Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_020035

Experiment: PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM
4,364,803	+		TX73_020020	0.43	+0.4
4,364,807	-		TX73_020020	0.44	+0.4
4,364,841	+		TX73_020020	0.57	-1.4
4,364,849	+		TX73_020020	0.60	+0.8
4,364,849	+		TX73_020020	0.60	-0.1
4,364,849	+		TX73_020020	0.60	+0.7
4,364,857	-		TX73_020020	0.63	+0.6
4,364,857	-		TX73_020020	0.63	+0.5
4,364,857	-		TX73_020020	0.63	-0.1
4,364,881	+		TX73_020020	0.72	-0.2
4,364,881	+		TX73_020020	0.72	-0.0
4,364,881	-		TX73_020020	0.72	+2.1
4,364,888	+		TX73_020020	0.75	+1.9
4,364,893	+		TX73_020020	0.76	+0.1
4,364,894	+		TX73_020020	0.77	+1.0
4,364,896	-		TX73_020020	0.78	+3.2
4,364,896	-		TX73_020020	0.78	-0.2
4,364,902	-		TX73_020020	0.80	-0.1
4,364,904	+		TX73_020020	0.81	-0.1
4,364,906	-		TX73_020020	0.81	+1.5
4,364,907	-		TX73_020020	0.82	+0.5
4,364,907	-		TX73_020020	0.82	-0.9
4,364,907	-		TX73_020020	0.82	+0.7
4,364,907	-		TX73_020020	0.82	-0.3
4,364,907	-		TX73_020020	0.82	+0.4
4,364,912	+		TX73_020020	0.84	+1.2
4,364,913	-		TX73_020020	0.84	-0.3
4,364,920	-		TX73_020020	0.87	-0.4
4,364,931	-				+0.3
4,364,939	-				+0.0
4,364,939	-				-0.1
4,364,939	-				-0.7
4,364,976	+				-0.2
4,364,984	-				+0.8
4,364,984	-				+0.0
4,364,996	+				+1.0
4,365,037	-		TX73_020025	0.32	+0.3
4,365,037	-		TX73_020025	0.32	+0.3
4,365,039	+		TX73_020025	0.33	-0.6
4,365,047	-		TX73_020025	0.40	-0.1
4,365,054	+		TX73_020025	0.45	-0.7
4,365,076	-		TX73_020025	0.62	-0.2
4,365,088	+		TX73_020025	0.71	+0.7
4,365,088	+		TX73_020025	0.71	-0.9
4,365,096	-		TX73_020025	0.78	-0.0
4,365,096	-		TX73_020025	0.78	-0.3
4,365,096	-		TX73_020025	0.78	-0.2
4,365,101	-		TX73_020025	0.81	-0.0
4,365,114	+				-0.6
4,365,120	+				+0.7
4,365,122	-				-0.9
4,365,125	+				+0.0
4,365,158	-				-0.6
4,365,184	+				+0.2
4,365,201	-				-0.5
4,365,212	-				-1.0
4,365,237	+				-1.0
4,365,245	-				+0.4
4,365,246	-				+0.3
4,365,257	-				-1.6
4,365,267	-				-0.2
4,365,284	+				-0.1
4,365,289	-				-0.3
4,365,289	-				-0.5
4,365,289	-				-0.6
4,365,289	-				-1.0
4,365,289	-				-0.4
4,365,290	-				+0.0
4,365,312	-		TX73_020030	0.13	+0.0
4,365,316	+		TX73_020030	0.14	+0.2
4,365,326	+		TX73_020030	0.16	-0.1
4,365,328	+		TX73_020030	0.16	-0.7
4,365,328	+		TX73_020030	0.16	+0.2
4,365,335	+		TX73_020030	0.18	+0.1
4,365,335	+		TX73_020030	0.18	+0.2
4,365,336	-		TX73_020030	0.18	+0.0
4,365,343	-		TX73_020030	0.19	-0.2
