Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_010405

Experiment: PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_010400 and TX73_010405 are separated by 96 nucleotidesTX73_010405 and TX73_010410 are separated by 10 nucleotides TX73_010400: TX73_010400 - zinc-binding dehydrogenase, at 2,273,051 to 2,274,073 _010400 TX73_010405: TX73_010405 - beta-ketoacyl-ACP synthase, at 2,274,170 to 2,275,450 _010405 TX73_010410: TX73_010410 - beta-ketoacyl-ACP synthase, at 2,275,461 to 2,276,669 _010410 Position (kb) 2274 2275 2276Strain fitness (log2 ratio) -1 0 1at 2274.079 kb on - strandat 2274.090 kb on + strandat 2274.090 kb on + strandat 2274.096 kb on + strandat 2274.097 kb on - strandat 2274.114 kb on - strandat 2275.479 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM
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2,274,079 - +0.1
2,274,090 + +1.0
2,274,090 + +0.1
2,274,096 + -0.1
2,274,097 - +0.1
2,274,114 - +0.2
2,275,479 - +0.1

Or see this region's nucleotide sequence