Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_021150

Experiment: PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_021145 and TX73_021150 are separated by 715 nucleotidesTX73_021150 and TX73_021155 overlap by 8 nucleotides TX73_021145: TX73_021145 - site-specific integrase, at 4,619,837 to 4,621,063 _021145 TX73_021150: TX73_021150 - hypothetical protein, at 4,621,779 to 4,622,531 _021150 TX73_021155: TX73_021155 - AAA family ATPase, at 4,622,524 to 4,624,482 _021155 Position (kb) 4621 4622 4623Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4620.788 kb on - strand, within TX73_021145at 4620.793 kb on + strand, within TX73_021145at 4620.841 kb on + strand, within TX73_021145at 4620.841 kb on + strand, within TX73_021145at 4620.849 kb on - strand, within TX73_021145at 4620.856 kb on + strand, within TX73_021145at 4620.875 kb on - strand, within TX73_021145at 4620.889 kb on + strand, within TX73_021145at 4620.890 kb on + strand, within TX73_021145at 4620.898 kb on - strand, within TX73_021145at 4620.898 kb on - strand, within TX73_021145at 4620.943 kb on - strandat 4620.943 kb on - strandat 4620.954 kb on - strandat 4620.954 kb on - strandat 4620.973 kb on - strandat 4620.992 kb on - strandat 4620.994 kb on + strandat 4621.002 kb on - strandat 4621.047 kb on - strandat 4621.097 kb on + strandat 4621.148 kb on - strandat 4621.148 kb on - strandat 4621.188 kb on - strandat 4621.311 kb on + strandat 4621.313 kb on - strandat 4621.337 kb on - strandat 4621.361 kb on + strandat 4621.369 kb on - strandat 4621.403 kb on - strandat 4621.408 kb on - strandat 4621.436 kb on - strandat 4621.457 kb on - strandat 4621.459 kb on - strandat 4621.459 kb on - strandat 4621.464 kb on - strandat 4621.469 kb on - strandat 4621.469 kb on - strandat 4621.475 kb on - strandat 4621.521 kb on + strandat 4621.524 kb on - strandat 4621.529 kb on - strandat 4621.562 kb on + strandat 4621.562 kb on + strandat 4621.562 kb on + strandat 4621.570 kb on - strandat 4621.570 kb on - strandat 4621.570 kb on - strandat 4621.570 kb on - strandat 4621.570 kb on - strandat 4621.604 kb on + strandat 4621.604 kb on + strandat 4621.629 kb on + strandat 4621.635 kb on + strandat 4621.635 kb on + strandat 4621.635 kb on + strandat 4621.635 kb on + strandat 4621.635 kb on + strandat 4621.637 kb on - strandat 4621.643 kb on - strandat 4621.647 kb on - strandat 4621.653 kb on - strandat 4621.671 kb on - strandat 4621.673 kb on - strandat 4621.735 kb on + strandat 4621.750 kb on - strandat 4621.754 kb on - strandat 4621.754 kb on - strandat 4621.754 kb on - strandat 4621.761 kb on - strandat 4621.790 kb on - strandat 4621.858 kb on + strand, within TX73_021150at 4621.859 kb on - strand, within TX73_021150at 4621.859 kb on - strand, within TX73_021150at 4621.864 kb on - strand, within TX73_021150at 4621.864 kb on - strand, within TX73_021150at 4621.866 kb on - strand, within TX73_021150at 4621.866 kb on - strand, within TX73_021150at 4621.868 kb on + strand, within TX73_021150at 4621.877 kb on + strand, within TX73_021150at 4621.901 kb on - strand, within TX73_021150at 4621.945 kb on + strand, within TX73_021150at 4621.999 kb on - strand, within TX73_021150at 4622.008 kb on - strand, within TX73_021150at 4622.022 kb on + strand, within TX73_021150at 4622.022 kb on + strand, within TX73_021150at 4622.030 kb on - strand, within TX73_021150at 4622.030 kb on - strand, within TX73_021150at 4622.047 kb on + strand, within TX73_021150at 4622.082 kb on + strand, within TX73_021150at 4622.090 kb on - strand, within TX73_021150at 4622.121 kb on - strand, within TX73_021150at 4622.149 kb on - strand, within TX73_021150at 4622.155 kb on + strand, within TX73_021150at 4622.165 kb on + strand, within TX73_021150at 4622.165 