Experiment: PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_004290 and TX73_004295 are separated by 72 nucleotides TX73_004295 and TX73_004300 are separated by 11 nucleotides TX73_004300 and TX73_004305 are separated by 14 nucleotides TX73_004305 and TX73_004310 are separated by 71 nucleotides
TX73_004290: TX73_004290 - cytochrome c oxidase subunit I, at 927,250 to 928,875
_004290
TX73_004295: TX73_004295 - heme o synthase, at 928,948 to 929,886
_004295
TX73_004300: TX73_004300 - CoxF protein, at 929,898 to 930,065
_004300
TX73_004305: TX73_004305 - cytochrome c oxidase assembly protein, at 930,080 to 930,706
_004305
TX73_004310: TX73_004310 - cytochrome c oxidase subunit 3, at 930,778 to 931,632
_004310
Position (kb) 928
929
930 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 927.953 kb on + strand, within TX73_004290 at 927.969 kb on + strand, within TX73_004290 at 927.997 kb on + strand, within TX73_004290 at 928.023 kb on + strand, within TX73_004290 at 928.059 kb on + strand, within TX73_004290 at 928.075 kb on - strand, within TX73_004290 at 928.137 kb on - strand, within TX73_004290 at 928.154 kb on + strand, within TX73_004290 at 928.157 kb on + strand, within TX73_004290 at 928.189 kb on - strand, within TX73_004290 at 928.203 kb on + strand, within TX73_004290 at 928.203 kb on + strand, within TX73_004290 at 928.203 kb on + strand, within TX73_004290 at 928.211 kb on - strand, within TX73_004290 at 928.211 kb on - strand, within TX73_004290 at 928.221 kb on + strand, within TX73_004290 at 928.229 kb on - strand, within TX73_004290 at 928.229 kb on - strand, within TX73_004290 at 928.244 kb on - strand, within TX73_004290 at 928.293 kb on + strand, within TX73_004290 at 928.303 kb on + strand, within TX73_004290 at 928.316 kb on - strand, within TX73_004290 at 928.317 kb on - strand, within TX73_004290 at 928.317 kb on - strand, within TX73_004290 at 928.347 kb on - strand, within TX73_004290 at 928.402 kb on - strand, within TX73_004290 at 928.402 kb on - strand, within TX73_004290 at 928.448 kb on - strand, within TX73_004290 at 928.564 kb on + strand, within TX73_004290 at 928.594 kb on + strand, within TX73_004290 at 928.614 kb on + strand, within TX73_004290 at 928.617 kb on - strand, within TX73_004290 at 928.637 kb on - strand, within TX73_004290 at 928.723 kb on + strand at 928.731 kb on - strand at 928.768 kb on - strand at 928.768 kb on - strand at 928.807 kb on + strand at 928.812 kb on + strand at 928.820 kb on - strand at 928.824 kb on + strand at 928.838 kb on + strand at 928.867 kb on - strand at 928.883 kb on + strand at 928.890 kb on + strand at 928.947 kb on - strand at 928.962 kb on + strand at 929.015 kb on + strand at 929.033 kb on - strand at 929.033 kb on - strand at 929.045 kb on + strand, within TX73_004295 at 929.045 kb on + strand, within TX73_004295 at 929.070 kb on - strand, within TX73_004295 at 929.076 kb on + strand, within TX73_004295 at 929.231 kb on + strand, within TX73_004295 at 929.239 kb on - strand, within TX73_004295 at 929.269 kb on + strand, within TX73_004295 at 929.308 kb on - strand, within TX73_004295 at 929.326 kb on + strand, within TX73_004295 at 929.352 kb on - strand, within TX73_004295 at 929.382 