4,365,366	-		TX73_020030	0.24	-1.4
4,365,407	-		TX73_020030	0.33	-0.3
4,365,426	+		TX73_020030	0.37	-0.7
4,365,436	-		TX73_020030	0.40	-0.6
4,365,451	+		TX73_020030	0.43	+0.4
4,365,458	+		TX73_020030	0.44	+1.0
4,365,458	+		TX73_020030	0.44	+0.3
4,365,483	+		TX73_020030	0.50	-0.7
4,365,491	-		TX73_020030	0.52	-0.2
4,365,493	+		TX73_020030	0.52	-0.5
4,365,512	+		TX73_020030	0.56	+0.6
4,365,512	+		TX73_020030	0.56	-0.1
4,365,521	+		TX73_020030	0.58	-0.2
4,365,535	-		TX73_020030	0.61	+0.6
4,365,535	-		TX73_020030	0.61	+0.2
4,365,537	+		TX73_020030	0.61	-0.6
4,365,553	-		TX73_020030	0.65	-0.1
4,365,594	+		TX73_020030	0.74	+0.1
4,365,610	-		TX73_020030	0.77	+0.7
4,365,615	-		TX73_020030	0.78	-0.4
4,365,625	-		TX73_020030	0.81	+0.1
4,365,644	+		TX73_020030	0.85	-0.3
4,365,644	+		TX73_020030	0.85	-0.4
4,365,644	+		TX73_020030	0.85	+0.3
4,365,654	+		TX73_020030	0.87	+0.6
4,365,680	+				-0.0
4,365,708	+				-0.7
4,365,711	-				-0.2
4,365,716	-				-0.7
4,365,739	-				+1.4
4,365,745	+				+0.1
4,365,801	-				+0.2
4,365,820	+				-1.5
4,365,820	+				+0.1
4,365,820	+				+0.7
4,365,828	-				+0.4
4,365,872	+				-0.2
4,365,905	+				+0.1
4,365,905	-				-0.2
4,365,908	-				-0.5
4,365,918	-		TX73_020035	0.10	+0.3
4,365,923	+		TX73_020035	0.11	-1.0
4,365,923	+		TX73_020035	0.11	-0.2
4,365,923	+		TX73_020035	0.11	+0.3
4,365,923	+		TX73_020035	0.11	+0.0
4,365,926	-		TX73_020035	0.11	+0.2
4,365,926	-		TX73_020035	0.11	+0.1
4,365,931	-		TX73_020035	0.11	-0.3
4,365,931	-		TX73_020035	0.11	-0.3
4,365,931	-		TX73_020035	0.11	+0.1
4,365,931	-		TX73_020035	0.11	-0.4
4,365,931	-		TX73_020035	0.11	+0.4
4,365,935	-		TX73_020035	0.11	-0.4
4,366,022	+		TX73_020035	0.17	-0.3
4,366,022	+		TX73_020035	0.17	+0.3
4,366,022	+		TX73_020035	0.17	-0.9
4,366,030	-		TX73_020035	0.18	-0.0
4,366,030	-		TX73_020035	0.18	+0.3
4,366,035	+		TX73_020035	0.18	+0.8
4,366,059	+		TX73_020035	0.20	-0.5
4,366,063	+		TX73_020035	0.20	+0.3
4,366,071	-		TX73_020035	0.21	-0.6
4,366,092	-		TX73_020035	0.22	-0.2
4,366,163	+		TX73_020035	0.27	-0.3
4,366,163	+		TX73_020035	0.27	+0.5
4,366,171	-		TX73_020035	0.28	-0.2
4,366,171	-		TX73_020035	0.28	-0.9
4,366,186	-		TX73_020035	0.29	+0.5
4,366,210	+		TX73_020035	0.30	-0.5
4,366,223	-		TX73_020035	0.31	-1.2
4,366,228	-		TX73_020035	0.31	-0.2
4,366,235	+		TX73_020035	0.32	-0.9
4,366,238	-		TX73_020035	0.32	+0.1
4,366,238	-		TX73_020035	0.32	+1.4
4,366,240	+		TX73_020035	0.32	+0.4