kb on + strand, within TX73_021150at 4622.173 kb on - strand, within TX73_021150at 4622.210 kb on - strand, within TX73_021150at 4622.293 kb on + strand, within TX73_021150at 4622.301 kb on - strand, within TX73_021150at 4622.314 kb on + strand, within TX73_021150at 4622.314 kb on + strand, within TX73_021150at 4622.322 kb on - strand, within TX73_021150at 4622.413 kb on + strand, within TX73_021150at 4622.421 kb on - strand, within TX73_021150at 4622.421 kb on - strand, within TX73_021150at 4622.451 kb on + strand, within TX73_021150at 4622.475 kb on - strandat 4622.499 kb on - strandat 4622.499 kb on - strandat 4622.504 kb on - strandat 4622.519 kb on + strandat 4622.527 kb on - strandat 4622.609 kb on + strandat 4622.720 kb on + strand, within TX73_021155at 4622.756 kb on + strand, within TX73_021155at 4622.844 kb on + strand, within TX73_021155at 4622.852 kb on - strand, within TX73_021155at 4622.876 kb on + strand, within TX73_021155at 4622.884 kb on + strand, within TX73_021155at 4622.928 kb on - strand, within TX73_021155at 4622.949 kb on + strand, within TX73_021155at 4622.955 kb on - strand, within TX73_021155at 4622.957 kb on - strand, within TX73_021155at 4622.957 kb on - strand, within TX73_021155at 4622.957 kb on - strand, within TX73_021155at 4622.957 kb on - strand, within TX73_021155at 4622.957 kb on - strand, within TX73_021155at 4622.957 kb on - strand, within TX73_021155at 4622.957 kb on - strand, within TX73_021155at 4622.957 kb on - strand, within TX73_021155at 4622.964 kb on + strand, within TX73_021155at 4622.972 kb on - strand, within TX73_021155at 4622.979 kb on + strand, within TX73_021155at 4622.979 kb on + strand, within TX73_021155at 4622.979 kb on + strand, within TX73_021155at 4622.989 kb on + strand, within TX73_021155at 4622.990 kb on - strand, within TX73_021155at 4622.994 kb on + strand, within TX73_021155at 4623.065 kb on + strand, within TX73_021155at 4623.085 kb on + strand, within TX73_021155at 4623.093 kb on - strand, within TX73_021155at 4623.199 kb on - strand, within TX73_021155at 4623.211 kb on + strand, within TX73_021155at 4623.254 kb on + strand, within TX73_021155at 4623.254 kb on + strand, within TX73_021155at 4623.273 kb on - strand, within TX73_021155at 4623.294 kb on - strand, within TX73_021155at 4623.306 kb on - strand, within TX73_021155at 4623.308 kb on + strand, within TX73_021155at 4623.316 kb on - strand, within TX73_021155at 4623.324 kb on + strand, within TX73_021155at 4623.324 kb on + strand, within TX73_021155at 4623.324 kb on + strand, within TX73_021155at 4623.374 kb on + strand, within TX73_021155at 4623.386 kb on + strand, within TX73_021155at 4623.394 kb on + strand, within TX73_021155at 4623.399 kb on + strand, within TX73_021155at 4623.455 kb on - strand, within TX73_021155at 4623.490 kb on + strand, within TX73_021155at 4623.495 kb on + strand, within TX73_021155

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Per-strain Table

Position Strand Gene LocusTag Fraction PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM
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4,620,788 - TX73_021145 0.78 +0.5
4,620,793 + TX73_021145 0.78 -0.3
4,620,841 + TX73_021145 0.82 -0.4
4,620,841 + TX73_021145 0.82 -0.5
4,620,849 - TX73_021145 0.82 -0.5
4,620,856 + TX73_021145 0.83 +0.0
4,620,875 - TX73_021145 0.85 +0.3
4,620,889 + TX73_021145 0.86 -0.7
4,620,890 + TX73_021145 0.86 -0.5
4,620,898 - TX73_021145 0.86 -0.4
4,620,898 - TX73_021145 0.86 -0.8
4,620,943 - -1.4
4,620,943 - -1.3
4,620,954 - -0.2
4,620,954 - -0.8
4,620,973 - -0.1
4,620,992 - -0.8
4,620,994 + -0.3
4,621,002 - +0.4
4,621,047 - +1.1
4,621,097 + -0.3
4,621,148 - +0.4
4,621,148 - -0.2
4,621,188 - -0.3
4,621,311 + +0.4
4,621,313 - -1.0
