Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_019650

Experiment: PM with argon and bicarbonate 60 mM and Sodium thiosulfate 30 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_019635 and TX73_019640 are separated by 5 nucleotidesTX73_019640 and TX73_019645 are separated by 61 nucleotidesTX73_019645 and TX73_019650 are separated by 148 nucleotidesTX73_019650 and TX73_019655 are separated by 99 nucleotidesTX73_019655 and TX73_019660 are separated by 11 nucleotides TX73_019635: TX73_019635 - hypothetical protein, at 4,291,463 to 4,291,639 _019635 TX73_019640: TX73_019640 - DUF2000 family protein, at 4,291,645 to 4,292,055 _019640 TX73_019645: TX73_019645 - DUF4189 domain-containing protein, at 4,292,117 to 4,292,461 _019645 TX73_019650: TX73_019650 - enoyl-CoA hydratase-related protein, at 4,292,610 to 4,293,362 _019650 TX73_019655: TX73_019655 - LysR family transcriptional regulator, at 4,293,462 to 4,294,292 _019655 TX73_019660: TX73_019660 - molybdopterin-binding/glycosyltransferase family 2 protein, at 4,294,304 to 4,295,905 _019660 Position (kb) 4292 4293 4294Strain fitness (log2 ratio) -2 -1 0 1at 4291.625 kb on - strandat 4291.686 kb on - strand, within TX73_019640at 4291.704 kb on + strand, within TX73_019640at 4291.704 kb on - strand, within TX73_019640at 4291.750 kb on - strand, within TX73_019640at 4291.786 kb on - strand, within TX73_019640at 4291.786 kb on - strand, within TX73_019640at 4291.786 kb on - strand, within TX73_019640at 4291.786 kb on - strand, within TX73_019640at 4291.803 kb on - strand, within TX73_019640at 4291.833 kb on + strand, within TX73_019640at 4291.833 kb on + strand, within TX73_019640at 4291.841 kb on - strand, within TX73_019640at 4291.854 kb on - strand, within TX73_019640at 4291.860 kb on - strand, within TX73_019640at 4292.079 kb on - strandat 4292.099 kb on + strandat 4292.101 kb on + strandat 4292.101 kb on + strandat 4292.101 kb on + strandat 4292.101 kb on + strandat 4292.101 kb on + strandat 4292.101 kb on + strandat 4292.101 kb on + strandat 4292.101 kb on + strandat 4292.107 kb on - strandat 4292.109 kb on - strandat 4292.109 kb on - strandat 4292.120 kb on + strandat 4292.158 kb on - strand, within TX73_019645at 4292.188 kb on - strand, within TX73_019645at 4292.201 kb on - strand, within TX73_019645at 4292.231 kb on + strand, within TX73_019645at 4292.232 kb on - strand, within TX73_019645at 4292.234 kb on - strand, within TX73_019645at 4292.241 kb on + strand, within TX73_019645at 4292.297 kb on - strand, within TX73_019645at 4292.360 kb on + strand, within TX73_019645at 4292.380 kb on - strand, within TX73_019645at 4292.420 kb on - strand, within TX73_019645at 4292.453 kb on - strandat 4292.469 kb on + strandat 4292.549 kb on + strandat 4292.589 kb on + strandat 4292.597 kb on - strandat 4292.597 kb on - strandat 4292.608 kb on + strandat 4292.684 kb on - strandat 4292.696 kb on + strand, within TX73_019650at 4292.697 kb on + strand, within TX73_019650at 4292.704 kb on - strand, within TX73_019650at 4292.724 kb on + strand, within TX73_019650at 4292.733 kb on - strand, within TX73_019650at 4292.739 kb on + strand, within TX73_019650at 4292.747 kb on - strand, within TX73_019650at 4292.747 kb on - strand, within TX73_019650at 4292.750 kb on + strand, within TX73_019650at 4292.780 kb on - strand, within TX73_019650at 4292.784 kb on - strand, within TX73_019650at 4292.829 kb on + strand, within TX73_019650at 4292.829 kb on - strand, within TX73_019650at 4292.838 kb on - strand, within TX73_019650at 