kb on + strand, within TX73_004295 at 929.390 kb on - strand, within TX73_004295 at 929.390 kb on - strand, within TX73_004295 at 929.390 kb on - strand, within TX73_004295 at 929.392 kb on + strand, within TX73_004295 at 929.437 kb on + strand, within TX73_004295 at 929.462 kb on - strand, within TX73_004295 at 929.482 kb on + strand, within TX73_004295 at 929.490 kb on - strand, within TX73_004295 at 929.505 kb on + strand, within TX73_004295 at 929.523 kb on + strand, within TX73_004295 at 929.609 kb on - strand, within TX73_004295 at 929.625 kb on + strand, within TX73_004295 at 929.630 kb on + strand, within TX73_004295 at 929.633 kb on - strand, within TX73_004295 at 929.641 kb on - strand, within TX73_004295 at 929.688 kb on + strand, within TX73_004295 at 929.696 kb on - strand, within TX73_004295 at 929.696 kb on - strand, within TX73_004295 at 929.697 kb on - strand, within TX73_004295 at 929.786 kb on + strand, within TX73_004295 at 929.786 kb on + strand, within TX73_004295 at 929.794 kb on + strand at 929.794 kb on - strand at 929.796 kb on + strand at 929.812 kb on - strand at 929.863 kb on + strand at 929.867 kb on + strand at 929.881 kb on + strand at 929.897 kb on + strand at 929.926 kb on + strand, within TX73_004300 at 929.926 kb on + strand, within TX73_004300 at 929.934 kb on - strand, within TX73_004300 at 929.934 kb on - strand, within TX73_004300 at 929.993 kb on + strand, within TX73_004300 at 930.019 kb on + strand, within TX73_004300 at 930.019 kb on + strand, within TX73_004300 at 930.019 kb on - strand, within TX73_004300 at 930.027 kb on - strand, within TX73_004300 at 930.029 kb on + strand, within TX73_004300 at 930.029 kb on + strand, within TX73_004300 at 930.037 kb on - strand, within TX73_004300 at 930.040 kb on + strand, within TX73_004300 at 930.045 kb on + strand, within TX73_004300 at 930.053 kb on - strand at 930.214 kb on - strand, within TX73_004305 at 930.239 kb on + strand, within TX73_004305 at 930.280 kb on - strand, within TX73_004305 at 930.280 kb on - strand, within TX73_004305 at 930.302 kb on + strand, within TX73_004305 at 930.310 kb on - strand, within TX73_004305 at 930.361 kb on + strand, within TX73_004305 at 930.520 kb on + strand, within TX73_004305 at 930.528 kb on - strand, within TX73_004305 at 930.538 kb on + strand, within TX73_004305 at 930.541 kb on - strand, within TX73_004305 at 930.603 kb on - strand, within TX73_004305 at 930.630 kb on - strand, within TX73_004305 at 930.643 kb on + strand, within TX73_004305 at 930.648 kb on + strand at 930.656 kb on - strand at 930.686 kb on - strand at 930.809 kb on - strand at 930.850 kb on + strand at 930.858 kb on - strand at 930.882 kb on + strand, within TX73_004310 at 930.882 kb on + strand, within TX73_004310
Per-strain Table