4,621,337 - -0.0
4,621,361 + -0.5
4,621,369 - +0.5
4,621,403 - +0.2
4,621,408 - -0.5
4,621,436 - +0.2
4,621,457 - -0.4
4,621,459 - +0.5
4,621,459 - +0.1
4,621,464 - +0.3
4,621,469 - -1.4
4,621,469 - +0.2
4,621,475 - -0.6
4,621,521 + +0.1
4,621,524 - +0.2
4,621,529 - -0.3
4,621,562 + +0.2
4,621,562 + -0.2
4,621,562 + +0.4
4,621,570 - -0.8
4,621,570 - -0.1
4,621,570 - +0.7
4,621,570 - -0.2
4,621,570 - -0.6
4,621,604 + -0.3
4,621,604 + -0.1
4,621,629 + +0.6
4,621,635 + -0.2
4,621,635 + +0.5
4,621,635 + +0.4
4,621,635 + -1.2
4,621,635 + +1.0
4,621,637 - +0.4
4,621,643 - +0.3
4,621,647 - -0.3
4,621,653 - -0.1
4,621,671 - -0.4
4,621,673 - -0.8
4,621,735 + -0.1
4,621,750 - +0.6
4,621,754 - -0.2
4,621,754 - -0.9
4,621,754 - +0.2
4,621,761 - +0.1
4,621,790 - -0.5
4,621,858 + TX73_021150 0.10 -0.8
4,621,859 - TX73_021150 0.11 -0.7
4,621,859 - TX73_021150 0.11 -0.4
4,621,864 - TX73_021150 0.11 -0.3
4,621,864 - TX73_021150 0.11 +1.1
4,621,866 - TX73_021150 0.12 -0.5
4,621,866 - TX73_021150 0.12 -1.7
4,621,868 + TX73_021150 0.12 +0.4
4,621,877 + TX73_021150 0.13 -0.7
4,621,901 - TX73_021150 0.16 +0.0
4,621,945 + TX73_021150 0.22 +0.1
4,621,999 - TX73_021150 0.29 -0.0
4,622,008 - TX73_021150 0.30 +0.3
4,622,022 + TX73_021150 0.32 -0.8
4,622,022 + TX73_021150 0.32 -0.0
4,622,030 - TX73_021150 0.33 -0.4
4,622,030 - TX73_021150 0.33 +0.1
4,622,047 + TX73_021150 0.36 -1.4
4,622,082 + TX73_021150 0.40 -0.1
4,622,090 - TX73_021150 0.41 -0.2
4,622,121 - TX73_021150 0.45 -0.0
4,622,149 - TX73_021150 0.49 -0.3
4,622,155 + TX73_021150 0.50 +0.2
4,622,165 + TX73_021150 0.51 -0.7
4,622,165 + TX73_021150 0.51 -0.3
4,622,173 - TX73_021150 0.52 -0.3
4,622,210 - TX73_021150 0.57 -0.1
4,622,293 + TX73_021150 0.68 +0.4
4,622,301 - TX73_021150 0.69 +0.0
4,622,314 + TX73_021150 0.71 -0.0
4,622,314 + TX73_021150 0.71 -0.0
4,622,322 - TX73_021150 0.72 +0.0
4,622,413 + TX73_021150 0.84 +0.1
4,622,421 - TX73_021150 0.85 -0.5
4,622,421 - TX73_021150 0.85 -0.2
4,622,451 + TX73_021150 0.89 +0.1
4,622,475 - -0.4
4,622,499 - -0.0
4,622,499 - +0.2
4,622,504 - -0.1
4,622,519 + +0.0
4,622,527 - -1.0
4,622,609 + +0.1
4,622,720 + TX73_021155 0.10 +2.7
4,622,756 + TX73_021155 0.12 +0.5
4,622,844 + TX73_021155 0.16 -0.6
4,622,852 - TX73_021155 0.17 -0.4
4,622,876 + TX73_021155 0.18 +0.2
4,622,884 + TX73_021155 0.18 -2.9
4,622,928 - TX73_021155 0.21 +0.0
4,622,949 + TX73_021155 0.22 +0.1
4,622,955 - TX73_021155 0.22 +0.3
4,622,957 - TX73_021155 0.22 -0.4
4,622,957 - TX73_021155 0.22 -0.2
4,622,957 - TX73_021155 0.22 +0.3
4,622,957 - TX73_021155 0.22 -0.1
4,622,957 - TX73_021155 0.22 -0.1
4,622,957 - TX73_021155 0.22 +0.2
4,622,957 - TX73_021155 0.22 +0.6
4,622,957 - TX73_021155 0.22 +0.3
4,622,964 + TX73_021155 0.22 +0.5
4,622,972 - TX73_021155 0.23 -0.3
4,622,979 + TX73_021155 0.23 -0.2
4,622,979 + TX73_021155 0.23 +0.4
4,622,979 + TX73_021155 0.23 +0.3
4,622,989 + TX73_021155 0.24 +0.5
4,622,990 - TX73_021155 0.24 +0.3
4,622,994 + TX73_021155 0.24 -0.5
4,623,065 + TX73_021155 0.28 -0.2
4,623,085 + TX73_021155 0.29 +0.2
4,623,093 - TX73_021155 0.29 +0.1
4,623,199 - TX73_021155 0.34 +0.2
4,623,211 + TX73_021155 0.35 +0.1
4,623,254 + TX73_021155 0.37 +0.5
4,623,254 + TX73_021155 0.37 +0.1
4,623,273 - TX73_021155 0.38 -1.1
4,623,294 - TX73_021155 0.39 -0.0
4,623,306 - TX73_021155 0.40 -0.3
4,623,308 + TX73_021155 0.40 +0.4
4,623,316 - TX73_021155 0.40 -0.2
4,623,324 + TX73_021155 0.41 +0.1
4,623,324 + TX73_021155 0.41 -0.4
4,623,324 + TX73_021155 0.41 +0.6
4,623,374 + TX73_021155 0.43 -0.1
4,623,386 + TX73_021155 0.44 +0.2
4,623,394 + TX73_021155 0.44 -0.8
4,623,399 + TX73_021155 0.45 +0.0
4,623,455 - TX73_021155 0.48 +0.3
4,623,490 + TX73_021155 0.49 -1.2
4,623,495 + TX73_021155 0.50 +0.0

Or see this region's nucleotide sequence