strand, within TX73_002065 at 436.840 kb on - strand, within TX73_002065 at 436.840 kb on - strand, within TX73_002065 at 436.840 kb on - strand, within TX73_002065 at 436.841 kb on + strand, within TX73_002065 at 436.849 kb on + strand, within TX73_002065 at 436.857 kb on - strand, within TX73_002065 at 436.858 kb on + strand, within TX73_002065 at 436.874 kb on + strand, within TX73_002065 at 436.925 kb on - strand, within TX73_002065 at 436.925 kb on - strand, within TX73_002065 at 436.942 kb on - strand, within TX73_002065 at 436.942 kb on - strand, within TX73_002065 at 436.950 kb on - strand at 436.993 kb on + strand at 437.021 kb on - strand at 437.021 kb on - strand at 437.043 kb on - strand at 437.061 kb on + strand at 437.070 kb on + strand at 437.079 kb on + strand at 437.103 kb on + strand at 437.114 kb on + strand at 437.114 kb on + strand at 437.114 kb on + strand at 437.124 kb on + strand at 437.124 kb on + strand at 437.127 kb on - strand at 437.181 kb on - strand at 437.191 kb on + strand at 437.191 kb on + strand at 437.194 kb on - strand at 437.199 kb on - strand at 437.199 kb on - strand at 437.199 kb on - strand at 437.199 kb on - strand at 437.214 kb on - strand at 437.228 kb on + strand at 437.228 kb on - strand at 437.246 kb on - strand, within TX73_002070 at 437.251 kb on + strand, within TX73_002070 at 437.251 kb on - strand, within TX73_002070 at 437.251 kb on - strand, within TX73_002070 at 437.264 kb on - strand, within TX73_002070 at 437.284 kb on + strand, within TX73_002070 at 437.294 kb on + strand, within TX73_002070 at 437.294 kb on + strand, within TX73_002070 at 437.309 kb on - strand, within TX73_002070 at 437.313 kb on + strand, within TX73_002070 at 437.342 kb on + strand, within TX73_002070 at 437.362 kb on - strand, within TX73_002070 at 437.392 kb on + strand, within TX73_002070 at 437.392 kb on + strand, within TX73_002070 at 437.400 kb on - strand, within TX73_002070 at 437.400 kb on - strand, within TX73_002070 at 437.400 kb on - strand, within TX73_002070 at 437.465 kb on + strand, within TX73_002070 at 437.477 kb on - strand, within TX73_002070 at 437.484 kb on + strand, within TX73_002070 at 437.504 kb on - strand, within TX73_002070 at 437.509 kb on + strand, within TX73_002070 at 437.522 kb on - strand, within TX73_002070 at 437.527 kb on - strand, within TX73_002070 at 437.538 kb on + strand, within TX73_002070 at 437.539 kb on - strand, within TX73_002070 at 437.539 kb on - strand, within TX73_002070 at 437.569 kb on + strand, within TX73_002070 at 437.572 kb on - strand, within TX73_002070 at 437.572 kb on - strand, within TX73_002070 at 437.579 kb on - strand, within TX73_002070 at 437.583 kb