4,366,241	+		TX73_020035	0.32	-0.1
4,366,241	+		TX73_020035	0.32	-0.3
4,366,279	-		TX73_020035	0.35	+0.2
4,366,279	-		TX73_020035	0.35	+0.1
4,366,312	+		TX73_020035	0.37	-0.2
4,366,315	-		TX73_020035	0.37	+0.7
4,366,315	-		TX73_020035	0.37	-0.2
4,366,364	+		TX73_020035	0.41	-0.8
4,366,369	+		TX73_020035	0.41	-0.4
4,366,390	-		TX73_020035	0.43	+0.9
4,366,408	+		TX73_020035	0.44	+0.5
4,366,408	+		TX73_020035	0.44	-0.4
4,366,416	-		TX73_020035	0.44	-0.8
4,366,416	-		TX73_020035	0.44	-0.2
4,366,416	-		TX73_020035	0.44	-1.0
4,366,425	+		TX73_020035	0.45	-0.1
4,366,431	+		TX73_020035	0.45	+0.1
4,366,447	-		TX73_020035	0.47	-0.6
4,366,471	+		TX73_020035	0.48	+0.3
4,366,501	+		TX73_020035	0.50	+0.4
4,366,509	-		TX73_020035	0.51	-1.3
4,366,547	-		TX73_020035	0.53	-0.5
4,366,595	+		TX73_020035	0.57	+0.6
4,366,595	+		TX73_020035	0.57	-1.1
4,366,603	-		TX73_020035	0.57	-0.3
4,366,603	-		TX73_020035	0.57	+0.5
4,366,603	-		TX73_020035	0.57	-0.6
4,366,603	-		TX73_020035	0.57	-0.0
4,366,603	-		TX73_020035	0.57	-0.1
4,366,603	-		TX73_020035	0.57	-0.9
4,366,603	-		TX73_020035	0.57	+0.7
4,366,603	-		TX73_020035	0.57	+0.7
4,366,608	-		TX73_020035	0.58	+0.1
4,366,612	+		TX73_020035	0.58	-0.0
4,366,613	+		TX73_020035	0.58	-0.0
4,366,620	+		TX73_020035	0.58	-0.2
4,366,621	-		TX73_020035	0.58	+0.6
4,366,621	-		TX73_020035	0.58	+1.3
4,366,631	-		TX73_020035	0.59	+0.2
4,366,633	+		TX73_020035	0.59	-0.8
4,366,647	-		TX73_020035	0.60	+0.2
4,366,648	-		TX73_020035	0.60	+1.2
4,366,713	+		TX73_020035	0.65	-1.0
4,366,720	+		TX73_020035	0.65	+0.7
4,366,721	-		TX73_020035	0.65	-0.2
4,366,728	-		TX73_020035	0.66	-0.3
4,366,728	-		TX73_020035	0.66	+0.3
4,366,738	-		TX73_020035	0.66	+0.3
4,366,757	-		TX73_020035	0.68	-0.1
4,366,798	-		TX73_020035	0.71	-0.4
4,366,800	+		TX73_020035	0.71	-1.0
4,366,800	+		TX73_020035	0.71	-0.5
4,366,808	-		TX73_020035	0.71	-0.1
4,366,808	-		TX73_020035	0.71	-0.0
4,366,808	-		TX73_020035	0.71	-0.5
4,366,808	-		TX73_020035	0.71	-0.2
4,366,813	-		TX73_020035	0.72	+0.3
4,366,814	+		TX73_020035	0.72	+0.5
4,366,816	+		TX73_020035	0.72	-0.2
4,366,822	-		TX73_020035	0.72	-0.5
4,366,856	-		TX73_020035	0.75	-0.7
4,366,928	+		TX73_020035	0.79	-0.7
4,366,928	+		TX73_020035	0.79	-0.0
4,366,928	+		TX73_020035	0.79	+0.7
4,366,928	+		TX73_020035	0.79	-0.8
4,366,936	-		TX73_020035	0.80	-0.5
4,366,936	-		TX73_020035	0.80	+0.2
4,366,936	-		TX73_020035	0.80	-0.5
4,366,936	-		TX73_020035	0.80	-0.5
