Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_007700

Experiment: PM with butyrate aerobic in dark

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with butyrate aerobic in dark
1,660,622	+		TX73_007695	0.18	-0.5
1,660,625	-		TX73_007695	0.18	+0.6
1,660,631	-		TX73_007695	0.19	+1.6
1,660,633	+		TX73_007695	0.19	+0.3
1,660,638	+		TX73_007695	0.20	+0.5
1,660,641	+		TX73_007695	0.20	-0.5
1,660,641	+		TX73_007695	0.20	+0.1
1,660,641	+		TX73_007695	0.20	-0.1
1,660,641	-		TX73_007695	0.20	+0.6
1,660,643	+		TX73_007695	0.20	-0.0
1,660,651	-		TX73_007695	0.21	-0.5
1,660,651	-		TX73_007695	0.21	+0.5
1,660,660	+		TX73_007695	0.21	-0.9
1,660,660	+		TX73_007695	0.21	-0.6
1,660,668	-		TX73_007695	0.22	-1.0
1,660,676	+		TX73_007695	0.23	+0.2
1,660,701	+		TX73_007695	0.25	+0.2
1,660,701	+		TX73_007695	0.25	-1.1
1,660,709	-		TX73_007695	0.26	+0.4
1,660,710	-		TX73_007695	0.26	-0.9
1,660,715	-		TX73_007695	0.26	-0.1
1,660,715	-		TX73_007695	0.26	-0.0
1,660,715	-		TX73_007695	0.26	+0.1
1,660,724	+		TX73_007695	0.27	+0.5
1,660,738	+		TX73_007695	0.28	-1.4
1,660,738	+		TX73_007695	0.28	+0.3
1,660,738	+		TX73_007695	0.28	+0.5
1,660,738	+		TX73_007695	0.28	-1.8
1,660,738	+		TX73_007695	0.28	-1.2
1,660,738	+		TX73_007695	0.28	+0.8
1,660,744	+		TX73_007695	0.28	+0.4
1,660,744	+		TX73_007695	0.28	-0.1
1,660,744	+		TX73_007695	0.28	-0.4
1,660,744	+		TX73_007695	0.28	-1.5
1,660,744	+		TX73_007695	0.28	-0.3
1,660,746	-		TX73_007695	0.29	-1.0
1,660,746	-		TX73_007695	0.29	-0.6
1,660,752	-		TX73_007695	0.29	-2.1
1,660,752	-		TX73_007695	0.29	+0.4
1,660,752	-		TX73_007695	0.29	-0.2
1,660,755	+		TX73_007695	0.29	-0.7
1,660,767	-		TX73_007695	0.30	+0.1
1,660,796	-		TX73_007695	0.33	-0.5
1,660,860	-		TX73_007695	0.38	-0.8
1,660,860	-		TX73_007695	0.38	-2.0
1,660,900	+		TX73_007695	0.41	-0.8
1,660,908	-		TX73_007695	0.42	-0.5
1,660,954	-		TX73_007695	0.46	+0.3
1,660,956	+		TX73_007695	0.46	+0.9
1,660,956	+		TX73_007695	0.46	-0.4
1,660,956	+		TX73_007695	0.46	-0.7
1,660,964	-		TX73_007695	0.47	-0.1
1,660,969	-		TX73_007695	0.47	+0.7
1,660,974	-		TX73_007695	0.48	-0.0
1,660,988	+		TX73_007695	0.49	-1.3
1,660,988	-		TX73_007695	0.49	-0.3
1,660,993	+		TX73_007695	0.49	-0.9
1,660,996	-		TX73_007695	0.49	-0.2
1,660,996	-		TX73_007695	0.49	+0.9
1,660,996	-		TX73_007695	0.49	-0.0
1,660,996	-		TX73_007695	0.49	-0.7
1,661,015	-		TX73_007695	0.51	+0.3
1,661,035	+		TX73_007695	0.53	-0.1
1,661,035	+		TX73_007695	0.53	+0.2
1,661,035	+		TX73_007695	0.53	+0.6
1,661,035	+		TX73_007695	0.53	-2.4
1,661,043	-		TX73_007695	0.53	-0.5
1,661,045	+		TX73_007695	0.54	+0.6
1,661,062	+		TX73_007695	0.55	+0.1
1,661,062	+		TX73_007695	0.55	+0.1