on + strand, within TX73_002070 at 437.610 kb on - strand, within TX73_002070 at 437.610 kb on - strand, within TX73_002070 at 437.624 kb on + strand, within TX73_002070 at 437.626 kb on + strand, within TX73_002070 at 437.626 kb on + strand, within TX73_002070 at 437.633 kb on + strand, within TX73_002070 at 437.633 kb on + strand, within TX73_002070 at 437.633 kb on + strand, within TX73_002070 at 437.633 kb on + strand, within TX73_002070 at 437.633 kb on + strand, within TX73_002070 at 437.633 kb on + strand, within TX73_002070 at 437.641 kb on - strand, within TX73_002070 at 437.641 kb on - strand, within TX73_002070 at 437.641 kb on - strand, within TX73_002070 at 437.641 kb on - strand, within TX73_002070 at 437.641 kb on - strand, within TX73_002070 at 437.651 kb on - strand, within TX73_002070 at 437.651 kb on - strand, within TX73_002070 at 437.707 kb on - strand, within TX73_002070 at 437.722 kb on + strand, within TX73_002070 at 437.724 kb on + strand, within TX73_002070 at 437.729 kb on + strand, within TX73_002070 at 437.729 kb on + strand, within TX73_002070 at 437.760 kb on - strand, within TX73_002070 at 437.760 kb on - strand, within TX73_002070 at 437.812 kb on + strand, within TX73_002070 at 437.821 kb on + strand, within TX73_002070 at 437.853 kb on + strand, within TX73_002070 at 437.893 kb on - strand, within TX73_002070 at 437.903 kb on + strand, within TX73_002070 at 437.936 kb on + strand at 437.944 kb on - strand at 437.955 kb on + strand at 437.981 kb on + strand at 437.994 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MDC_bicarb with butyrate remove 435,489 + TX73_002060 0.37 +0.4 435,526 + TX73_002060 0.40 -0.2 435,528 - TX73_002060 0.40 +0.4 435,533 + TX73_002060 0.41 -0.6 435,536 - TX73_002060 0.41 -0.7 435,544 + TX73_002060 0.42 +0.3 435,641 - TX73_002060 0.50 +0.7 435,672 + TX73_002060 0.52 +0.8 435,695 - TX73_002060 0.54 +0.9 435,733 + TX73_002060 0.57 +0.1 435,733 + TX73_002060 0.57 +0.7 435,741 - TX73_002060 0.58 -0.6 435,741 - TX73_002060 0.58 +0.3 435,741 - TX73_002060 0.58 -0.4 435,753 + TX73_002060 0.59 +0.1 435,761 + TX73_002060 0.60 -0.0 435,763 + TX73_002060 0.60 +1.4 435,785 + TX73_002060 0.62 +0.7 435,787 + TX73_002060 0.62 +0.2 435,808 + TX73_002060 0.64 +0.4 435,810 + TX73_002060 0.64 +0.5 435,818 - TX73_002060 0.64 +0.6 435,830 + TX73_002060 0.65 +0.2 435,833 - TX73_002060 0.66 +0.7 435,838 - TX73_002060 0.66 -0.5 435,867 - TX73_002060 0.69 +1.1 435,876 - TX73_002060 0.69 +0.6 435,902 - TX73_002060 0.71 +0.6 435,949 + TX73_002060 0.75 +0.9 435,965 - TX73_002060 0.77 -0.1 435,979 - TX73_002060 0.78 +0.3 435,985 + TX73_002060 0.78 +1.6 435,985 + TX73_002060 0.78 +0.7 435,985 + TX73_002060 0.78 +0.3 435,993 - TX73_002060 0.79 +0.3 435,993 - TX73_002060 0.79 +0.0 436,055 - TX73_002060 0.84 +0.7 436,064 + TX73_002060 0.85 +0.5 436,068 + TX73_002060 0.85 +1.2 436,072 - TX73_002060 0.86 +0.0 436,072 - TX73_002060 0.86 +0.6 436,075 + TX73_002060 0.86 +1.2 436,078 - TX73_002060 0.86 +0.8 436,080 + TX73_002060 0.86 +0.6 436,080 + TX73_002060 0.86 +1.2 436,083 - TX73_002060 0.86 +0.4 436,088 - TX73_002060 0.87 +1.3 436,095 + TX73_002060 0.88 +0.8 436,096 + TX73_002060 0.88 -0.1 436,106 + TX73_002060 0.88 -0.3 436,116 - TX73_002060 0.89 +0.6 436,117 + TX73_002060 0.89 -0.3 436,123 - TX73_002060 0.90 +0.6 436,126 + -0.2 436,155 + +0.3 436,182 - +0.4 436,182 - -0.2 436,184 + +1.1 436,187 + +0.8 436,187 + -0.2 436,187 + +0.8 436,195 - +0.8 436,220 + +0.6 436,220 + -0.0 436,220 + -1.1 436,221 + -0.1 436,228 - +0.3 436,229 - +0.1 436,229 - -0.1 436,229 - -0.5 436,259 - +0.3 436,259 - -0.1 436,284 + -0.1 436,284 + +0.0 436,287 + -0.4 436,287 + +0.1 436,297 + +0.7 436,300 - -0.6 436,320 + -0.3 436,320 + +0.1 436,323 + -0.5 436,323 - +0.0 436,350 - +0.6 436,359 + +0.7 436,373 + +0.6 436,375 - +0.4 436,377 + +0.3 436,403 - -1.0 436,411 - +0.3 436,435 - -0.6 436,435 - -0.3 436,438 + -0.2 436,438 + -0.9 436,438 + +0.1 436,440 - +0.5 436,446 - +0.4 436,451 - -0.1 436,451 - -1.3 436,478 - +1.0 436,493 + TX73_002065 0.11 -0.1 436,493 + TX73_002065 0.11 -0.4 436,498 + TX73_002065 0.12 +0.2 436,506 - TX73_002065 0.13 -0.2 436,532 - TX73_002065 0.18 -0.1 436,546 - TX73_002065 0.20 -0.3 436,558 + TX73_002065 0.22 -0.2 436,571 - TX73_002065 0.24 -0.1 436,571 - TX73_002065 0.24 -0.4 436,614 + TX73_002065 0.32 -1.1 436,614 + TX73_002065 0.32 -0.2 436,656 + TX73_002065 0.39 +1.1 436,675 - TX73_002065 0.42 +0.3 436,689 + TX73_002065 0.45 +0.3 436,690 + TX73_002065 0.45 -0.5 436,690 + TX73_002065 0.45 -0.0 436,690 + TX73_002065 0.45 +1.0 436,709 + TX73_002065 0.48 -0.3 436,711 + TX73_002065 0.49 -0.2 436,721 + TX73_002065 0.50 -0.3 436,726 + TX73_002065 0.51 +0.3 436,743 + TX73_002065 0.54 +0.8 436,751 - TX73_002065 0.56 -0.9 436,761 + TX73_002065 0.57 +0.4 436,769 + TX73_002065 0.59 -0.5 436,769 - TX73_002065 0.59 -0.0 436,789 + TX73_002065 0.62 +0.2 436,789 + TX73_002065 0.62 +0.7 436,797 - TX73_002065 0.64 +0.2 436,797 - TX73_002065 0.64 +1.0 436,797 - TX73_002065 0.64 -0.1 436,799 + TX73_002065 0.64 -0.4 436,799 + TX73_002065 0.64 +0.6 436,807 - TX73_002065 0.65 +0.8 436,819 - TX73_002065 0.67 -0.8 436,819 - TX73_002065 0.67 +0.5 436,832 + TX73_002065 0.70 +0.3 436,834 + TX73_002065 0.70 -0.0 436,840 - TX73_002065 0.71 +0.1 436,840 - TX73_002065 0.71 -0.4 436,840 - TX73_002065 0.71 +0.4 436,841 + TX73_002065 0.71 +0.1 436,849 + TX73_002065 0.73 +0.3 436,857 - TX73_002065 