Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_011390

Experiment: PM with butyrate aerobic in dark

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with butyrate aerobic in dark
2,483,203	-		TX73_011375	0.89	-1.1
2,483,220	-				-2.4
2,483,220	-				-1.5
2,483,247	+				+1.4
2,483,284	-				-1.6
2,483,320	+				-0.8
2,483,320	+				+0.0
2,483,361	+		TX73_011380	0.15	+0.4
2,483,361	-		TX73_011380	0.15	-1.2
2,483,362	-		TX73_011380	0.16	-0.7
2,483,369	+		TX73_011380	0.18	-0.4
2,483,377	-		TX73_011380	0.21	-0.8
2,483,400	+		TX73_011380	0.29	-1.3
2,483,410	+		TX73_011380	0.32	+0.1
2,483,441	-		TX73_011380	0.43	-0.8
2,483,451	+		TX73_011380	0.46	-0.0
2,483,456	+		TX73_011380	0.48	+0.0
2,483,456	+		TX73_011380	0.48	+0.5
2,483,456	+		TX73_011380	0.48	-0.1
2,483,459	+		TX73_011380	0.49	-0.3
2,483,459	-		TX73_011380	0.49	+0.4
2,483,461	+		TX73_011380	0.50	-1.9
2,483,464	-		TX73_011380	0.51	-0.7
2,483,466	+		TX73_011380	0.52	-3.7
2,483,466	+		TX73_011380	0.52	-0.5
2,483,467	-		TX73_011380	0.52	-0.1
2,483,473	-		TX73_011380	0.54	-0.6
2,483,477	+		TX73_011380	0.55	+0.2
2,483,507	+		TX73_011380	0.66	-0.1
2,483,549	+		TX73_011380	0.80	-0.3
2,483,596	-				-0.1
2,483,621	-				-0.3
2,483,682	+				+0.6
2,483,696	-				+1.2
2,483,727	+				-0.6
2,483,743	+				-0.9
2,483,744	+				+1.0
2,483,746	-				-1.0
2,483,751	-				-2.0
2,483,754	+				-1.4
2,483,758	-				-0.1
2,483,813	+		TX73_011385	0.17	+0.5
2,483,821	-		TX73_011385	0.19	+0.7
2,483,878	+		TX73_011385	0.34	-0.5
2,483,886	-		TX73_011385	0.36	-0.9
2,483,886	-		TX73_011385	0.36	-0.6
2,483,896	+		TX73_011385	0.39	+0.2
2,483,945	-		TX73_011385	0.52	-0.1
2,483,950	-		TX73_011385	0.53	-0.3
2,483,967	+		TX73_011385	0.58	+0.5
2,483,967	+		TX73_011385	0.58	+0.7
2,483,977	-		TX73_011385	0.60	+0.8
2,483,977	-		TX73_011385	0.60	+1.1
2,483,985	+		TX73_011385	0.62	-0.7
2,483,985	+		TX73_011385	0.62	+0.9
2,483,987	+		TX73_011385	0.63	+1.0
2,483,995	-		TX73_011385	0.65	+0.4
2,483,995	-		TX73_011385	0.65	-0.9
2,483,995	-		TX73_011385	0.65	-1.4
2,483,997	-		TX73_011385	0.66	-0.5
2,484,028	-		TX73_011385	0.74	+0.7
2,484,050	+		TX73_011385	0.80	+0.6
2,484,059	+		TX73_011385	0.82	-1.3
2,484,068	-		TX73_011385	0.84	+0.4
2,484,179	+				+1.1
2,484,200	+				-1.1
2,484,208	-				-0.6
2,484,208	-				+0.0
2,484,214	+				+0.0
2,484,225	+				-0.8
2,484,233	-				-0.7
2,484,260	+				-0.5
2,484,265	+				+0.1
2,484,274	+				-2.1
2,484,359	+				-1.6
2,484,405	-		TX73_011390	0.13	+1.6
2,484,419	+		TX73_011390	0.14	+0.8
2,484,422	-		TX73_011390	0.14	-0.6
2,484,436	+		TX73_011390	0.15	-1.1
2,484,479	+		TX73_011390	0.18	-1.3
2,484,517	-		TX73_011390	0.20	-0.0
2,484,560	+		TX73_011390	0.23	-1.3
2,484,560	+		TX73_011390	0.23	-1.7
2,484,565	+		TX73_011390	0.23	+0.2
2,484,568	-		TX73_011390	0.23	-0.3
2,484,568	-		TX73_011390	0.23	-1.5
2,484,572	+		TX73_011390	0.24	-1.1
2,484,573	-		TX73_011390	0.24	-0.3
2,484,587	+		TX73_011390	0.24	-1.7
2,484,611	+		TX73_011390	0.26	+0.2
2,484,619	-		TX73_011390	0.27	-1.3
2,484,629	-		TX73_011390	0.27	-0.8
2,484,641	+		TX73_011390	0.28	-1.4
2,484,651	+		TX73_011390	0.29	+0.1
2,484,651	+		TX73_011390	0.29	-0.3
2,484,678	-		TX73_011390	0.30	+0.4
2,484,685	+		TX73_011390	0.31	-2.6
2,484,693	-		TX73_011390	0.31	-0.7