Position Strand Gene LocusTag Fraction PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM remove 927,953 + TX73_004290 0.43 -0.2 927,969 + TX73_004290 0.44 -0.5 927,997 + TX73_004290 0.46 -1.5 928,023 + TX73_004290 0.48 +0.0 928,059 + TX73_004290 0.50 -0.2 928,075 - TX73_004290 0.51 +0.6 928,137 - TX73_004290 0.55 +0.4 928,154 + TX73_004290 0.56 +0.8 928,157 + TX73_004290 0.56 -0.2 928,189 - TX73_004290 0.58 +0.5 928,203 + TX73_004290 0.59 +0.3 928,203 + TX73_004290 0.59 +0.6 928,203 + TX73_004290 0.59 -0.8 928,211 - TX73_004290 0.59 +0.6 928,211 - TX73_004290 0.59 -0.7 928,221 + TX73_004290 0.60 -1.0 928,229 - TX73_004290 0.60 -1.3 928,229 - TX73_004290 0.60 +0.4 928,244 - TX73_004290 0.61 +1.1 928,293 + TX73_004290 0.64 -0.7 928,303 + TX73_004290 0.65 -1.2 928,316 - TX73_004290 0.66 +0.5 928,317 - TX73_004290 0.66 -0.1 928,317 - TX73_004290 0.66 -1.1 928,347 - TX73_004290 0.67 +0.3 928,402 - TX73_004290 0.71 -0.3 928,402 - TX73_004290 0.71 +0.6 928,448 - TX73_004290 0.74 +0.1 928,564 + TX73_004290 0.81 -0.4 928,594 + TX73_004290 0.83 +0.9 928,614 + TX73_004290 0.84 +0.1 928,617 - TX73_004290 0.84 -0.5 928,637 - TX73_004290 0.85 +2.1 928,723 + +1.2 928,731 - -0.1 928,768 - -0.2 928,768 - +0.8 928,807 + +0.2 928,812 + +0.2 928,820 - +0.4 928,824 + -0.2 928,838 + -0.3 928,867 - +0.6 928,883 + -0.5 928,890 + -0.2 928,947 - -1.9 928,962 + -0.1 929,015 + -0.0 929,033 - -1.1 929,033 - +0.4 929,045 + TX73_004295 0.10 +0.4 929,045 + TX73_004295 0.10 -1.4 929,070 - TX73_004295 0.13 +0.3 929,076 + TX73_004295 0.14 +0.2 929,231 + TX73_004295 0.30 +0.5 929,239 - TX73_004295 0.31 +0.5 929,269 + TX73_004295 0.34 -0.4 929,308 - TX73_004295 0.38 -0.6 929,326 + TX73_004295 0.40 +1.3 929,352 - TX73_004295 0.43 -0.4 929,382 + TX73_004295 0.46 +0.1 929,390 - TX73_004295 0.47 -0.1 929,390 - TX73_004295 0.47 +0.1 929,390 - TX73_004295 0.47 -0.1 929,392 + TX73_004295 0.47 +0.3 929,437 + TX73_004295 0.52 -0.2 929,462 - TX73_004295 0.55 +0.2 929,482 + TX73_004295 0.57 +0.5 929,490 - TX73_004295 0.58 -0.3 929,505 + TX73_004295 0.59 -0.4 929,523 + TX73_004295 0.61 -0.3 929,609 - TX73_004295 0.70 -0.2 929,625 + TX73_004295 0.72 -2.9 929,630 + TX73_004295 0.73 -0.5 929,633 - TX73_004295 0.73 +0.1 929,641 - TX73_004295 0.74 +0.2 929,688 + TX73_004295 0.79 +0.5 929,696 - TX73_004295 0.80 +0.8 929,696 - TX73_004295 0.80 -0.3 929,697 - TX73_004295 0.80 +0.3 929,786 + TX73_004295 0.89 -0.5 929,786 + TX73_004295 0.89 -0.3 929,794 + -0.4 929,794 - +0.1 929,796 + +0.8 929,812 - -1.0 929,863 + -0.9 929,867 + -0.2 929,881 + +0.1 929,897 + +1.1 929,926 + TX73_004300 0.17 -1.6 929,926 + TX73_004300 0.17 -0.4 929,934 - TX73_004300 0.21 +0.2 929,934 - TX73_004300 0.21 -1.3 929,993 + TX73_004300 0.57 +0.3 930,019 + TX73_004300 0.72 -2.3 930,019 + TX73_004300 0.72 -0.7 930,019 - TX73_004300 0.72 +0.3 930,027 - TX73_004300 0.77 +0.3 930,029 + TX73_004300 0.78 +0.4 930,029 + TX73_004300 0.78 +1.1 930,037 - TX73_004300 0.83 +1.0 930,040 + TX73_004300 0.85 -0.9 930,045 + TX73_004300 0.88 +0.1 930,053 - +0.9 930,214 - TX73_004305 0.21 -0.1 930,239 + TX73_004305 0.25 -1.5 930,280 - TX73_004305 0.32 -0.2 930,280 - TX73_004305 0.32 +0.8 930,302 + TX73_004305 0.35 -0.1 930,310 - TX73_004305 0.37 -0.4 930,361 + TX73_004305 0.45 -1.3 930,520 + TX73_004305 0.70 -0.6 930,528 - TX73_004305 0.71 -1.4 930,538 + TX73_004305 0.73 -0.8 930,541 - TX73_004305 0.74 +0.0 930,603 - TX73_004305 0.83 -0.9 930,630 - TX73_004305 0.88 -0.2 930,643 + TX73_004305 0.90 +0.1 930,648 + +0.0 930,656 - -0.4 930,686 - +0.1 930,809 - -0.4 930,850 + +0.9 930,858 - -0.1 930,882 + TX73_004310 0.12 +0.2 930,882 + TX73_004310 0.12 -0.3
Or see this region's nucleotide sequence