1,661,075	-		TX73_007695	0.56	-2.4
1,661,077	+		TX73_007695	0.56	+0.8
1,661,103	+		TX73_007695	0.58	-1.4
1,661,111	-		TX73_007695	0.59	+0.8
1,661,140	+		TX73_007695	0.61	+0.3
1,661,146	-		TX73_007695	0.62	-0.2
1,661,156	+		TX73_007695	0.63	-0.4
1,661,166	+		TX73_007695	0.64	+0.3
1,661,166	+		TX73_007695	0.64	+0.1
1,661,166	+		TX73_007695	0.64	-0.3
1,661,183	+		TX73_007695	0.65	-0.2
1,661,185	+		TX73_007695	0.65	-1.8
1,661,188	+		TX73_007695	0.65	-0.6
1,661,233	-		TX73_007695	0.69	+0.1
1,661,240	+		TX73_007695	0.70	-0.0
1,661,248	-		TX73_007695	0.70	-0.3
1,661,266	+		TX73_007695	0.72	+0.5
1,661,293	+		TX73_007695	0.74	+0.5
1,661,295	-		TX73_007695	0.74	+0.4
1,661,295	-		TX73_007695	0.74	-0.9
1,661,350	-		TX73_007695	0.79	+0.5
1,661,364	+		TX73_007695	0.80	-0.6
1,661,374	-		TX73_007695	0.81	-0.7
1,661,410	+		TX73_007695	0.84	-0.3
1,661,413	-		TX73_007695	0.84	-1.0
1,661,414	+		TX73_007695	0.84	+1.0
1,661,419	+		TX73_007695	0.85	-0.3
1,661,420	-		TX73_007695	0.85	+0.1
1,661,422	-		TX73_007695	0.85	-0.5
1,661,429	+		TX73_007695	0.85	+0.4
1,661,429	+		TX73_007695	0.85	+0.4
1,661,432	-		TX73_007695	0.86	+0.2
1,661,440	+		TX73_007695	0.86	-0.5
1,661,451	-		TX73_007695	0.87	-0.0
1,661,460	+		TX73_007695	0.88	-0.7
1,661,512	+				-0.1
1,661,516	-				-0.6
1,661,518	-				+0.5
1,661,528	-				-1.6
1,661,573	+				-0.4
1,661,640	+				-0.0
1,661,671	-				+0.4
1,661,699	+				-1.2
1,661,732	+				+0.3
1,661,762	-				+1.3
1,661,781	+				-0.5
1,661,781	+				-0.8
1,661,781	+				-0.9
1,661,789	-				-0.2
1,661,789	-				-0.8
1,661,789	-				-0.4
1,661,789	-				-1.2
1,661,794	+				+0.3
1,661,812	-				-0.2
1,661,822	-				+0.2
1,661,854	+				+0.9
1,661,854	+				+0.2
1,661,858	+				-0.6
1,661,862	-				-0.6
1,661,931	+		TX73_007700	0.10	+0.1
1,661,931	+		TX73_007700	0.10	-0.3
1,661,961	+		TX73_007700	0.11	-0.4
1,661,969	-		TX73_007700	0.11	-1.1
1,661,976	+		TX73_007700	0.11	-0.3
1,661,976	+		TX73_007700	0.11	-0.6
1,661,989	-		TX73_007700	0.12	-0.7
1,662,009	-		TX73_007700	0.12	-1.0
1,662,026	-		TX73_007700	0.13	+0.3
1,662,038	+		TX73_007700	0.13	+0.5
1,662,046	-		TX73_007700	0.14	+0.0
1,662,089	-		TX73_007700	0.15	+0.2
1,662,131	-		TX73_007700	0.16	-0.4
1,662,131	-		TX73_007700	0.16	-1.4
1,662,143	+		TX73_007700	0.17	-0.2
1,662,151	-		TX73_007700	0.17	-0.2
1,662,151	-		TX73_007700	0.17	+0.2
1,662,151	-		TX73_007700	0.17	-0.2
1,662,151	-		TX73_007700	0.17	-1.4
1,662,162	+		TX73_007700	0.17	-0.1
1,662,185	-		TX73_007700	0.18	+0.2
1,662,204	-		TX73_007700	0.19	+0.6
1,662,271	+		TX73_007700	0.21	-1.2
1,662,279	-		TX73_007700	0.21	-0.4
1,662,291	+		TX73_007700	0.21	-1.3
1,662,291	+		TX73_007700	0.21	-2.2
1,662,291	+		TX73_007700	0.21	-0.3
