Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_003740

Experiment: PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_003730 and TX73_003735 are separated by 11 nucleotidesTX73_003735 and TX73_003740 overlap by 4 nucleotidesTX73_003740 and TX73_003745 are separated by 7 nucleotides TX73_003730: TX73_003730 - threonine-phosphate decarboxylase CobD, at 794,584 to 795,573 _003730 TX73_003735: TX73_003735 - ABC transporter ATP-binding protein, at 795,585 to 796,364 _003735 TX73_003740: TX73_003740 - iron ABC transporter permease, at 796,361 to 797,386 _003740 TX73_003745: TX73_003745 - HoxN/HupN/NixA family nickel/cobalt transporter, at 797,394 to 798,452 _003745 Position (kb) 796 797 798Strain fitness (log2 ratio) -2 -1 0 1 2at 795.551 kb on - strandat 795.566 kb on - strandat 795.573 kb on - strandat 795.618 kb on + strandat 795.621 kb on - strandat 795.621 kb on - strandat 795.626 kb on - strandat 795.696 kb on + strand, within TX73_003735at 795.696 kb on + strand, within TX73_003735at 795.702 kb on - strand, within TX73_003735at 795.704 kb on - strand, within TX73_003735at 795.798 kb on - strand, within TX73_003735at 795.805 kb on + strand, within TX73_003735at 795.813 kb on - strand, within TX73_003735at 795.817 kb on + strand, within TX73_003735at 795.817 kb on - strand, within TX73_003735at 795.821 kb on + strand, within TX73_003735at 795.825 kb on - strand, within TX73_003735at 795.826 kb on + strand, within TX73_003735at 795.832 kb on + strand, within TX73_003735at 795.858 kb on + strand, within TX73_003735at 795.873 kb on + strand, within TX73_003735at 795.893 kb on - strand, within TX73_003735at 795.903 kb on - strand, within TX73_003735at 795.919 kb on - strand, within TX73_003735at 795.931 kb on + strand, within TX73_003735at 795.934 kb on + strand, within TX73_003735at 795.941 kb on + strand, within TX73_003735at 796.012 kb on - strand, within TX73_003735at 796.012 kb on - strand, within TX73_003735at 796.021 kb on - strand, within TX73_003735at 796.100 kb on + strand, within TX73_003735at 796.107 kb on + strand, within TX73_003735at 796.140 kb on + strand, within TX73_003735at 796.157 kb on - strand, within TX73_003735at 796.195 kb on + strand, within TX73_003735at 796.203 kb on - strand, within TX73_003735at 796.203 kb on - strand, within TX73_003735at 796.226 kb on - strand, within TX73_003735at 796.238 kb on - strand, within TX73_003735at 796.254 kb on + strand, within TX73_003735at 796.295 kb on - strandat 796.297 kb on - strandat 796.299 kb on + strandat 796.299 kb on + strandat 796.307 kb on - strandat 796.307 kb on - strandat 796.315 kb on - strandat 796.322 kb on - strandat 796.345 kb on + strandat 796.347 kb on + strandat 796.353 kb on - strandat 796.355 kb on - strandat 796.409 kb on - strandat 796.543 kb on + strand, within TX73_003740at 796.557 kb on - strand, within TX73_003740at 796.624 kb on - strand, within TX73_003740at 796.717 kb on + strand, within TX73_003740at 796.794 kb on + strand, within TX73_003740at 796.795 kb on - strand, within TX73_003740at 796.874 kb on - strand, within