Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_001780

Experiment: PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_001770 and TX73_001775 are separated by 51 nucleotidesTX73_001775 and TX73_001780 are separated by 22 nucleotidesTX73_001780 and TX73_001785 are separated by 115 nucleotides TX73_001770: TX73_001770 - bifunctional helix-turn-helix domain-containing protein/methylated-DNA--[protein]-cysteine S-methyltransferase, at 369,040 to 369,936 _001770 TX73_001775: TX73_001775 - DUF2244 domain-containing protein, at 369,988 to 370,503 _001775 TX73_001780: TX73_001780 - endonuclease III, at 370,526 to 371,311 _001780 TX73_001785: TX73_001785 - peptidase S10, at 371,427 to 372,992 _001785 Position (kb) 370 371 372Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 369.528 kb on + strand, within TX73_001770at 369.536 kb on + strand, within TX73_001770at 369.546 kb on + strand, within TX73_001770at 369.546 kb on + strand, within TX73_001770at 369.554 kb on - strand, within TX73_001770at 369.586 kb on - strand, within TX73_001770at 369.591 kb on + strand, within TX73_001770at 369.599 kb on + strand, within TX73_001770at 369.599 kb on - strand, within TX73_001770at 369.607 kb on - strand, within TX73_001770at 369.617 kb on - strand, within TX73_001770at 369.626 kb on + strand, within TX73_001770at 369.626 kb on + strand, within TX73_001770at 369.626 kb on + strand, within TX73_001770at 369.626 kb on + strand, within TX73_001770at 369.634 kb on - strand, within TX73_001770at 369.634 kb on - strand, within TX73_001770at 369.634 kb on - strand, within TX73_001770at 369.634 kb on - strand, within TX73_001770at 369.634 kb on - strand, within TX73_001770at 369.636 kb on + strand, within TX73_001770at 369.636 kb on + strand, within TX73_001770at 369.636 kb on + strand, within TX73_001770at 369.643 kb on + strand, within TX73_001770at 369.644 kb on - strand, within TX73_001770at 369.646 kb on - strand, within TX73_001770at 369.649 kb on - strand, within TX73_001770at 369.653 kb on + strand, within TX73_001770at 369.656 kb on - strand, within TX73_001770at 369.686 kb on + strand, within TX73_001770at 369.735 kb on + strand, within TX73_001770at 369.759 kb on - strand, within TX73_001770at 369.760 kb on + strand, within TX73_001770at 369.774 kb on + strand, within TX73_001770at 369.776 kb on - strand, within TX73_001770at 369.862 kb on + strandat 369.870 kb on - strandat 369.870 kb on - strandat 369.928 kb on + strandat 369.999 kb on + strandat 370.003 kb on - strandat 370.003 kb on - strandat 370.005 kb on - strandat 370.019 kb on + strandat 370.027 kb on - strandat 370.098 kb on + strand, within TX73_001775at 370.103 kb on + strand, within TX73_001775at 370.111 kb on - strand, within TX73_001775at 370.112 kb on + strand, within TX73_001775at 370.117 kb on - strand, within TX73_001775at 370.120 kb on - strand, within TX73_001775at 370.120 kb on - strand, within TX73_001775at 370.120 kb on - strand, within TX73_001775at 370.120 kb on - strand, within TX73_001775at 370.120 kb on - strand, within TX73_001775at 370.120 kb on - strand, within TX73_001775at 370.120 kb on - strand, within TX73_001775at 370.133 kb on + strand, within TX73_001775at 370.135 kb on - strand, within TX73_001775at 370.156 kb on - strand, within TX73_001775at 370.158 kb on + strand, within TX73_001775at 370.169 kb on + strand, within TX73_001775at 370.172 kb on - strand, within TX73_001775at 370.174 kb on + strand, within TX73_001775at 370.179 kb on + strand, within TX73_001775at 370.187 kb on - strand, within TX73_001775at 370.270 kb on + strand, within TX73_001775at 370.278 kb on - strand, within TX73_001775at 370.278 kb on - strand, within TX73_001775at 370.281 kb on + strand, within TX73_001775at 370.281 kb on + strand, within TX73_001775at 370.289 kb on - strand, within TX73_001775at 370.289 kb on - strand, within TX73_001775at 370.289 kb on - strand, within TX73_001775at 370.289 kb on - strand, within TX73_001775at 370.296 kb on - strand, within TX73_001775at 370.308 kb on - strand, within TX73_001775at 370.387 kb on + strand, within TX73_001775at 370.400 kb on - strand, within TX73_001775at 370.408 kb on - strand, within TX73_001775at 370.445 kb on - strand, within TX73_001775at 370.477 kb on - strandat 370.477 kb on - strandat 370.536 kb on + strandat 370.562 kb on + strandat 370.569 kb on + strandat 370.584 kb on - strandat 370.638 kb on + strand, within TX73_001780at 370.672 kb on + strand, within TX73_001780at 370.682 kb on - strand, within TX73_001780at 370.691 kb on - strand, within TX73_001780at 370.728 kb on - strand, within TX73_001780at 370.733 kb on - strand, within TX73_001780at 370.752 kb on + strand, within TX73_001780at 370.753 kb on + strand, within TX73_001780at 370.760 kb on - strand, within TX73_001780at 370.787 kb on - strand, within TX73_001780at 370.844 kb on + strand, within TX73_001780at 370.877 kb on + strand, within TX73_001780at 370.900 kb on + strand, within TX73_001780at 370.908 kb on - strand, within TX73_001780at 370.908 kb on - strand, within TX73_001780at 370.938 kb on - strand, within TX73_001780at 370.980 kb on - strand, within TX73_001780at 370.980 kb on - strand, within TX73_001780at 370.984 kb on + strand, within TX73_001780at 371.014 kb on - strand, within TX73_001780at 371.017 kb on + strand, within TX73_001780at 371.115 kb on + strand, within TX73_001780at 371.121 kb on + strand, within TX73_001780at 371.121 kb on + strand, within TX73_001780at 371.123 kb on - strand, within TX73_001780at 371.145 kb on + strand, within TX73_001780at 371.163 kb on - strand, within TX73_001780at 371.208 kb on + strand, within TX73_001780at 371.211 kb on - strand, within TX73_001780at 371.211 kb on - strand, within TX73_001780at 371.235 kb on - strandat 371.243 kb on - strandat 371.261 kb on + strandat 371.267 kb on - strandat 371.267 kb on - strandat 371.276 kb on + strandat 371.336 kb on - strandat 371.367 kb on + strandat 371.380 kb on - strandat 371.428 kb on + strandat 371.490 kb on - strandat 371.490 kb on - strandat 371.490 kb on - strandat 371.490 kb on - strandat 371.569 kb on - strandat 371.605 kb on + strand, within TX73_001785at 371.624 kb on + strand, within TX73_001785at 371.624 kb on + strand, within TX73_001785at 371.630 kb on + strand, within TX73_001785at 371.630 kb on + strand, within TX73_001785at 371.630 kb on + strand, within TX73_001785at 371.630 kb on + strand, within TX73_001785at 371.632 kb on - strand, within TX73_001785at 371.633 kb on - strand, within TX73_001785at 371.635 kb on + strand, within TX73_001785at 371.746 kb on + strand, within TX73_001785at 371.754 kb on - strand, within TX73_001785at 371.766 kb on + strand, within TX73_001785at 371.769 kb on - strand, within TX73_001785at 371.785 kb on - strand, within TX73_001785at 371.844 kb on - strand, within TX73_001785at 371.860 kb on + strand, within TX73_001785at 371.868 kb on - strand, within TX73_001785at 371.875 kb on - strand, within TX73_001785at 371.883 kb on - strand, within TX73_001785at 371.883 kb on - strand, within TX73_001785at 371.943 kb on - strand, within TX73_001785at 371.945 kb on - strand, within TX73_001785at 371.972 kb on + strand, within TX73_001785at 371.978 kb on - strand, within TX73_001785at 371.987 kb on + strand, within TX73_001785at 372.037 kb on + strand, within TX73_001785at 372.037 kb on + strand, within TX73_001785at 372.037 kb on + strand, within TX73_001785at 372.045 kb on - strand, within TX73_001785at 372.076 kb on + strand, within TX73_001785at 372.106 kb on + strand, within TX73_001785at 372.178 kb on - strand, within TX73_001785at 372.203 kb on - strand, within TX73_001785at 372.216 kb on + strand, within TX73_001785at 372.254 kb on - strand, within TX73_001785at 372.286 kb on + strand, within TX73_001785at 372.301 kb on + strand, within TX73_001785at 372.301 kb on + strand, within TX73_001785

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Per-strain Table

Position Strand Gene LocusTag Fraction PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM
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369,528 + TX73_001770 0.54 -0.7
369,536 + TX73_001770 0.55 +0.9
369,546 + TX73_001770 0.56 -0.5
369,546 + TX73_001770 0.56 +0.5
369,554 - TX73_001770 0.57 -0.1
369,586 - TX73_001770 0.61 -0.5
369,591 + TX73_001770 0.61 +0.4
369,599 + TX73_001770 0.62 -0.6
369,599 - TX73_001770 0.62 +0.0
369,607 - TX73_001770 0.63 +0.2
369,617 - TX73_001770 0.64 +0.2
369,626 + TX73_001770 0.65 -0.3
369,626 + TX73_001770 0.65 -1.4
369,626 + TX73_001770 0.65 -2.0
369,626 + TX73_001770 0.65 +0.1
369,634 - TX73_001770 0.66 +0.3
369,634 - TX73_001770 0.66 -0.7
369,634 - TX73_001770 0.66 -0.5
369,634 - TX73_001770 0.66 -0.2
369,634 - TX73_001770 0.66 -0.8
369,636 + TX73_001770 0.66 -0.7
369,636 + TX73_001770 0.66 +0.4
369,636 + TX73_001770 0.66 -0.3
369,643 + TX73_001770 0.67 -0.9
369,644 - TX73_001770 0.67 -0.4
369,646 - TX73_001770 0.68 +0.2
369,649 - TX73_001770 0.68 -0.7
369,653 + TX73_001770 0.68 -0.3
369,656 - TX73_001770 0.69 -0.3
369,686 + TX73_001770 0.72 -0.1
369,735 + TX73_001770 0.77 -0.4
369,759 - TX73_001770 0.80 -1.1
369,760 + TX73_001770 0.80 +0.1
369,774 + TX73_001770 0.82 -0.1
369,776 - TX73_001770 0.82 -2.1
369,862 + +0.9
369,870 - +0.4
369,870 - +0.1
369,928 + -0.1
369,999 + -0.5
370,003 - -0.5
370,003 - +0.6
370,005 - -0.1
370,019 + -0.3
370,027 - +1.8
370,098 + TX73_001775 0.21 -0.1
370,103 + TX73_001775 0.22 -0.4
370,111 - TX73_001775 0.24 +0.0
370,112 + TX73_001775 0.24 +0.4
370,117 - TX73_001775 0.25 -0.2
370,120 - TX73_001775 0.26 +0.6
370,120 - TX73_001775 0.26 -1.1
370,120 - TX73_001775 0.26 +0.3
370,120 - TX73_001775 0.26 -0.6
370,120 - TX73_001775 0.26 -0.5
370,120 - TX73_001775 0.26 -1.1
370,120 - TX73_001775 0.26 -1.4
370,133 + TX73_001775 0.28 -0.8
370,135 - TX73_001775 0.28 -0.4
