Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_003530

Experiment: PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_003525 and TX73_003530 overlap by 4 nucleotidesTX73_003530 and TX73_003535 are separated by 2 nucleotides TX73_003525: TX73_003525 - efflux RND transporter periplasmic adaptor subunit, at 755,860 to 756,891 _003525 TX73_003530: TX73_003530 - ribosome-associated ATPase/putative transporter RbbA, at 756,888 to 759,602 _003530 TX73_003535: TX73_003535 - ABC transporter permease, at 759,605 to 760,732 _003535 Position (kb) 756 757 758 759 760Strain fitness (log2 ratio) -2 -1 0 1 2at 755.888 kb on + strandat 755.890 kb on + strandat 755.898 kb on + strandat 755.910 kb on + strandat 755.916 kb on - strandat 755.918 kb on - strandat 755.920 kb on - strandat 755.986 kb on - strand, within TX73_003525at 756.004 kb on + strand, within TX73_003525at 756.012 kb on - strand, within TX73_003525at 756.038 kb on + strand, within TX73_003525at 756.046 kb on - strand, within TX73_003525at 756.048 kb on + strand, within TX73_003525at 756.056 kb on - strand, within TX73_003525at 756.066 kb on - strand, within TX73_003525at 756.081 kb on - strand, within TX73_003525at 756.120 kb on - strand, within TX73_003525at 756.125 kb on + strand, within TX73_003525at 756.153 kb on + strand, within TX73_003525at 756.159 kb on + strand, within TX73_003525at 756.161 kb on - strand, within TX73_003525at 756.163 kb on + strand, within TX73_003525at 756.173 kb on - strand, within TX73_003525at 756.189 kb on + strand, within TX73_003525at 756.196 kb on + strand, within TX73_003525at 756.199 kb on + strand, within TX73_003525at 756.204 kb on + strand, within TX73_003525at 756.204 kb on + strand, within TX73_003525at 756.204 kb on + strand, within TX73_003525at 756.204 kb on + strand, within TX73_003525at 756.207 kb on - strand, within TX73_003525at 756.207 kb on - strand, within TX73_003525at 756.207 kb on - strand, within TX73_003525at 756.207 kb on - strand, within TX73_003525at 756.207 kb on - strand, within TX73_003525at 756.212 kb on - strand, within TX73_003525at 756.214 kb on - strand, within TX73_003525at 756.245 kb on - strand, within TX73_003525at 756.245 kb on - strand, within TX73_003525at 756.260 kb on + strand, within TX73_003525at 756.268 kb on - strand, within TX73_003525at 756.268 kb on - strand, within TX73_003525at 756.281 kb on + strand, within TX73_003525at 756.281 kb on + strand, within TX73_003525at 756.303 kb on + strand, within TX73_003525at 756.330 kb on + strand, within TX73_003525at 756.338 kb on - strand, within TX73_003525at 756.348 kb on - strand, within TX73_003525at 756.369 kb on - strand, within TX73_003525at 756.379 kb on - strand, within TX73_003525at 756.390 kb on - strand, within TX73_003525at 756.413 kb on - strand, within TX73_003525at 756.428 kb on - strand, within TX73_003525at 756.428 kb on - strand, within TX73_003525at 756.435 kb on + strand, within TX73_003525at 756.435 kb on + strand, within TX73_003525at 756.435 kb on + strand, within TX73_003525at 756.435 kb on + strand, within TX73_003525at 756.435 kb on + strand, within TX73_003525at 756.435 kb on + strand, within TX73_003525at 756.435 kb on + strand, within TX73_003525at 756.435 kb on + strand, within TX73_003525at 756.435 kb on + strand, within TX73_003525at 756.435 kb on + strand, within TX73_003525at 756.443 kb on - strand, within TX73_003525at 756.443 kb on - strand, within TX73_003525at 756.443 kb on - strand, within TX73_003525at 756.443 kb on - strand, within TX73_003525at 756.443 kb on - strand, within TX73_003525at 756.443 kb on - strand, within TX73_003525at 756.443 kb on - strand, within