4292.869 kb on - strand, within TX73_019650at 4292.880 kb on + strand, within TX73_019650at 4292.880 kb on + strand, within TX73_019650at 4292.888 kb on - strand, within TX73_019650at 4292.897 kb on + strand, within TX73_019650at 4292.898 kb on + strand, within TX73_019650at 4292.901 kb on - strand, within TX73_019650at 4292.906 kb on - strand, within TX73_019650at 4292.916 kb on + strand, within TX73_019650at 4292.924 kb on - strand, within TX73_019650at 4292.980 kb on + strand, within TX73_019650at 4292.980 kb on + strand, within TX73_019650at 4292.980 kb on + strand, within TX73_019650at 4292.980 kb on + strand, within TX73_019650at 4292.988 kb on - strand, within TX73_019650at 4292.988 kb on - strand, within TX73_019650at 4293.009 kb on - strand, within TX73_019650at 4293.074 kb on - strand, within TX73_019650at 4293.135 kb on + strand, within TX73_019650at 4293.148 kb on - strand, within TX73_019650at 4293.155 kb on - strand, within TX73_019650at 4293.175 kb on - strand, within TX73_019650at 4293.179 kb on - strand, within TX73_019650at 4293.195 kb on - strand, within TX73_019650at 4293.195 kb on - strand, within TX73_019650at 4293.246 kb on - strand, within TX73_019650at 4293.263 kb on + strand, within TX73_019650at 4293.357 kb on - strandat 4293.357 kb on - strandat 4293.420 kb on - strandat 4293.508 kb on + strandat 4293.508 kb on + strandat 4293.511 kb on - strandat 4293.513 kb on + strandat 4293.516 kb on - strandat 4293.521 kb on - strandat 4293.574 kb on - strand, within TX73_019655at 4293.575 kb on - strand, within TX73_019655at 4293.635 kb on + strand, within TX73_019655at 4293.672 kb on + strand, within TX73_019655at 4293.672 kb on + strand, within TX73_019655at 4293.680 kb on - strand, within TX73_019655at 4293.680 kb on - strand, within TX73_019655at 4293.680 kb on - strand, within TX73_019655at 4293.683 kb on - strand, within TX73_019655at 4293.688 kb on - strand, within TX73_019655at 4293.733 kb on + strand, within TX73_019655at 4293.807 kb on - strand, within TX73_019655at 4293.887 kb on + strand, within TX73_019655at 4293.922 kb on - strand, within TX73_019655at 4293.963 kb on - strand, within TX73_019655at 4293.965 kb on + strand, within TX73_019655at 4293.970 kb on + strand, within TX73_019655at 4293.978 kb on - strand, within TX73_019655at 4293.983 kb on - strand, within TX73_019655at 4294.021 kb on + strand, within TX73_019655at 4294.026 kb on - strand, within TX73_019655at 4294.036 kb on - strand, within TX73_019655at 4294.049 kb on + strand, within TX73_019655at 4294.049 kb on + strand, within TX73_019655at 4294.057 kb on - strand, within TX73_019655at 4294.062 kb on - strand, within TX73_019655at 4294.065 kb on - strand, within TX73_019655at 4294.070 kb on + strand, within TX73_019655at 4294.203 kb on - strand, within TX73_019655at 4294.223 kb on + strandat 4294.223 kb on + strandat 4294.277 kb on + strandat 4294.296 kb on - strandat 4294.310 kb on + strandat 4294.352 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PM with argon and bicarbonate 60 mM and Sodium thiosulfate 30 mM
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4,291,625 - +0.5
4,291,686 - TX73_019640 0.10 -0.1
4,291,704 + TX73_019640 0.14 +0.2
4,291,704 - TX73_019640 0.14 +0.2
4,291,750 - TX73_019640 0.26 +0.4
4,291,786 - TX73_019640 0.34 +0.7
4,291,786 - TX73_019640 0.34 -0.6
4,291,786 - TX73_019640 0.34 -0.7
4,291,786 - TX73_019640 0.34 +0.3
4,291,803 - TX73_019640 0.38 +0.2
4,291,833 + TX73_019640 0.46 -0.1
4,291,833 + TX73_019640 0.46 +0.2
