Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_014665

Experiment: PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_014660 and TX73_014665 are separated by 44 nucleotidesTX73_014665 and TX73_014670 are separated by 190 nucleotides TX73_014660: TX73_014660 - protein translocase subunit SecD, at 3,204,789 to 3,206,390 _014660 TX73_014665: TX73_014665 - preprotein translocase subunit YajC, at 3,206,435 to 3,206,872 _014665 TX73_014670: TX73_014670 - ATP-binding protein, at 3,207,063 to 3,208,052 _014670 Position (kb) 3206 3207Strain fitness (log2 ratio) -3 -2 -1 0 1at 3206.388 kb on - strandat 3206.395 kb on - strandat 3206.438 kb on + strandat 3206.448 kb on + strandat 3206.448 kb on + strandat 3206.448 kb on + strandat 3206.451 kb on - strandat 3206.456 kb on - strandat 3206.486 kb on - strand, within TX73_014665at 3206.492 kb on - strand, within TX73_014665at 3206.492 kb on - strand, within TX73_014665at 3206.492 kb on - strand, within TX73_014665at 3206.492 kb on - strand, within TX73_014665at 3206.507 kb on - strand, within TX73_014665at 3206.516 kb on - strand, within TX73_014665at 3206.516 kb on - strand, within TX73_014665at 3206.528 kb on - strand, within TX73_014665at 3206.528 kb on - strand, within TX73_014665at 3206.539 kb on - strand, within TX73_014665at 3206.551 kb on - strand, within TX73_014665at 3206.552 kb on - strand, within TX73_014665at 3206.552 kb on - strand, within TX73_014665at 3206.552 kb on - strand, within TX73_014665at 3206.552 kb on - strand, within TX73_014665at 3206.552 kb on - strand, within TX73_014665at 3206.552 kb on - strand, within TX73_014665at 3206.552 kb on - strand, within TX73_014665at 3206.599 kb on - strand, within TX73_014665at 3206.610 kb on - strand, within TX73_014665at 3206.628 kb on - strand, within TX73_014665at 3206.643 kb on - strand, within TX73_014665at 3206.738 kb on - strand, within TX73_014665at 3206.813 kb on - strand, within TX73_014665at 3206.846 kb on - strandat 3206.945 kb on + strandat 3206.945 kb on + strandat 3206.945 kb on + strandat 3206.945 kb on + strandat 3206.953 kb on - strandat 3206.953 kb on - strandat 3206.953 kb on - strandat 3206.953 kb on - strandat 3206.953 kb on - strandat 3206.953 kb on - strandat 3206.953 kb on - strandat 3206.953 kb on - strandat 3206.953 kb on - strandat 3206.955 kb on - strandat 3207.017 kb on - strandat 3207.019 kb on + strandat 3207.019 kb on + strandat 3207.027 kb on - strandat 3207.027 kb on - strandat 3207.027 kb on - strandat 3207.033 kb on + strandat 3207.063 kb on - strandat 3207.063 kb on - strandat 3207.097 kb on - strandat 3207.097 kb on - strandat 3207.177 kb on + strand, within TX73_014670at 3207.185 kb on - strand, within TX73_014670at 3207.200 kb on - strand, within TX73_014670at 3207.200 kb on - strand, within TX73_014670at 3207.206 kb on + strand, within TX73_014670at 3207.210 kb on - strand, within TX73_014670at 3207.242 kb on - strand, within TX73_014670at 3207.247 kb on + strand, within TX73_014670at 3207.260 kb on + strand, within TX73_014670at 3207.260 kb on + strand, within TX73_014670at 3207.275 kb on + strand, within TX73_014670at 3207.288 kb on - strand, within TX73_014670at 3207.296 kb on - strand, within TX73_014670at 3207.300 kb on - strand, within TX73_014670at 3207.332 kb on + strand, within TX73_014670at 3207.340 kb on + strand, within TX73_014670at 3207.354 kb on + strand, within TX73_014670at 3207.359 kb on + strand, within TX73_014670at 3207.359 kb on + strand, within TX73_014670at 3207.364 kb on - strand, within TX73_014670at 3207.374 kb on + strand, within TX73_014670at 3207.377 kb on - strand, within TX73_014670at 3207.387 kb on - strand, within TX73_014670at 3207.389 kb on + strand, within TX73_014670at 3207.397 kb on + strand, within TX73_014670at 3207.407 kb on + strand, within TX73_014670at 3207.412 kb on + strand, within TX73_014670at 3207.420 kb on - strand, within TX73_014670at 3207.423 kb on + strand, within TX73_014670at 3207.431 kb on - strand, within TX73_014670at 3207.438 kb on + strand, within TX73_014670at 3207.440 kb on + strand, within TX73_014670at 3207.440 kb on + strand, within TX73_014670at 3207.440 kb on + strand, within TX73_014670at 3207.440 kb on + strand, within TX73_014670at 3207.440 kb on + strand, within TX73_014670at 3207.440 kb on + strand, within TX73_014670at 3207.440 kb on + strand, within TX73_014670at 3207.448 kb on - strand, within TX73_014670at 3207.448 kb on - strand, within TX73_014670at 3207.448 kb on - strand, within TX73_014670at 3207.448 kb on - strand, within TX73_014670at 3207.448 kb on - strand, within TX73_014670at 3207.448 kb on - strand, within TX73_014670at 3207.448 kb on - strand, within TX73_014670at 3207.448 kb on - strand, within TX73_014670at 3207.448 kb on - strand, within TX73_014670at 3207.462 kb on + strand, within TX73_014670at 3207.476 kb on + strand, within TX73_014670at 3207.476 kb on + strand, within TX73_014670at 3207.476 kb on + strand, within TX73_014670at 3207.484 kb on - strand, within TX73_014670at 3207.499 kb on - strand, within TX73_014670at 3207.527 kb on + strand, within TX73_014670at 3207.534 kb on - strand, within TX73_014670at 3207.555 kb on + strand, within TX73_014670at 3207.557 kb on + strand, within TX73_014670at 3207.565 kb on - strand, within TX73_014670at 3207.578 kb on + strand, within TX73_014670at 3207.612 kb on + strand, within TX73_014670at 3207.627 kb on + strand, within TX73_014670at 3207.665 kb on + strand, within TX73_014670at 3207.665 kb on + strand, within TX73_014670at 3207.665 kb on + strand, within TX73_014670at 3207.673 kb on - strand, within TX73_014670at 3207.688 kb on + strand, within TX73_014670at 3207.695 kb on + strand, within TX73_014670at 3207.698 kb on - strand, within TX73_014670at 3207.709 kb on + strand, within TX73_014670at 3207.711 kb on + strand, within TX73_014670at 3207.717 kb on - strand, within TX73_014670at 3207.717 kb on - strand, within TX73_014670at 3207.757 kb on + strand, within TX73_014670at 3207.757 kb on + strand, within TX73_014670at 3207.757 kb on + strand, within TX73_014670at 3207.765 kb on - strand, within TX73_014670at 3207.812 kb on - strand, within TX73_014670at 3207.816 kb on - strand, within TX73_014670

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Per-strain Table

Position Strand Gene LocusTag Fraction PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM
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3,206,388 - -0.4
3,206,395 - +0.3
3,206,438 + +0.0
3,206,448 + -0.9
3,206,448 + -0.1
3,206,448 + +0.1
3,206,451 - -2.0
3,206,456 - -0.5
3,206,486 - TX73_014665 0.12 -1.1
3,206,492 - TX73_014665 0.13 -0.8
3,206,492 - TX73_014665 0.13 -0.1
3,206,492 - TX73_014665 0.13 +0.8
3,206,492 - TX73_014665 0.13 -0.8
3,206,507 - TX73_014665 0.16 -1.5
3,206,516 - TX73_014665 0.18 -1.2
3,206,516 - TX73_014665 0.18 +0.1
3,206,528 - TX73_014665 0.21 -1.6
3,206,528 - TX73_014665 0.21 -1.4
3,206,539 - TX73_014665 0.24 +0.3
3,206,551 - TX73_014665 0.26 -2.0
3,206,552 - TX73_014665 0.27 -0.5
3,206,552 - TX73_014665 0.27 +1.4