TX73_003525at 756.443 kb on - strand, within TX73_003525at 756.443 kb on - strand, within TX73_003525at 756.448 kb on - strand, within TX73_003525at 756.470 kb on - strand, within TX73_003525at 756.497 kb on + strand, within TX73_003525at 756.500 kb on - strand, within TX73_003525at 756.500 kb on - strand, within TX73_003525at 756.532 kb on - strand, within TX73_003525at 756.565 kb on + strand, within TX73_003525at 756.567 kb on + strand, within TX73_003525at 756.567 kb on + strand, within TX73_003525at 756.629 kb on + strand, within TX73_003525at 756.689 kb on + strand, within TX73_003525at 756.699 kb on + strand, within TX73_003525at 756.699 kb on + strand, within TX73_003525at 756.707 kb on - strand, within TX73_003525at 756.707 kb on - strand, within TX73_003525at 756.726 kb on + strand, within TX73_003525at 756.741 kb on + strand, within TX73_003525at 756.916 kb on - strandat 756.926 kb on + strandat 756.934 kb on - strandat 756.934 kb on - strandat 756.934 kb on - strandat 756.958 kb on - strandat 757.034 kb on - strandat 757.063 kb on + strandat 757.069 kb on - strandat 757.112 kb on + strandat 757.143 kb on - strandat 757.143 kb on - strandat 757.151 kb on - strandat 757.267 kb on - strand, within TX73_003530at 757.340 kb on + strand, within TX73_003530at 757.360 kb on + strand, within TX73_003530at 757.396 kb on + strand, within TX73_003530at 757.404 kb on - strand, within TX73_003530at 757.431 kb on - strand, within TX73_003530at 757.475 kb on + strand, within TX73_003530at 757.532 kb on - strand, within TX73_003530at 757.532 kb on - strand, within TX73_003530at 757.532 kb on - strand, within TX73_003530at 757.651 kb on + strand, within TX73_003530at 757.659 kb on - strand, within TX73_003530at 757.715 kb on - strand, within TX73_003530at 757.857 kb on + strand, within TX73_003530at 757.929 kb on + strand, within TX73_003530at 757.948 kb on + strand, within TX73_003530at 757.956 kb on - strand, within TX73_003530at 758.054 kb on - strand, within TX73_003530at 758.117 kb on + strand, within TX73_003530at 758.248 kb on + strand, within TX73_003530at 758.318 kb on + strand, within TX73_003530at 758.321 kb on - strand, within TX73_003530at 758.339 kb on + strand, within TX73_003530at 758.438 kb on - strand, within TX73_003530at 758.451 kb on - strand, within TX73_003530at 758.467 kb on - strand, within TX73_003530at 758.492 kb on - strand, within TX73_003530at 758.495 kb on + strand, within TX73_003530at 758.495 kb on + strand, within TX73_003530at 758.498 kb on - strand, within TX73_003530at 758.503 kb on - strand, within TX73_003530at 758.503 kb on - strand, within TX73_003530at 758.622 kb on + strand, within TX73_003530at 758.627 kb on + strand, within TX73_003530at 758.630 kb on - strand, within TX73_003530at 758.637 kb on + strand, within TX73_003530at 758.645 kb on - strand, within TX73_003530at 758.645 kb on - strand, within TX73_003530at 758.645 kb on - strand, within TX73_003530at 758.648 kb on + strand, within TX73_003530at 758.648 kb on + strand, within TX73_003530at 758.656 kb on - strand, within TX73_003530at 758.656 kb on - strand, within TX73_003530at 758.701 kb on + strand, within TX73_003530at 758.709 kb on - strand, within TX73_003530at 758.751 kb on + strand, within TX73_003530at 758.808 kb on + strand, within TX73_003530at 758.821 kb on - strand, within TX73_003530at 758.851 kb on + strand, within TX73_003530at 758.882 kb on + strand, within TX73_003530at 758.901 kb on + strand, within TX73_003530at 758.937 kb on + strand, within TX73_003530at 758.955 kb on + strand, within TX73_003530at 759.004 kb on + strand, within TX73_003530at 759.048 kb on - strand, within