4,291,841 - TX73_019640 0.48 +0.1
4,291,854 - TX73_019640 0.51 -0.4
4,291,860 - TX73_019640 0.52 -0.2
4,292,079 - -1.0
4,292,099 + -0.1
4,292,101 + +0.3
4,292,101 + +0.7
4,292,101 + -0.3
4,292,101 + -0.2
4,292,101 + -0.0
4,292,101 + -1.1
4,292,101 + +0.3
4,292,101 + -0.1
4,292,107 - -0.2
4,292,109 - -1.6
4,292,109 - +0.4
4,292,120 + +0.2
4,292,158 - TX73_019645 0.12 +0.8
4,292,188 - TX73_019645 0.21 +0.7
4,292,201 - TX73_019645 0.24 +0.9
4,292,231 + TX73_019645 0.33 +0.3
4,292,232 - TX73_019645 0.33 -0.2
4,292,234 - TX73_019645 0.34 -1.5
4,292,241 + TX73_019645 0.36 -0.6
4,292,297 - TX73_019645 0.52 -1.4
4,292,360 + TX73_019645 0.70 -0.1
4,292,380 - TX73_019645 0.76 -0.3
4,292,420 - TX73_019645 0.88 +1.2
4,292,453 - +0.4
4,292,469 + +0.7
4,292,549 + -0.9
4,292,589 + -2.4
4,292,597 - -0.9
4,292,597 - -0.6
4,292,608 + -1.5
4,292,684 - +0.5
4,292,696 + TX73_019650 0.11 -0.6
4,292,697 + TX73_019650 0.12 +0.5
4,292,704 - TX73_019650 0.12 +0.0
4,292,724 + TX73_019650 0.15 -0.8
4,292,733 - TX73_019650 0.16 -0.6
4,292,739 + TX73_019650 0.17 +0.2
4,292,747 - TX73_019650 0.18 -2.5
4,292,747 - TX73_019650 0.18 +0.8
4,292,750 + TX73_019650 0.19 -0.4
4,292,780 - TX73_019650 0.23 -0.4
4,292,784 - TX73_019650 0.23 -0.5
4,292,829 + TX73_019650 0.29 -0.2
4,292,829 - TX73_019650 0.29 +0.9
4,292,838 - TX73_019650 0.30 -0.4
4,292,869 - TX73_019650 0.34 +0.7
4,292,880 + TX73_019650 0.36 +0.4
4,292,880 + TX73_019650 0.36 -0.6
4,292,888 - TX73_019650 0.37 -0.3
4,292,897 + TX73_019650 0.38 -1.5
4,292,898 + TX73_019650 0.38 +0.8
4,292,901 - TX73_019650 0.39 +0.1
4,292,906 - TX73_019650 0.39 -0.5
4,292,916 + TX73_019650 0.41 +0.2
4,292,924 - TX73_019650 0.42 -1.3
4,292,980 + TX73_019650 0.49 +0.6
4,292,980 + TX73_019650 0.49 -1.0
4,292,980 + TX73_019650 0.49 +0.4
4,292,980 + TX73_019650 0.49 +0.5
4,292,988 - TX73_019650 0.50 -0.8
4,292,988 - TX73_019650 0.50 +0.7
4,293,009 - TX73_019650 0.53 -0.1
4,293,074 - TX73_019650 0.62 +0.5
4,293,135 + TX73_019650 0.70 -0.3
4,293,148 - TX73_019650 0.71 +0.2
4,293,155 - TX73_019650 0.72 -0.0
4,293,175 - TX73_019650 0.75 -0.0
4,293,179 - TX73_019650 0.76 +0.2
4,293,195 - TX73_019650 0.78 +0.3
4,293,195 - TX73_019650 0.78 -0.5
4,293,246 - TX73_019650 0.84 -0.6
4,293,263 + TX73_019650 0.87 -0.2
4,293,357 - +0.1
4,293,357 - -1.3
4,293,420 - +0.3
4,293,508 + -0.1
4,293,508 + -0.6
4,293,511 - -0.2
4,293,513 + +1.3
4,293,516 - -0.4
4,293,521 - +0.3
4,293,574 - TX73_019655 0.13 +0.6
4,293,575 - TX73_019655 0.14 +0.2
4,293,635 + TX73_019655 0.21 -0.1
4,293,672 + TX73_019655 0.25 +0.6
4,293,672 + TX73_019655 0.25 +0.0
4,293,680 - TX73_019655 0.26 -0.5
4,293,680 - TX73_019655 0.26 -0.3
4,293,680 - TX73_019655 0.26 -0.8
4,293,683 - TX73_019655 0.27 +0.4
4,293,688 - TX73_019655 0.27 -1.1
4,293,733 + TX73_019655 0.33 +0.5
4,293,807 - TX73_019655 0.42 -0.0
4,293,887 + TX73_019655 0.51 +0.1
4,293,922 - TX73_019655 0.55 -1.3
4,293,963 - TX73_019655 0.60 -1.7
4,293,965 + TX73_019655 0.61 -0.8
4,293,970 + TX73_019655 0.61 +1.4
4,293,978 - TX73_019655 0.62 +0.9
4,293,983 - TX73_019655 0.63 +0.2
4,294,021 + TX73_019655 0.67 -0.5
4,294,026 - TX73_019655 0.68 +0.8
4,294,036 - TX73_019655 0.69 -0.5
4,294,049 + TX73_019655 0.71 +0.0
4,294,049 + TX73_019655 0.71 -0.6
4,294,057 - TX73_019655 0.72 +0.1
4,294,062 - TX73_019655 0.72 +0.1
4,294,065 - TX73_019655 0.73 -0.3
4,294,070 + TX73_019655 0.73 +0.0
4,294,203 - TX73_019655 0.89 -0.2
4,294,223 + +0.3
4,294,223 + -0.1
4,294,277 + -0.4
4,294,296 - -1.2
4,294,310 + +0.9
4,294,352 + -0.4

Or see this region's nucleotide sequence