TX73_003740at 796.874 kb on - strand, within TX73_003740at 796.883 kb on - strand, within TX73_003740at 796.953 kb on - strand, within TX73_003740at 796.953 kb on - strand, within TX73_003740at 796.973 kb on - strand, within TX73_003740at 797.057 kb on + strand, within TX73_003740at 797.057 kb on + strand, within TX73_003740at 797.057 kb on + strand, within TX73_003740at 797.057 kb on + strand, within TX73_003740at 797.065 kb on - strand, within TX73_003740at 797.065 kb on - strand, within TX73_003740at 797.065 kb on - strand, within TX73_003740at 797.099 kb on - strand, within TX73_003740at 797.131 kb on - strand, within TX73_003740at 797.132 kb on + strand, within TX73_003740at 797.140 kb on - strand, within TX73_003740at 797.140 kb on - strand, within TX73_003740at 797.145 kb on + strand, within TX73_003740at 797.153 kb on - strand, within TX73_003740at 797.153 kb on - strand, within TX73_003740at 797.156 kb on + strand, within TX73_003740at 797.159 kb on - strand, within TX73_003740at 797.188 kb on - strand, within TX73_003740at 797.215 kb on - strand, within TX73_003740at 797.217 kb on + strand, within TX73_003740at 797.219 kb on + strand, within TX73_003740at 797.219 kb on + strand, within TX73_003740at 797.224 kb on + strand, within TX73_003740at 797.241 kb on + strand, within TX73_003740at 797.262 kb on + strand, within TX73_003740at 797.264 kb on + strand, within TX73_003740at 797.265 kb on - strand, within TX73_003740at 797.327 kb on - strandat 797.327 kb on - strandat 797.351 kb on - strandat 797.388 kb on - strandat 797.388 kb on - strandat 797.388 kb on - strandat 797.395 kb on + strandat 797.405 kb on - strandat 797.429 kb on + strandat 797.437 kb on + strandat 797.496 kb on + strandat 797.560 kb on + strand, within TX73_003745at 797.590 kb on - strand, within TX73_003745at 797.590 kb on - strand, within TX73_003745at 797.622 kb on + strand, within TX73_003745at 797.657 kb on - strand, within TX73_003745at 797.692 kb on - strand, within TX73_003745at 797.718 kb on + strand, within TX73_003745at 797.719 kb on + strand, within TX73_003745at 797.719 kb on + strand, within TX73_003745at 797.729 kb on + strand, within TX73_003745at 797.737 kb on - strand, within TX73_003745at 797.737 kb on - strand, within TX73_003745at 797.740 kb on + strand, within TX73_003745at 797.758 kb on - strand, within TX73_003745at 797.760 kb on + strand, within TX73_003745at 797.760 kb on + strand, within TX73_003745at 797.768 kb on - strand, within TX73_003745at 797.768 kb on - strand, within TX73_003745at 797.806 kb on + strand, within TX73_003745at 797.853 kb on + strand, within TX73_003745at 797.901 kb on - strand, within TX73_003745at 797.901 kb on - strand, within TX73_003745at 797.980 kb on + strand, within TX73_003745at 797.988 kb on - strand, within TX73_003745at 797.988 kb on - strand, within TX73_003745at 798.012 kb on + strand, within TX73_003745at 798.018 kb on - strand, within TX73_003745at 798.018 kb on - strand, within TX73_003745at 798.070 kb on + strand, within TX73_003745at 798.100 kb on + strand, within TX73_003745at 798.100 