Experiment: PM with butyrate aerobic in dark
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_000585 and TX73_000590 are separated by 123 nucleotides TX73_000590 and TX73_000595 are separated by 387 nucleotides TX73_000595 and TX73_000600 overlap by 1 nucleotides TX73_000600 and TX73_000605 overlap by 5 nucleotides TX73_000605 and TX73_000610 are separated by 25 nucleotides TX73_000610 and TX73_000615 are separated by 4 nucleotides
TX73_000585: TX73_000585 - FAD-binding oxidoreductase, at 130,028 to 131,422
_000585
TX73_000590: TX73_000590 - hypothetical protein, at 131,546 to 131,854
_000590
TX73_000595: TX73_000595 - NAD-dependent epimerase/dehydratase family protein, at 132,242 to 132,388
_000595
TX73_000600: TX73_000600 - GDP-mannose 4,6-dehydratase, at 132,388 to 132,906
_000600
TX73_000605: TX73_000605 - GDP-mannose 4,6-dehydratase, at 132,902 to 133,303
_000605
TX73_000610: TX73_000610 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 133,329 to 133,886
_000610
TX73_000615: TX73_000615 - dTDP-4-dehydrorhamnose reductase, at 133,891 to 134,784
_000615
Position (kb) 132
133 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 131.402 kb on - strand at 131.417 kb on + strand at 131.435 kb on - strand at 131.435 kb on - strand at 131.483 kb on - strand at 131.553 kb on + strand at 131.553 kb on + strand at 131.588 kb on - strand, within TX73_000590 at 131.591 kb on + strand, within TX73_000590 at 131.611 kb on + strand, within TX73_000590 at 131.623 kb on + strand, within TX73_000590 at 131.624 kb on + strand, within TX73_000590 at 131.640 kb on + strand, within TX73_000590 at 131.643 kb on + strand, within TX73_000590 at 131.657 kb on + strand, within TX73_000590 at 131.677 kb on - strand, within TX73_000590 at 131.691 kb on + strand, within TX73_000590 at 131.696 kb on + strand, within TX73_000590 at 131.718 kb on + strand, within TX73_000590 at 131.725 kb on - strand, within TX73_000590 at 131.726 kb on - strand, within TX73_000590 at 131.726 kb on - strand, within TX73_000590 at 131.726 kb on - strand, within TX73_000590 at 131.778 kb on + strand, within TX73_000590 at 131.781 kb on - strand, within TX73_000590 at 131.782 kb on - strand, within TX73_000590 at 131.806 kb on - strand, within TX73_000590 at 131.848 kb on + strand at 131.864 kb on + strand at 131.872 kb on - strand at 131.876 kb on - strand at 131.884 kb on + strand at 131.891 kb on - strand at 131.923 kb on + strand at 131.923 kb on + strand at 131.925 kb on - strand at 131.931 kb on + strand at 131.943 kb on + strand at 131.948 kb on + strand at 131.956 kb on - strand at 131.956 kb on - strand at 132.044 kb on + strand at 132.110 kb on + strand at 132.117 kb on + strand at 132.117 kb on + strand at 132.118 kb on - strand at 132.120 kb on - strand at 132.129 kb on + strand at 132.135 kb on - strand at 132.136 kb on - strand at 132.137 kb on - strand at 132.144 kb on + strand at 132.159 kb on + strand at 132.164 kb on + strand at 132.167 kb on - strand at 132.169 kb on + strand at 132.170 kb on - strand at 132.172 kb on - strand at 132.193 kb on + strand at 132.193 kb on + strand at 132.198 kb on + strand at 132.201 kb on - strand at 132.201 kb on - strand at 132.201 kb on - strand at 132.201 kb on - strand at 132.206 kb on - strand at 132.212 kb on - strand at 132.217 kb on - strand at 132.234 kb on + strand at 132.246 kb on - strand at 132.285 kb on + strand, within TX73_000595 at 132.293 kb on - strand, within TX73_000595 at 132.293 kb on - strand, within TX73_000595 at 132.293 kb on - strand, within TX73_000595 at 132.293 kb on - strand, within