0.74 +0.1 436,858 + TX73_002065 0.74 +0.4 436,874 + TX73_002065 0.77 +0.5 436,925 - TX73_002065 0.86 +0.6 436,925 - TX73_002065 0.86 -0.9 436,942 - TX73_002065 0.89 +0.4 436,942 - TX73_002065 0.89 +0.4 436,950 - -1.4 436,993 + -0.5 437,021 - -0.1 437,021 - -0.0 437,043 - +0.8 437,061 + -0.2 437,070 + -0.1 437,079 + -0.3 437,103 + +0.1 437,114 + +0.3 437,114 + -0.4 437,114 + -0.6 437,124 + +0.1 437,124 + +0.1 437,127 - -0.3 437,181 - +0.7 437,191 + -0.6 437,191 + +0.2 437,194 - -0.4 437,199 - +0.2 437,199 - -0.4 437,199 - -0.6 437,199 - +0.5 437,214 - -0.2 437,228 + +0.4 437,228 - +0.3 437,246 - TX73_002070 0.10 +0.2 437,251 + TX73_002070 0.11 -0.1 437,251 - TX73_002070 0.11 -0.7 437,251 - TX73_002070 0.11 -0.1 437,264 - TX73_002070 0.12 +0.5 437,284 + TX73_002070 0.15 -0.2 437,294 + TX73_002070 0.16 +0.2 437,294 + TX73_002070 0.16 -0.0 437,309 - TX73_002070 0.18 -0.3 437,313 + TX73_002070 0.18 +0.4 437,342 + TX73_002070 0.22 +0.6 437,362 - TX73_002070 0.24 +0.8 437,392 + TX73_002070 0.28 -0.8 437,392 + TX73_002070 0.28 -1.0 437,400 - TX73_002070 0.29 +0.1 437,400 - TX73_002070 0.29 +0.0 437,400 - TX73_002070 0.29 -0.7 437,465 + TX73_002070 0.36 -0.8 437,477 - TX73_002070 0.38 -1.2 437,484 + TX73_002070 0.39 -0.2 437,504 - TX73_002070 0.41 +0.2 437,509 + TX73_002070 0.42 +0.6 437,522 - TX73_002070 0.43 -0.3 437,527 - TX73_002070 0.44 +0.7 437,538 + TX73_002070 0.45 +0.3 437,539 - TX73_002070 0.45 -1.7 437,539 - TX73_002070 0.45 +0.1 437,569 + TX73_002070 0.49 -0.6 437,572 - TX73_002070 0.49 -0.9 437,572 - TX73_002070 0.49 +0.5 437,579 - TX73_002070 0.50 -1.6 437,583 + TX73_002070 0.51 -0.0 437,610 - TX73_002070 0.54 -2.9 437,610 - TX73_002070 0.54 +0.3 437,624 + TX73_002070 0.55 +0.7 437,626 + TX73_002070 0.56 -0.4 437,626 + TX73_002070 0.56 +0.6 437,633 + TX73_002070 0.57 -0.3 437,633 + TX73_002070 0.57 -0.1 437,633 + TX73_002070 0.57 -0.1 437,633 + TX73_002070 0.57 -0.0 437,633 + TX73_002070 0.57 -0.6 437,633 + TX73_002070 0.57 +0.5 437,641 - TX73_002070 0.57 +0.2 437,641 - TX73_002070 0.57 +0.6 437,641 - TX73_002070 0.57 +0.8 437,641 - TX73_002070 0.57 -0.1 437,641 - TX73_002070 0.57 -0.2 437,651 - TX73_002070 0.59 +0.3 437,651 - TX73_002070 0.59 +0.5 437,707 - TX73_002070 0.65 +0.0 437,722 + TX73_002070 0.67 +0.1 437,724 + TX73_002070 0.67 +1.0 437,729 + TX73_002070 0.68 +0.7 437,729 + TX73_002070 0.68 +0.4 437,760 - TX73_002070 0.72 +0.5 437,760 - TX73_002070 0.72 +0.4 437,812 + TX73_002070 0.78 +0.5 437,821 + TX73_002070 0.79 +0.3 437,853 + TX73_002070 0.83 -1.8 437,893 - TX73_002070 0.88 +0.4 437,903 + TX73_002070 0.89 -0.1 437,936 + -0.2 437,944 - +0.4 437,955 + -1.4 437,981 + +0.3 437,994 - -0.0
Or see this region's nucleotide sequence