TX73_003530at 759.078 kb on - strand, within TX73_003530at 759.195 kb on + strand, within TX73_003530at 759.229 kb on + strand, within TX73_003530at 759.268 kb on - strand, within TX73_003530at 759.268 kb on - strand, within TX73_003530at 759.275 kb on + strand, within TX73_003530at 759.283 kb on - strand, within TX73_003530at 759.283 kb on - strand, within TX73_003530at 759.289 kb on + strand, within TX73_003530at 759.297 kb on - strand, within TX73_003530at 759.304 kb on - strand, within TX73_003530at 759.398 kb on + strandat 759.406 kb on - strandat 759.425 kb on + strandat 759.449 kb on + strandat 759.671 kb on - strandat 759.692 kb on + strandat 759.769 kb on + strand, within TX73_003535at 759.778 kb on + strand, within TX73_003535at 759.791 kb on - strand, within TX73_003535at 759.824 kb on + strand, within TX73_003535at 760.066 kb on - strand, within TX73_003535at 760.139 kb on - strand, within TX73_003535at 760.271 kb on - strand, within TX73_003535at 760.293 kb on + strand, within TX73_003535at 760.344 kb on - strand, within TX73_003535at 760.344 kb on - strand, within TX73_003535at 760.363 kb on + strand, within TX73_003535at 760.384 kb on - strand, within TX73_003535at 760.387 kb on - strand, within TX73_003535at 760.390 kb on + strand, within TX73_003535at 760.455 kb on - strand, within TX73_003535at 760.528 kb on + strand, within TX73_003535

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Per-strain Table

Position Strand Gene LocusTag Fraction PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM
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755,888 + -0.4
755,890 + +0.0
755,898 + -0.3
755,910 + +0.4
755,916 - +0.7
755,918 - +0.3
755,920 - +0.6
755,986 - TX73_003525 0.12 -0.1
756,004 + TX73_003525 0.14 -0.1
756,012 - TX73_003525 0.15 +0.5
756,038 + TX73_003525 0.17 +0.8
756,046 - TX73_003525 0.18 -0.4
756,048 + TX73_003525 0.18 -0.6
756,056 - TX73_003525 0.19 -0.0
756,066 - TX73_003525 0.20 -0.7
756,081 - TX73_003525 0.21 -0.2
756,120 - TX73_003525 0.25 +1.1
756,125 + TX73_003525 0.26 -0.3
756,153 + TX73_003525 0.28 -1.8
756,159 + TX73_003525 0.29 -0.0
756,161 - TX73_003525 0.29 -2.2
756,163 + TX73_003525 0.29 +0.5
756,173 - TX73_003525 0.30 -0.3
756,189 + TX73_003525 0.32 +0.2
756,196 + TX73_003525 0.33 +0.2
756,199 + TX73_003525 0.33 -0.1
756,204 + TX73_003525 0.33 +0.4
756,204 + TX73_003525 0.33 +0.5
756,204 + TX73_003525 0.33 +0.4
756,204 + TX73_003525 0.33 -0.3
756,207 - TX73_003525 0.34 +0.5
756,207 - TX73_003525 0.34 +0.4
756,207 - TX73_003525 0.34 -0.6
756,207 - TX73_003525 0.34 +0.6
756,207 - TX73_003525 0.34 +0.3
756,212 - TX73_003525 0.34 -0.4
756,214 - TX73_003525 0.34 +0.2
756,245 - TX73_003525 0.37 -0.4
756,245 - TX73_003525 0.37 +0.5
756,260 + TX73_003525 0.39 -0.4
756,268 - TX73_003525 0.40 -0.5
756,268 - TX73_003525 0.40 +0.8
756,281 + TX73_003525 0.41 -1.3
756,281 + TX73_003525 0.41 +2.0
756,303 + TX73_003525 0.43 +0.9
756,330 + TX73_003525 0.46 +0.0
756,338 - TX73_003525 0.46 +0.6
756,348 - TX73_003525 0.47 +0.3
756,369 - TX73_003525 0.49 +0.1
756,379 - TX73_003525 0.50 -0.9
756,390 - TX73_003525 0.51 -0.2
756,413 - TX73_003525 0.54 +0.3
756,428 - TX73_003525 0.55 -0.4
756,428 - TX73_003525 0.55 -0.1
756,435 + TX73_003525 0.56 +0.1
756,435 + TX73_003525 0.56 -0.6
756,435 + TX73_003525 0.56 -0.8
756,435 + TX73_003525 0.56 -0.6
756,435 + TX73_003525 0.56 -0.3
756,435 + TX73_003525 0.56 -0.1
756,435 + TX73_003525 0.56 -0.1
756,435 + TX73_003525 0.56 +0.2
756,435 + TX73_003525 0.56 +0.2
756,435 + TX73_003525 0.56 +0.3
756,443 - TX73_003525 0.56 -0.2
756,443 - TX73_003525 0.56 -0.2
756,443 - TX73_003525 0.56 +0.0
756,443 - TX73_003525 0.56 +0.5