kb on + strand, within TX73_003745at 798.106 kb on - strand, within TX73_003745at 798.108 kb on - strand, within TX73_003745at 798.164 kb on - strand, within TX73_003745at 798.216 kb on - strand, within TX73_003745at 798.227 kb on + strand, within TX73_003745at 798.229 kb on - strand, within TX73_003745at 798.260 kb on + strand, within TX73_003745at 798.279 kb on + strand, within TX73_003745at 798.284 kb on + strand, within TX73_003745at 798.284 kb on + strand, within TX73_003745at 798.284 kb on + strand, within TX73_003745at 798.287 kb on - strand, within TX73_003745at 798.287 kb on - strand, within TX73_003745at 798.290 kb on + strand, within TX73_003745at 798.290 kb on + strand, within TX73_003745at 798.292 kb on - strand, within TX73_003745at 798.292 kb on - strand, within TX73_003745at 798.292 kb on - strand, within TX73_003745at 798.292 kb on - strand, within TX73_003745at 798.297 kb on + strand, within TX73_003745at 798.297 kb on + strand, within TX73_003745at 798.305 kb on - strand, within TX73_003745at 798.305 kb on - strand, within TX73_003745at 798.323 kb on - strand, within TX73_003745at 798.328 kb on - strand, within TX73_003745at 798.349 kb on + strandat 798.349 kb on + strandat 798.362 kb on - strandat 798.362 kb on - strandat 798.362 kb on - strandat 798.375 kb on - strandat 798.375 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM
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795,551 - -1.4
795,566 - +1.0
795,573 - +0.7
795,618 + +1.0
795,621 - -1.1
795,621 - +0.1
795,626 - +0.6
795,696 + TX73_003735 0.14 +0.3
795,696 + TX73_003735 0.14 +0.8
795,702 - TX73_003735 0.15 +1.1
795,704 - TX73_003735 0.15 +0.9
795,798 - TX73_003735 0.27 +1.4
795,805 + TX73_003735 0.28 +0.5
795,813 - TX73_003735 0.29 +0.3
795,817 + TX73_003735 0.30 -0.8
795,817 - TX73_003735 0.30 +0.3
795,821 + TX73_003735 0.30 +0.6
795,825 - TX73_003735 0.31 +0.3
795,826 + TX73_003735 0.31 +0.1
795,832 + TX73_003735 0.32 +0.8
795,858 + TX73_003735 0.35 +1.0
795,873 + TX73_003735 0.37 -0.2
795,893 - TX73_003735 0.39 +0.5
795,903 - TX73_003735 0.41 +0.1
795,919 - TX73_003735 0.43 +0.4
795,931 + TX73_003735 0.44 +0.6
795,934 + TX73_003735 0.45 +0.6
795,941 + TX73_003735 0.46 -0.2
796,012 - TX73_003735 0.55 +0.6
796,012 - TX73_003735 0.55 +0.5
796,021 - TX73_003735 0.56 +0.5
796,100 + TX73_003735 0.66 +1.2
796,107 + TX73_003735 0.67 +0.3
796,140 + TX73_003735 0.71 +0.4
796,157 - TX73_003735 0.73 +0.3
796,195 + TX73_003735 0.78 +0.7
796,203 - TX73_003735 0.79 +0.9
796,203 - TX73_003735 0.79 +0.2
796,226 - TX73_003735 0.82 +1.1
796,238 - TX73_003735 0.84 +0.8
796,254 + TX73_003735 0.86 +0.3
796,295 - +0.0
796,297 - +0.4
796,299 + +0.2
796,299 + +0.3
796,307 - +0.6
796,307 - +0.2
796,315 - +0.2
796,322 - +0.9
796,345 + +0.6
796,347 + +0.7
796,353 - +0.0
796,355 - -0.0
796,409 - -0.2
796,543 + TX73_003740 0.18 +1.2
796,557 - TX73_003740 0.19 +1.1
796,624 - TX73_003740 0.26 -0.2
796,717 + TX73_003740 0.35 -0.2
796,794 + TX73_003740 0.42 +0.9
796,795 - TX73_003740 0.42 -0.5
796,874 - TX73_003740 0.50 -0.1
796,874 - TX73_003740 0.50 -0.1