2,484,693	-		TX73_011390	0.31	+0.6
2,484,709	+		TX73_011390	0.32	-0.6
2,484,750	-		TX73_011390	0.35	+0.1
2,484,769	+		TX73_011390	0.36	+0.4
2,484,769	+		TX73_011390	0.36	-0.4
2,484,769	+		TX73_011390	0.36	+0.3
2,484,777	-		TX73_011390	0.37	+1.2
2,484,777	-		TX73_011390	0.37	+0.8
2,484,786	+		TX73_011390	0.37	-0.9
2,484,796	+		TX73_011390	0.38	-1.5
2,484,802	-		TX73_011390	0.38	-0.0
2,484,802	-		TX73_011390	0.38	-2.4
2,484,831	+		TX73_011390	0.40	+0.4
2,484,831	+		TX73_011390	0.40	+0.3
2,484,839	-		TX73_011390	0.41	-1.1
2,484,839	-		TX73_011390	0.41	-1.1
2,484,839	-		TX73_011390	0.41	+0.6
2,484,840	+		TX73_011390	0.41	-1.2
2,484,840	+		TX73_011390	0.41	+0.6
2,484,844	-		TX73_011390	0.41	-0.7
2,484,850	+		TX73_011390	0.41	-0.3
2,484,850	+		TX73_011390	0.41	-0.8
2,484,850	+		TX73_011390	0.41	+0.1
2,484,892	+		TX73_011390	0.44	+0.5
2,484,922	+		TX73_011390	0.46	+0.3
2,484,937	-		TX73_011390	0.47	+0.8
2,484,943	+		TX73_011390	0.47	-2.5
2,485,057	+		TX73_011390	0.54	-0.6
2,485,058	+		TX73_011390	0.54	-0.9
2,485,082	-		TX73_011390	0.56	-1.0
2,485,091	+		TX73_011390	0.57	-2.5
2,485,146	+		TX73_011390	0.60	-0.1
2,485,165	+		TX73_011390	0.61	+0.4
2,485,176	+		TX73_011390	0.62	-0.4
2,485,195	+		TX73_011390	0.63	-0.0
2,485,202	+		TX73_011390	0.64	-0.9
2,485,202	+		TX73_011390	0.64	-1.9
2,485,205	-		TX73_011390	0.64	-2.7
2,485,219	+		TX73_011390	0.65	+1.5
2,485,228	-		TX73_011390	0.65	+0.3
2,485,262	-		TX73_011390	0.67	+0.3
2,485,327	-		TX73_011390	0.72	-0.2
2,485,333	+		TX73_011390	0.72	-0.2
2,485,352	+		TX73_011390	0.73	+0.3
2,485,362	+		TX73_011390	0.74	-2.1
2,485,402	+		TX73_011390	0.76	-2.0
2,485,449	-		TX73_011390	0.79	-0.8
2,485,508	+		TX73_011390	0.83	-0.4
2,485,513	+		TX73_011390	0.83	+0.3
2,485,566	+		TX73_011390	0.87	-0.1
2,485,646	-				+0.2
2,485,684	-				-1.4
2,485,708	+				-1.0
2,485,709	+				+0.8
2,485,751	+				-1.1
2,485,759	-				-1.4
2,485,798	+				-0.8
2,485,806	-				-0.6
2,485,826	+				-0.5
2,485,863	+		TX73_011395	0.11	+0.6
2,485,866	+		TX73_011395	0.11	-0.2
2,485,871	-		TX73_011395	0.12	+0.3
2,485,890	+		TX73_011395	0.14	+0.7
2,485,907	-		TX73_011395	0.16	+0.4
2,485,910	+		TX73_011395	0.16	-0.4
2,485,916	-		TX73_011395	0.17	-0.6
2,485,949	-		TX73_011395	0.20	-0.4
2,485,949	-		TX73_011395	0.20	+0.8
2,485,953	+		TX73_011395	0.21	+1.3
2,486,033	-		TX73_011395	0.30	+0.3
2,486,035	+		TX73_011395	0.30	-0.7
2,486,054	+		TX73_011395	0.32	-0.8
2,486,055	-		TX73_011395	0.32	-1.1
2,486,065	+		TX73_011395	0.34	+0.9
2,486,068	+		TX73_011395	0.34	-0.6
2,486,068	+		TX73_011395	0.34	+1.5
2,486,203	-		TX73_011395	0.49	-0.2
2,486,247	-		TX73_011395	0.54	-1.1
2,486,302	+		TX73_011395	0.60	-1.3
2,486,315	-		TX73_011395	0.62	+0.0
2,486,320	-		TX73_011395	0.62	+0.2
2,486,360	+		TX73_011395	0.67	-0.2
2,486,368	-		TX73_011395	0.68	-1.5
2,486,384	-		TX73_011395	0.70	+0.1
2,486,423	+		TX73_011395	0.74	-0.2
2,486,445	-		TX73_011395	0.76	+0.1
2,486,446	+		TX73_011395	0.77	+0.5
2,486,459	-		TX73_011395	0.78	+0.2
2,486,466	+		TX73_011395	0.79	-2.6
2,486,591	+				-0.6
2,486,598	+				-0.0
2,486,601	-				+0.4
2,486,631	+				-0.6
2,486,639	-				-0.8
2,486,646	+				-1.1
2,486,646	+				-0.7
2,486,646	+				+0.9
2,486,736	+				+0.1
2,486,736	+				-1.5
2,486,746	+		TX73_011400	0.10	+0.3