1,662,291	+		TX73_007700	0.21	-0.1
1,662,298	-		TX73_007700	0.22	-1.1
1,662,299	-		TX73_007700	0.22	+0.8
1,662,299	-		TX73_007700	0.22	-0.4
1,662,301	+		TX73_007700	0.22	-1.3
1,662,337	-		TX73_007700	0.23	-0.7
1,662,355	+		TX73_007700	0.23	+0.8
1,662,355	+		TX73_007700	0.23	+0.9
1,662,355	+		TX73_007700	0.23	+0.2
1,662,357	+		TX73_007700	0.23	-0.8
1,662,382	+		TX73_007700	0.24	-1.5
1,662,390	-		TX73_007700	0.25	-0.7
1,662,390	-		TX73_007700	0.25	-1.2
1,662,390	-		TX73_007700	0.25	+0.7
1,662,413	+		TX73_007700	0.25	+0.0
1,662,430	+		TX73_007700	0.26	+0.0
1,662,474	+		TX73_007700	0.27	-0.6
1,662,491	-		TX73_007700	0.28	+1.6
1,662,515	-		TX73_007700	0.28	+1.8
1,662,528	+		TX73_007700	0.29	+0.6
1,662,536	-		TX73_007700	0.29	-1.6
1,662,571	+		TX73_007700	0.30	+0.2
1,662,588	+		TX73_007700	0.31	-0.1
1,662,596	-		TX73_007700	0.31	-1.3
1,662,608	+		TX73_007700	0.31	-0.6
1,662,638	+		TX73_007700	0.32	+0.2
1,662,638	-		TX73_007700	0.32	+0.5
1,662,644	+		TX73_007700	0.33	-0.3
1,662,665	-		TX73_007700	0.33	+0.5
1,662,714	-		TX73_007700	0.35	+0.9
1,662,735	+		TX73_007700	0.35	+0.8
1,662,740	+		TX73_007700	0.36	+0.4
1,662,748	-		TX73_007700	0.36	-2.7
1,662,748	-		TX73_007700	0.36	-0.4
1,662,856	+		TX73_007700	0.39	-0.4
1,662,866	+		TX73_007700	0.40	-0.3
1,662,874	-		TX73_007700	0.40	+1.1
1,662,941	-		TX73_007700	0.42	+0.3
1,662,943	+		TX73_007700	0.42	+0.5
1,662,949	+		TX73_007700	0.42	-0.0
1,662,949	+		TX73_007700	0.42	-0.7
1,662,957	-		TX73_007700	0.42	+0.6
1,662,957	-		TX73_007700	0.42	+0.4
1,662,976	-		TX73_007700	0.43	+0.6
1,662,976	-		TX73_007700	0.43	-1.0
1,662,988	+		TX73_007700	0.43	+1.3
1,663,017	-		TX73_007700	0.44	-0.4
1,663,059	-		TX73_007700	0.46	+0.5
1,663,100	+		TX73_007700	0.47	+0.1
1,663,108	-		TX73_007700	0.47	+2.2
1,663,119	+		TX73_007700	0.48	+0.7
1,663,119	+		TX73_007700	0.48	-1.5
1,663,132	-		TX73_007700	0.48	+0.8
1,663,233	+		TX73_007700	0.51	+0.4
1,663,241	-		TX73_007700	0.51	+0.5
1,663,243	+		TX73_007700	0.51	+0.5
1,663,246	-		TX73_007700	0.52	-0.7
1,663,246	-		TX73_007700	0.52	-1.4
1,663,246	-		TX73_007700	0.52	-0.1
1,663,248	+		TX73_007700	0.52	-0.6
1,663,248	+		TX73_007700	0.52	+0.7
1,663,251	-		TX73_007700	0.52	+0.5
1,663,256	-		TX73_007700	0.52	+2.6
1,663,268	-		TX73_007700	0.52	+0.3
1,663,306	+		TX73_007700	0.53	-0.7
1,663,311	+		TX73_007700	0.54	-0.7
1,663,377	-		TX73_007700	0.56	-0.5
1,663,397	-		TX73_007700	0.56	-0.5
1,663,443	+		TX73_007700	0.58	-0.2
1,663,451	-		TX73_007700	0.58	-1.5
1,663,451	-		TX73_007700	0.58	+0.4
1,663,463	+		TX73_007700	0.58	+0.7
1,663,463	+		TX73_007700	0.58	+1.5
1,663,507	-		TX73_007700	0.60	+0.7
1,663,507	-		TX73_007700	0.60	+0.1
1,663,507	-		TX73_007700	0.60	+0.1