796,883 - TX73_003740 0.51 +0.3
796,953 - TX73_003740 0.58 +0.3
796,953 - TX73_003740 0.58 +1.2
796,973 - TX73_003740 0.60 +0.7
797,057 + TX73_003740 0.68 +0.4
797,057 + TX73_003740 0.68 +0.3
797,057 + TX73_003740 0.68 +0.6
797,057 + TX73_003740 0.68 +0.5
797,065 - TX73_003740 0.69 +0.2
797,065 - TX73_003740 0.69 +0.8
797,065 - TX73_003740 0.69 +0.9
797,099 - TX73_003740 0.72 +1.0
797,131 - TX73_003740 0.75 -1.0
797,132 + TX73_003740 0.75 -1.3
797,140 - TX73_003740 0.76 +1.2
797,140 - TX73_003740 0.76 +0.8
797,145 + TX73_003740 0.76 +1.2
797,153 - TX73_003740 0.77 +0.3
797,153 - TX73_003740 0.77 -0.6
797,156 + TX73_003740 0.77 +0.1
797,159 - TX73_003740 0.78 +0.8
797,188 - TX73_003740 0.81 +0.4
797,215 - TX73_003740 0.83 +0.5
797,217 + TX73_003740 0.83 +0.1
797,219 + TX73_003740 0.84 -0.1
797,219 + TX73_003740 0.84 -0.0
797,224 + TX73_003740 0.84 +0.4
797,241 + TX73_003740 0.86 +0.3
797,262 + TX73_003740 0.88 +2.0
797,264 + TX73_003740 0.88 -0.1
797,265 - TX73_003740 0.88 +1.2
797,327 - +0.8
797,327 - -0.1
797,351 - +0.8
797,388 - -0.1
797,388 - +0.9
797,388 - +0.5
797,395 + -0.1
797,405 - +0.6
797,429 + -0.4
797,437 + +0.4
797,496 + -0.2
797,560 + TX73_003745 0.16 -0.8
797,590 - TX73_003745 0.19 +0.4
797,590 - TX73_003745 0.19 +0.4
797,622 + TX73_003745 0.22 +1.7
797,657 - TX73_003745 0.25 +1.2
797,692 - TX73_003745 0.28 +0.3
797,718 + TX73_003745 0.31 +0.6
797,719 + TX73_003745 0.31 -0.2
797,719 + TX73_003745 0.31 -0.3
797,729 + TX73_003745 0.32 +0.4
797,737 - TX73_003745 0.32 +1.1
797,737 - TX73_003745 0.32 +0.9
797,740 + TX73_003745 0.33 +0.7
797,758 - TX73_003745 0.34 +0.3
797,760 + TX73_003745 0.35 +0.3
797,760 + TX73_003745 0.35 +0.5
797,768 - TX73_003745 0.35 +1.2
797,768 - TX73_003745 0.35 +1.1
797,806 + TX73_003745 0.39 +0.7
797,853 + TX73_003745 0.43 -0.4
797,901 - TX73_003745 0.48 +0.2
797,901 - TX73_003745 0.48 +1.0
797,980 + TX73_003745 0.55 +0.2
797,988 - TX73_003745 0.56 +0.6
797,988 - TX73_003745 0.56 +1.0
798,012 + TX73_003745 0.58 +2.6
798,018 - TX73_003745 0.59 +1.6
798,018 - TX73_003745 0.59 +0.8
798,070 + TX73_003745 0.64 -0.3
798,100 + TX73_003745 0.67 +1.3
798,100 + TX73_003745 0.67 +0.4
798,106 - TX73_003745 0.67 -0.9
798,108 - TX73_003745 0.67 +0.1
798,164 - TX73_003745 0.73 +0.5
798,216 - TX73_003745 0.78 +0.4
798,227 + TX73_003745 0.79 +0.6
798,229 - TX73_003745 0.79 +0.8
798,260 + TX73_003745 0.82 +0.0
798,279 + TX73_003745 0.84 -0.7
798,284 + TX73_003745 0.84 +1.5
798,284 + TX73_003745 0.84 +0.5
798,284 + TX73_003745 0.84 -0.0
798,287 - TX73_003745 0.84 +0.0
798,287 - TX73_003745 0.84 -0.1
798,290 + TX73_003745 0.85 -0.2
798,290 + TX73_003745 0.85 -0.5
798,292 - TX73_003745 0.85 +1.9
798,292 - TX73_003745 0.85 +0.3
798,292 - TX73_003745 0.85 +0.2
798,292 - TX73_003745 0.85 +0.2
798,297 + TX73_003745 0.85 +1.3
798,297 + TX73_003745 0.85 +0.6
798,305 - TX73_003745 0.86 +0.5
798,305 - TX73_003745 0.86 +0.2
798,323 - TX73_003745 0.88 +0.7
798,328 - TX73_003745 0.88 +1.8
798,349 + +1.0
798,349 + +1.1
798,362 - -1.7
798,362 - +0.2
798,362 - +1.1
798,375 - +0.1
798,375 - -2.3

Or see this region's nucleotide sequence