756,443 - TX73_003525 0.56 +0.0
756,443 - TX73_003525 0.56 +0.5
756,443 - TX73_003525 0.56 -0.4
756,443 - TX73_003525 0.56 +0.3
756,443 - TX73_003525 0.56 +0.1
756,448 - TX73_003525 0.57 +0.3
756,470 - TX73_003525 0.59 -0.5
756,497 + TX73_003525 0.62 -0.0
756,500 - TX73_003525 0.62 -0.6
756,500 - TX73_003525 0.62 +0.1
756,532 - TX73_003525 0.65 +0.7
756,565 + TX73_003525 0.68 +0.2
756,567 + TX73_003525 0.69 -0.8
756,567 + TX73_003525 0.69 +0.2
756,629 + TX73_003525 0.75 -0.4
756,689 + TX73_003525 0.80 -0.1
756,699 + TX73_003525 0.81 -0.6
756,699 + TX73_003525 0.81 +0.0
756,707 - TX73_003525 0.82 +0.0
756,707 - TX73_003525 0.82 -0.1
756,726 + TX73_003525 0.84 -0.8
756,741 + TX73_003525 0.85 +0.7
756,916 - -0.6
756,926 + +0.5
756,934 - +0.9
756,934 - -0.5
756,934 - -0.0
756,958 - -1.4
757,034 - -0.1
757,063 + +0.2
757,069 - +0.2
757,112 + +0.2
757,143 - +0.1
757,143 - +1.4
757,151 - -0.2
757,267 - TX73_003530 0.14 -0.1
757,340 + TX73_003530 0.17 -0.2
757,360 + TX73_003530 0.17 -0.8
757,396 + TX73_003530 0.19 +1.3
757,404 - TX73_003530 0.19 +0.2
757,431 - TX73_003530 0.20 -0.0
757,475 + TX73_003530 0.22 -0.1
757,532 - TX73_003530 0.24 +0.1
757,532 - TX73_003530 0.24 -0.1
757,532 - TX73_003530 0.24 -0.5
757,651 + TX73_003530 0.28 +0.1
757,659 - TX73_003530 0.28 +1.3
757,715 - TX73_003530 0.30 -0.9
757,857 + TX73_003530 0.36 +0.7
757,929 + TX73_003530 0.38 +0.3
757,948 + TX73_003530 0.39 -1.3
757,956 - TX73_003530 0.39 +1.3
758,054 - TX73_003530 0.43 +1.2
758,117 + TX73_003530 0.45 -0.3
758,248 + TX73_003530 0.50 +0.4
758,318 + TX73_003530 0.53 -0.2
758,321 - TX73_003530 0.53 -1.7
758,339 + TX73_003530 0.53 +0.2
758,438 - TX73_003530 0.57 -1.1
758,451 - TX73_003530 0.58 -0.5
758,467 - TX73_003530 0.58 +1.2
758,492 - TX73_003530 0.59 +0.2
758,495 + TX73_003530 0.59 +1.6
758,495 + TX73_003530 0.59 +0.1
758,498 - TX73_003530 0.59 +0.3
758,503 - TX73_003530 0.59 -0.1
758,503 - TX73_003530 0.59 +0.8
758,622 + TX73_003530 0.64 +0.4
758,627 + TX73_003530 0.64 +1.2
758,630 - TX73_003530 0.64 -0.1
758,637 + TX73_003530 0.64 +0.1
758,645 - TX73_003530 0.65 +0.5
758,645 - TX73_003530 0.65 +0.0
758,645 - TX73_003530 0.65 +0.4
758,648 + TX73_003530 0.65 +0.3
758,648 + TX73_003530 0.65 +0.1
758,656 - TX73_003530 0.65 -0.3
758,656 - TX73_003530 0.65 -0.4
758,701 + TX73_003530 0.67 +1.2
758,709 - TX73_003530 0.67 -0.2
758,751 + TX73_003530 0.69 +2.5
758,808 + TX73_003530 0.71 +0.7
758,821 - TX73_003530 0.71 -0.6
758,851 + TX73_003530 0.72 -0.1
758,882 + TX73_003530 0.73 +0.2
758,901 + TX73_003530 0.74 +0.0
758,937 + TX73_003530 0.75 +2.0
758,955 + TX73_003530 0.76 -0.2
759,004 + TX73_003530 0.78 -0.6
759,048 - TX73_003530 0.80 +0.8
759,078 - TX73_003530 0.81 +0.4
759,195 + TX73_003530 0.85 +0.6
759,229 + TX73_003530 0.86 +0.5
759,268 - TX73_003530 0.88 +1.5
759,268 - TX73_003530 0.88 -1.7
759,275 + TX73_003530 0.88 +0.8
759,283 - TX73_003530 0.88 +0.9
759,283 - TX73_003530 0.88 +0.1
759,289 + TX73_003530 0.88 +1.0
759,297 - TX73_003530 0.89 +0.6
759,304 - TX73_003530 0.89 -0.1
759,398 + +0.8
759,406 - +0.8
759,425 + +0.4
759,449 + +0.9
759,671 - +0.1
759,692 + +0.6
759,769 + TX73_003535 0.15 +0.0
759,778 + TX73_003535 0.15 -0.4
759,791 - TX73_003535 0.16 +0.4
759,824 + TX73_003535 0.19 -0.8
760,066 - TX73_003535 0.41 -0.4
760,139 - TX73_003535 0.47 -0.5
760,271 - TX73_003535 0.59 -0.6
760,293 + TX73_003535 0.61 +0.2
760,344 - TX73_003535 0.66 +0.1
760,344 - TX73_003535 0.66 -0.4
760,363 + TX73_003535 0.67 -0.2
760,384 - TX73_003535 0.69 -1.8
760,387 - TX73_003535 0.69 -0.2
760,390 + TX73_003535 0.70 +0.2
760,455 - TX73_003535 0.75 -0.6
760,528 + TX73_003535 0.82 +1.1

Or see this region's nucleotide sequence