TX73_000595 at 132.303 kb on - strand, within TX73_000595 at 132.307 kb on + strand, within TX73_000595 at 132.312 kb on + strand, within TX73_000595 at 132.315 kb on - strand, within TX73_000595 at 132.316 kb on - strand, within TX73_000595 at 132.320 kb on - strand, within TX73_000595 at 132.331 kb on - strand, within TX73_000595 at 132.337 kb on - strand, within TX73_000595 at 132.344 kb on + strand, within TX73_000595 at 132.394 kb on + strand at 132.394 kb on + strand at 132.400 kb on - strand at 132.402 kb on - strand at 132.405 kb on + strand at 132.418 kb on + strand at 132.425 kb on + strand at 132.425 kb on + strand at 132.426 kb on - strand at 132.426 kb on - strand at 132.431 kb on + strand at 132.433 kb on - strand at 132.433 kb on - strand at 132.433 kb on - strand at 132.439 kb on - strand at 132.463 kb on + strand, within TX73_000600 at 132.465 kb on + strand, within TX73_000600 at 132.471 kb on - strand, within TX73_000600 at 132.510 kb on + strand, within TX73_000600 at 132.512 kb on + strand, within TX73_000600 at 132.518 kb on + strand, within TX73_000600 at 132.525 kb on - strand, within TX73_000600 at 132.530 kb on + strand, within TX73_000600 at 132.534 kb on + strand, within TX73_000600 at 132.542 kb on - strand, within TX73_000600 at 132.551 kb on - strand, within TX73_000600 at 132.561 kb on + strand, within TX73_000600 at 132.569 kb on - strand, within TX73_000600 at 132.609 kb on + strand, within TX73_000600 at 132.612 kb on + strand, within TX73_000600 at 132.617 kb on + strand, within TX73_000600 at 132.620 kb on - strand, within TX73_000600 at 132.628 kb on + strand, within TX73_000600 at 132.634 kb on - strand, within TX73_000600 at 132.651 kb on - strand, within TX73_000600 at 132.652 kb on - strand, within TX73_000600 at 132.686 kb on + strand, within TX73_000600 at 132.750 kb on + strand, within TX73_000600 at 132.753 kb on - strand, within TX73_000600 at 132.758 kb on - strand, within TX73_000600 at 132.781 kb on + strand, within TX73_000600 at 132.829 kb on - strand, within TX73_000600 at 132.851 kb on - strand, within TX73_000600 at 132.858 kb on + strand at 132.858 kb on + strand at 132.866 kb on - strand at 132.874 kb on - strand at 132.881 kb on + strand at 132.889 kb on - strand at 132.889 kb on - strand at 133.026 kb on - strand, within TX73_000605 at 133.080 kb on + strand, within TX73_000605 at 133.164 kb on - strand, within TX73_000605 at 133.215 kb on - strand, within TX73_000605 at 133.230 kb on - strand, within TX73_000605 at 133.260 kb on + strand, within TX73_000605 at 133.260 kb on + strand, within TX73_000605 at 133.265 kb on + strand at 133.268 kb on - strand at 133.268 kb on - strand at 133.268 kb on - strand at 133.342 kb on + strand at 133.385 kb on - strand, within TX73_000610 at 133.426 kb on - strand, within TX73_000610 at 133.523 kb on - strand, within TX73_000610 at 133.541 kb on + strand, within TX73_000610 at 133.549 kb on - strand, within TX73_000610 at 133.608 kb on - strand, within TX73_000610 at 133.620 kb on - strand, within TX73_000610 at 133.770 kb on + strand, within TX73_000610 at 133.770 kb on + strand, within TX73_000610 at 133.770 kb on + strand, within TX73_000610 at 133.788 kb on - strand, within TX73_000610 at 133.804 kb on - strand, within TX73_000610 at 133.899 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PM with butyrate aerobic in dark remove 131,402 - -0.2 131,417 + -1.1 131,435 - +1.4 131,435 - +0.2 131,483 - +0.5 131,553 + -1.2 131,553 + +0.8 131,588 - TX73_000590 0.14 +0.3 131,591 + TX73_000590 0.15 -1.1 131,611 + TX73_000590 0.21 +0.7 131,623 + TX73_000590 0.25 +0.6 131,624 + TX73_000590 0.25 +0.0 131,640 + TX73_000590 0.30 +0.9 131,643 + TX73_000590 0.31 -1.4 131,657 + TX73_000590 0.36 +0.3 131,677 - TX73_000590 0.42 +0.3 131,691 + TX73_000590 0.47 -0.0 131,696 + TX73_000590 0.49 +0.2 131,718 + TX73_000590 0.56 +0.4 131,725 - TX73_000590 0.58 -1.0 131,726 - TX73_000590 0.58 -1.5 131,726 - TX73_000590 0.58 -2.4 131,726 - TX73_000590 0.58 -1.0 131,778 + TX73_000590 0.75 -0.6 131,781 - TX73_000590 0.76 -1.2 131,782 - TX73_000590 0.76 +0.6 131,806 - TX73_000590 0.84 +1.4 131,848 + +0.3 131,864 + +0.3 131,872 - -0.9 131,876 - -1.6 131,884 + -0.7 131,891 - -0.2 131,923 + -0.2 131,923 + -0.5 131,925 - +0.0 131,931 + -0.8 131,943 + +0.3 131,948 + +1.0 131,956 - +1.3 131,956 - +0.7 132,044 + +1.1 132,110 + +0.2 132,117 + +0.1 132,117 + -0.3 132,118 - +0.1 132,120 - +0.7 132,129 + +0.9 132,135 - +0.5 132,136 - -0.8 132,137 - -1.6 132,144 + -1.6 132,159 + -1.5 132,164 + -0.1 132,167 - -0.2 132,169 + +0.3 132,170 - +0.7 132,172 - +1.3 132,193 + +0.7 132,193 + +1.1 132,198 + +0.4 132,201 - +0.6 132,201 - +0.8 132,201 - +0.6 132,201 - -0.6 132,206 - -0.5 132,212 - +1.5 132,217 - +0.7 132,234 + -0.7 132,246 - -0.6 132,285 + TX73_000595 0.29 +0.1 132,293 - TX73_000595 0.35 -0.6 132,293 - TX73_000595 0.35 -0.2 132,293 - TX73_000595 0.35 +0.6 132,293 - TX73_000595 0.35 -0.0 132,303 - TX73_000595 0.41 +0.7 132,307 + TX73_000595 0.44 +0.5 132,312 + TX73_000595 0.48 +1.1 132,315 - TX73_000595 0.50 -1.0 132,316 - TX73_000595 0.50 +1.0 132,320 - TX73_000595 0.53 -0.1 132,331 - TX73_000595 0.61 +0.6 132,337 - TX73_000595 0.65 +0.6 132,344 + TX73_000595 0.69 -1.8 132,394 + -0.7 132,394 + -0.3 132,400 - +0.3 132,402 - +0.4 132,405 + -0.2 132,418 + +1.1 132,425 + -1.0 132,425 + +0.1 132,426 - -1.3 132,426 - +1.1 132,431 + +0.2 132,433 - -1.3 132,433 - -0.4 132,433 - -3.0 132,439 - -0.2 132,463 + TX73_000600 0.14 -0.0 132,465 + TX73_000600 0.15 -0.8 132,471 - TX73_000600 0.16 -1.0 132,510 + TX73_000600 0.24 -0.6 132,512 + TX73_000600 0.24 +0.7 132,518 + TX73_000600 0.25 -2.2 132,525 - TX73_000600 0.26 -1.6 132,530 + TX73_000600 0.27 -1.5 132,534 + TX73_000600 0.28 +0.5 132,542 - TX73_000600 0.30 +0.5 132,551 - TX73_000600 0.31 +0.5 132,561 + TX73_000600 0.33 +0.6 132,569 - TX73_000600 0.35 +0.9 132,609 + TX73_000600 0.43 +0.5 132,612 + TX73_000600 0.43 +0.0 132,617 + TX73_000600 0.44 +0.8 132,620 - TX73_000600 0.45 +1.3 132,628 + TX73_000600 0.46 -0.6 132,634 - TX73_000600 0.47 +0.0 132,651 - TX73_000600 0.51 +0.4 132,652 - TX73_000600 0.51 +0.2 132,686 + TX73_000600 0.57 -1.3 132,750 + TX73_000600 0.70 +0.3 132,753 - TX73_000600 0.70 -0.5 132,758 - TX73_000600 0.71 +0.0 132,781 + TX73_000600 0.76 +0.8 132,829 - TX73_000600 0.85 -1.4 132,851 - TX73_000600 0.89 +0.0 132,858 + -1.2 132,858 + +0.1 132,866 - +0.3 132,874 - +0.6 132,881 + +0.2 132,889 - +0.3 132,889 - -0.5 133,026 - TX73_000605 0.31 -0.1 133,080 + TX73_000605 0.44 +1.2 133,164 - TX73_000605 0.65 +0.5 133,215 - TX73_000605 0.78 -0.7 133,230 - TX73_000605 0.82 +0.9 133,260 + TX73_000605 0.89 -0.5 133,260 + TX73_000605 0.89 +1.0 133,265 + -2.4 133,268 - -0.0 133,268 - -1.8 133,268 - -0.0 133,342 + +2.3 133,385 - TX73_000610 0.10 -2.4 133,426 - TX73_000610 0.17 +0.5 133,523 - TX73_000610 0.35 -0.6 133,541 + TX73_000610 0.38 -0.9 133,549 - TX73_000610 0.39 -0.4 133,608 - TX73_000610 0.50 -0.8 133,620 - TX73_000610 0.52 -1.5 133,770 + TX73_000610 0.79 +0.9 133,770 + TX73_000610 0.79 -0.4 133,770 + TX73_000610 0.79 -2.1 133,788 - TX73_000610 0.82 -0.5 133,804 - TX73_000610 0.85 +0.2 133,899 - +0.8
Or see this region's nucleotide sequence