370,156 - TX73_001775 0.33 +0.8
370,158 + TX73_001775 0.33 -0.6
370,169 + TX73_001775 0.35 +0.8
370,172 - TX73_001775 0.36 -0.3
370,174 + TX73_001775 0.36 -0.3
370,179 + TX73_001775 0.37 +0.9
370,187 - TX73_001775 0.39 +0.2
370,270 + TX73_001775 0.55 +0.1
370,278 - TX73_001775 0.56 -1.2
370,278 - TX73_001775 0.56 -0.5
370,281 + TX73_001775 0.57 +1.4
370,281 + TX73_001775 0.57 -0.8
370,289 - TX73_001775 0.58 +0.8
370,289 - TX73_001775 0.58 -0.9
370,289 - TX73_001775 0.58 -2.5
370,289 - TX73_001775 0.58 -0.1
370,296 - TX73_001775 0.60 -1.8
370,308 - TX73_001775 0.62 +0.8
370,387 + TX73_001775 0.77 -1.2
370,400 - TX73_001775 0.80 -0.3
370,408 - TX73_001775 0.81 -1.4
370,445 - TX73_001775 0.89 +0.9
370,477 - +0.8
370,477 - +0.8
370,536 + -0.0
370,562 + -2.9
370,569 + -1.7
370,584 - +0.6
370,638 + TX73_001780 0.14 -1.3
370,672 + TX73_001780 0.19 -0.0
370,682 - TX73_001780 0.20 -0.9
370,691 - TX73_001780 0.21 +0.5
370,728 - TX73_001780 0.26 +0.7
370,733 - TX73_001780 0.26 -2.2
370,752 + TX73_001780 0.29 +0.7
370,753 + TX73_001780 0.29 +0.3
370,760 - TX73_001780 0.30 +0.7
370,787 - TX73_001780 0.33 +0.1
370,844 + TX73_001780 0.40 +1.5
370,877 + TX73_001780 0.45 +0.2
370,900 + TX73_001780 0.48 -0.1
370,908 - TX73_001780 0.49 +0.3
370,908 - TX73_001780 0.49 -0.3
370,938 - TX73_001780 0.52 +0.7
370,980 - TX73_001780 0.58 -0.0
370,980 - TX73_001780 0.58 -0.2
370,984 + TX73_001780 0.58 +0.5
371,014 - TX73_001780 0.62 +0.8
371,017 + TX73_001780 0.62 +0.2
371,115 + TX73_001780 0.75 +0.9
371,121 + TX73_001780 0.76 -0.4
371,121 + TX73_001780 0.76 -0.2
371,123 - TX73_001780 0.76 +0.0
371,145 + TX73_001780 0.79 +0.6
371,163 - TX73_001780 0.81 -0.4
371,208 + TX73_001780 0.87 -0.4
371,211 - TX73_001780 0.87 +0.3
371,211 - TX73_001780 0.87 +0.8
371,235 - -0.6
371,243 - -1.5
371,261 + +0.2
371,267 - -3.6
371,267 - +1.8
371,276 + +0.0
371,336 - +0.1
371,367 + +1.5
371,380 - -0.5
371,428 + +1.1
371,490 - +0.7
371,490 - +1.1
371,490 - +0.9
371,490 - +0.3
371,569 - +0.0
371,605 + TX73_001785 0.11 -1.1
371,624 + TX73_001785 0.13 +0.4
371,624 + TX73_001785 0.13 -0.5
371,630 + TX73_001785 0.13 +0.4
371,630 + TX73_001785 0.13 +0.1
371,630 + TX73_001785 0.13 -0.3
371,630 + TX73_001785 0.13 -0.1
371,632 - TX73_001785 0.13 +0.2
371,633 - TX73_001785 0.13 -0.0
371,635 + TX73_001785 0.13 -0.1
371,746 + TX73_001785 0.20 -0.5
371,754 - TX73_001785 0.21 +0.4
371,766 + TX73_001785 0.22 +0.9
371,769 - TX73_001785 0.22 +0.6
371,785 - TX73_001785 0.23 -1.1
371,844 - TX73_001785 0.27 -1.0
371,860 + TX73_001785 0.28 +0.1
371,868 - TX73_001785 0.28 -0.6
371,875 - TX73_001785 0.29 +0.2
371,883 - TX73_001785 0.29 -0.3
371,883 - TX73_001785 0.29 +0.8
371,943 - TX73_001785 0.33 +0.1
371,945 - TX73_001785 0.33 -0.4
371,972 + TX73_001785 0.35 +0.4
371,978 - TX73_001785 0.35 -2.2
371,987 + TX73_001785 0.36 +0.1
372,037 + TX73_001785 0.39 +0.3
372,037 + TX73_001785 0.39 +0.2
372,037 + TX73_001785 0.39 -0.0
372,045 - TX73_001785 0.39 +0.7
372,076 + TX73_001785 0.41 +0.1
372,106 + TX73_001785 0.43 -0.0
372,178 - TX73_001785 0.48 +0.1
372,203 - TX73_001785 0.50 -1.5
372,216 + TX73_001785 0.50 -0.4
372,254 - TX73_001785 0.53 -0.7
372,286 + TX73_001785 0.55 +0.7
372,301 + TX73_001785 0.56 +0.2
372,301 + TX73_001785 0.56 +0.8

Or see this region's nucleotide sequence