1,663,533	+		TX73_007700	0.61	+1.3
1,663,586	+		TX73_007700	0.62	+0.2
1,663,588	+		TX73_007700	0.62	-0.7
1,663,588	+		TX73_007700	0.62	+0.5
1,663,663	+		TX73_007700	0.65	+0.3
1,663,665	-		TX73_007700	0.65	-0.0
1,663,680	+		TX73_007700	0.65	-1.0
1,663,685	+		TX73_007700	0.65	-0.8
1,663,685	+		TX73_007700	0.65	+0.1
1,663,686	+		TX73_007700	0.65	-0.4
1,663,688	-		TX73_007700	0.65	-0.3
1,663,720	+		TX73_007700	0.67	+1.3
1,663,731	+		TX73_007700	0.67	-1.3
1,663,739	-		TX73_007700	0.67	-0.1
1,663,742	+		TX73_007700	0.67	-0.4
1,663,747	+		TX73_007700	0.67	+0.4
1,663,750	-		TX73_007700	0.67	+0.6
1,663,750	-		TX73_007700	0.67	+0.7
1,663,750	-		TX73_007700	0.67	-0.4
1,663,750	-		TX73_007700	0.67	-0.1
1,663,775	+		TX73_007700	0.68	-1.2
1,663,822	+		TX73_007700	0.70	+0.5
1,663,830	-		TX73_007700	0.70	-2.0
1,663,840	-		TX73_007700	0.70	-1.0
1,663,848	-		TX73_007700	0.71	-0.3
1,663,866	+		TX73_007700	0.71	+0.0
1,663,866	+		TX73_007700	0.71	+0.2
1,663,912	-		TX73_007700	0.73	-1.1
1,663,932	-		TX73_007700	0.73	+0.6
1,663,932	-		TX73_007700	0.73	+0.2
1,663,945	-		TX73_007700	0.74	-0.9
1,663,958	+		TX73_007700	0.74	+1.4
1,663,968	+		TX73_007700	0.74	-1.0
1,663,976	-		TX73_007700	0.75	-0.8
1,664,070	+		TX73_007700	0.78	+0.2
1,664,091	-		TX73_007700	0.78	+0.2
1,664,176	-		TX73_007700	0.81	+0.7
1,664,217	-		TX73_007700	0.82	+0.9
1,664,278	-		TX73_007700	0.84	+0.5
1,664,278	-		TX73_007700	0.84	-0.1
1,664,303	+		TX73_007700	0.85	-2.8
1,664,368	-		TX73_007700	0.87	-0.7
1,664,434	-		TX73_007700	0.89	-1.1
1,664,460	+		TX73_007700	0.90	-0.5
1,664,462	+		TX73_007700	0.90	+0.4
1,664,485	+				-0.6
1,664,488	-				-0.0
1,664,530	+				-2.0
1,664,542	+				-0.8
1,664,548	-				-0.1
1,664,550	-				+0.0
1,664,606	-				+0.2
1,664,690	+				+0.2
1,664,704	+				+0.0
1,664,769	+				+0.3
1,664,773	-				-0.8
1,664,806	+				+0.5
1,664,836	-				-0.1
1,665,015	+		TX73_007705	0.22	+1.0
1,665,021	-		TX73_007705	0.23	-0.6
1,665,041	+		TX73_007705	0.27	-1.7
1,665,104	+		TX73_007705	0.41	+0.4
1,665,104	+		TX73_007705	0.41	+0.1
1,665,128	+		TX73_007705	0.47	-1.1
1,665,128	+		TX73_007705	0.47	+0.6
1,665,128	+		TX73_007705	0.47	+0.4
1,665,161	+		TX73_007705	0.54	-0.6
1,665,179	+		TX73_007705	0.58	-0.1
1,665,245	-		TX73_007705	0.72	-1.3
1,665,290	-		TX73_007705	0.82	-1.5
1,665,310	-		TX73_007705	0.87	-0.8
1,665,322	-		TX73_007705	0.89	+0.2
1,665,351	-				+0.4
1,665,363	-				+0.5
1,665,387	-				-0.9
1,665,439	+				-0.4
1,665,514	+				+1.2
1,665,518	-				-0.0
1,665,578	-				+0.2
1,665,596	-				+0.6
1,665,597	+				-1.6
1,665,617	+				+0.4
1,665,624	+				-1.5
1,665,639	+				-0.2
1,665,657	-				+0.6
1,665,692	-		TX73_007710	0.14	+0.2
1,665,701	-		TX73_007710	0.16	-0.3