4,366,959	-		TX73_020035	0.82	-0.3
4,366,984	-		TX73_020035	0.83	-0.6
4,366,994	+		TX73_020035	0.84	+1.3
4,367,004	+		TX73_020035	0.85	+0.1
4,367,004	+		TX73_020035	0.85	-0.5
4,367,026	-		TX73_020035	0.86	-0.1
4,367,028	+		TX73_020035	0.86	+0.2
4,367,071	-		TX73_020035	0.89	+0.1
4,367,073	+		TX73_020035	0.89	-0.7
4,367,080	-		TX73_020035	0.90	-0.3
4,367,081	+				-0.2
4,367,090	+				-0.4
4,367,095	+				+0.0
4,367,098	-				-1.4
4,367,098	-				-0.7
4,367,101	+				+0.5
4,367,108	-				+0.4
4,367,129	+				-0.1
4,367,152	-				-0.4
4,367,158	+				+0.3
4,367,171	+				-0.1
4,367,174	+				-0.3
4,367,174	+				-0.9
4,367,182	-				-0.1
4,367,204	+				-0.4
4,367,206	+				+0.0
4,367,206	+				+0.3
4,367,212	-				+1.8
4,367,214	-				-0.4
4,367,214	-				-1.0
4,367,223	+				+0.4
4,367,261	-				+0.1
4,367,287	-				+0.0
4,367,287	-				+0.2
4,367,305	+				-0.6
4,367,305	+				+0.3
4,367,379	-				-0.1
4,367,384	+				-0.1
4,367,390	+				-0.1
4,367,391	+				+0.1
4,367,398	-				-0.0
4,367,398	-				-0.6
4,367,416	-				-0.9
4,367,431	-				-1.2
4,367,433	+				+0.1
4,367,440	+				+0.4
4,367,441	-				-0.5
4,367,441	-				+0.3
4,367,447	+				+0.1
4,367,453	+				-0.4
4,367,461	+				-0.2
4,367,474	-				-0.3
4,367,498	+				+0.4
4,367,511	-				-0.2
4,367,514	+				-0.4
4,367,520	+				+1.0
4,367,533	+				-0.8
4,367,541	-				+0.0
4,367,541	-				-0.7
4,367,565	+				-1.3
4,367,601	+		TX73_020040	0.13	+0.2
4,367,627	-		TX73_020040	0.15	-0.3
4,367,689	+		TX73_020040	0.21	-0.6
4,367,749	+		TX73_020040	0.26	+0.6
4,367,749	+		TX73_020040	0.26	-0.4
4,367,749	+		TX73_020040	0.26	-0.3
4,367,749	+		TX73_020040	0.26	-0.0
4,367,757	-		TX73_020040	0.26	+0.1
4,367,827	-		TX73_020040	0.32	+0.2
4,367,852	-		TX73_020040	0.35	+0.4
4,367,859	+		TX73_020040	0.35	+0.0
4,367,859	+		TX73_020040	0.35	-0.3
4,367,859	+		TX73_020040	0.35	-0.9
4,367,859	+		TX73_020040	0.35	+0.1
4,367,865	-		TX73_020040	0.36	-0.0
4,367,867	-		TX73_020040	0.36	+0.0
4,367,867	-		TX73_020040	0.36	+1.7
4,367,867	-		TX73_020040	0.36	+0.9
4,367,867	-		TX73_020040	0.36	+0.1
4,367,930	-		TX73_020040	0.41	-0.4
4,367,931	+		TX73_020040	0.41	-0.3
4,367,938	-		TX73_020040	0.42	-0.1
4,367,942	+		TX73_020040	0.42	-0.4
4,367,966	-		TX73_020040	0.44	-0.3
4,368,057	+		TX73_020040	0.52	+0.4
4,368,065	-		TX73_020040	0.53	-0.7
4,368,065	-		TX73_020040	0.53	-0.1
4,368,090	-		TX73_020040	0.55	+0.1
4,368,130	+		TX73_020040	0.59	+0.5
4,368,182	-		TX73_020040	0.63	-0.4