3,206,552 - TX73_014665 0.27 -1.8
3,206,552 - TX73_014665 0.27 -2.2
3,206,552 - TX73_014665 0.27 -3.0
3,206,552 - TX73_014665 0.27 -1.5
3,206,552 - TX73_014665 0.27 -0.9
3,206,599 - TX73_014665 0.37 -0.3
3,206,610 - TX73_014665 0.40 +0.7
3,206,628 - TX73_014665 0.44 -1.8
3,206,643 - TX73_014665 0.47 -0.1
3,206,738 - TX73_014665 0.69 +0.1
3,206,813 - TX73_014665 0.86 -1.4
3,206,846 - +0.6
3,206,945 + -0.2
3,206,945 + +0.4
3,206,945 + -0.3
3,206,945 + -0.4
3,206,953 - -0.6
3,206,953 - +0.3
3,206,953 - +0.5
3,206,953 - -0.5
3,206,953 - -0.2
3,206,953 - -0.0
3,206,953 - +1.3
3,206,953 - +0.2
3,206,953 - +0.6
3,206,955 - -1.1
3,207,017 - +0.2
3,207,019 + -0.5
3,207,019 + -0.6
3,207,027 - -0.6
3,207,027 - +0.2
3,207,027 - +0.3
3,207,033 + -0.4
3,207,063 - -0.3
3,207,063 - -0.7
3,207,097 - -0.2
3,207,097 - +0.2
3,207,177 + TX73_014670 0.12 -0.3
3,207,185 - TX73_014670 0.12 -0.4
3,207,200 - TX73_014670 0.14 +0.1
3,207,200 - TX73_014670 0.14 -0.1
3,207,206 + TX73_014670 0.14 -0.3
3,207,210 - TX73_014670 0.15 -0.4
3,207,242 - TX73_014670 0.18 +0.2
3,207,247 + TX73_014670 0.19 +0.4
3,207,260 + TX73_014670 0.20 -0.5
3,207,260 + TX73_014670 0.20 -0.0
3,207,275 + TX73_014670 0.21 -1.4
3,207,288 - TX73_014670 0.23 -0.3
3,207,296 - TX73_014670 0.24 -0.6
3,207,300 - TX73_014670 0.24 -1.4
3,207,332 + TX73_014670 0.27 +0.2
3,207,340 + TX73_014670 0.28 -0.0
3,207,354 + TX73_014670 0.29 +0.1
3,207,359 + TX73_014670 0.30 -0.6
3,207,359 + TX73_014670 0.30 +0.0
3,207,364 - TX73_014670 0.30 +0.3
3,207,374 + TX73_014670 0.31 -0.3
3,207,377 - TX73_014670 0.32 +0.7
3,207,387 - TX73_014670 0.33 +0.1
3,207,389 + TX73_014670 0.33 +0.1
3,207,397 + TX73_014670 0.34 -0.2
3,207,407 + TX73_014670 0.35 -0.2
3,207,412 + TX73_014670 0.35 -0.6
3,207,420 - TX73_014670 0.36 -0.3
3,207,423 + TX73_014670 0.36 -0.2
3,207,431 - TX73_014670 0.37 +0.5
3,207,438 + TX73_014670 0.38 -0.0
3,207,440 + TX73_014670 0.38 -0.2
3,207,440 + TX73_014670 0.38 +0.4
3,207,440 + TX73_014670 0.38 -1.0
3,207,440 + TX73_014670 0.38 -0.1
3,207,440 + TX73_014670 0.38 +0.0
3,207,440 + TX73_014670 0.38 +0.4
3,207,440 + TX73_014670 0.38 -0.1
3,207,448 - TX73_014670 0.39 -0.6
3,207,448 - TX73_014670 0.39 -0.7
3,207,448 - TX73_014670 0.39 +0.3
3,207,448 - TX73_014670 0.39 +0.0
3,207,448 - TX73_014670 0.39 -0.8
3,207,448 - TX73_014670 0.39 -0.6
3,207,448 - TX73_014670 0.39 -0.5
3,207,448 - TX73_014670 0.39 +0.0
3,207,448 - TX73_014670 0.39 +0.1
3,207,462 + TX73_014670 0.40 -0.1
3,207,476 + TX73_014670 0.42 +0.4
3,207,476 + TX73_014670 0.42 +0.1
3,207,476 + TX73_014670 0.42 -0.6
3,207,484 - TX73_014670 0.43 -0.2
3,207,499 - TX73_014670 0.44 +0.1
3,207,527 + TX73_014670 0.47 +0.2
3,207,534 - TX73_014670 0.48 -0.5
3,207,555 + TX73_014670 0.50 -0.5
3,207,557 + TX73_014670 0.50 +0.1
3,207,565 - TX73_014670 0.51 +0.1
3,207,578 + TX73_014670 0.52 +0.7
3,207,612 + TX73_014670 0.55 -0.5
3,207,627 + TX73_014670 0.57 -0.2
3,207,665 + TX73_014670 0.61 -0.2
3,207,665 + TX73_014670 0.61 -0.4
3,207,665 + TX73_014670 0.61 -0.4
3,207,673 - TX73_014670 0.62 -1.0
3,207,688 + TX73_014670 0.63 +0.6
3,207,695 + TX73_014670 0.64 -0.4
3,207,698 - TX73_014670 0.64 +0.1
3,207,709 + TX73_014670 0.65 +0.0
3,207,711 + TX73_014670 0.65 -0.5
3,207,717 - TX73_014670 0.66 -0.0
3,207,717 - TX73_014670 0.66 -0.1
3,207,757 + TX73_014670 0.70 +0.0
3,207,757 + TX73_014670 0.70 +0.4
3,207,757 + TX73_014670 0.70 -0.5
3,207,765 - TX73_014670 0.71 -0.2
3,207,812 - TX73_014670 0.76 +0.2
3,207,816 - TX73_014670 0.76 -0.1

Or see this region's nucleotide sequence