Experiment: PM with butyrate aerobic in dark
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_002125 and TX73_002130 are separated by 175 nucleotides TX73_002130 and TX73_002135 are separated by 76 nucleotides TX73_002135 and TX73_002140 are separated by 29 nucleotides
TX73_002125: TX73_002125 - NAD(P)/FAD-dependent oxidoreductase, at 452,248 to 453,516
_002125
TX73_002130: TX73_002130 - GNAT family N-acetyltransferase, at 453,692 to 454,201
_002130
TX73_002135: TX73_002135 - inorganic diphosphatase, at 454,278 to 454,814
_002135
TX73_002140: TX73_002140 - M20 family peptidase, at 454,844 to 456,331
_002140
Position (kb) 453
454
455 Strain fitness (log2 ratio) -2
-1
0
1
2 at 452.698 kb on + strand, within TX73_002125 at 452.700 kb on - strand, within TX73_002125 at 452.711 kb on + strand, within TX73_002125 at 452.742 kb on - strand, within TX73_002125 at 452.771 kb on + strand, within TX73_002125 at 452.771 kb on + strand, within TX73_002125 at 452.796 kb on - strand, within TX73_002125 at 452.796 kb on - strand, within TX73_002125 at 452.796 kb on - strand, within TX73_002125 at 452.833 kb on + strand, within TX73_002125 at 452.833 kb on + strand, within TX73_002125 at 452.833 kb on + strand, within TX73_002125 at 452.841 kb on - strand, within TX73_002125 at 452.841 kb on - strand, within TX73_002125 at 452.841 kb on - strand, within TX73_002125 at 452.841 kb on - strand, within TX73_002125 at 452.843 kb on - strand, within TX73_002125 at 452.846 kb on - strand, within TX73_002125 at 452.851 kb on - strand, within TX73_002125 at 452.877 kb on + strand, within TX73_002125 at 452.891 kb on - strand, within TX73_002125 at 452.922 kb on - strand, within TX73_002125 at 452.927 kb on + strand, within TX73_002125 at 452.932 kb on + strand, within TX73_002125 at 452.936 kb on + strand, within TX73_002125 at 452.971 kb on + strand, within TX73_002125 at 452.991 kb on + strand, within TX73_002125 at 452.999 kb on - strand, within TX73_002125 at 453.038 kb on + strand, within TX73_002125 at 453.046 kb on - strand, within TX73_002125 at 453.081 kb on + strand, within TX73_002125 at 453.116 kb on + strand, within TX73_002125 at 453.116 kb on + strand, within TX73_002125 at 453.116 kb on + strand, within TX73_002125 at 453.124 kb on - strand, within TX73_002125 at 453.124 kb on - strand, within TX73_002125 at 453.145 kb on - strand, within TX73_002125 at 453.182 kb on + strand, within TX73_002125 at 453.182 kb on + strand, within TX73_002125 at 453.190 kb on - strand, within TX73_002125 at 453.190 kb on - strand, within TX73_002125 at 453.231 kb on - strand, within TX73_002125 at 453.268 kb on - strand, within TX73_002125 at 453.293 kb on + strand, within TX73_002125 at 453.326 kb on + strand, within TX73_002125 at 453.349 kb on - strand, within TX73_002125 at 453.415 kb on + strand at 453.418 kb on - strand at 453.423 kb on + strand at 453.423 kb on + strand at 453.458 kb on + strand at 453.458 kb on + strand at 453.510 kb on + strand at 453.525 kb on - strand at 453.546 kb on + strand at 453.549 kb on - strand at 453.555 kb on + strand at 453.588 kb on + strand at 453.598 kb on + strand at 453.598 kb on + strand at 453.598 kb on + strand at 453.598 kb on + strand at 453.598 kb on + strand at 453.606 kb on - strand at 453.606 kb on - strand at 453.606 kb on - strand at 453.606 kb on - strand at 453.606 kb on - strand at 453.606 kb on - strand at 453.606 kb on - strand at 453.654 kb on + strand at 453.672 kb on + strand at 453.677 kb on + strand at 453.677 kb on + strand at 453.682 kb on + strand at 453.685 kb on - strand at 453.696 kb on + strand at 453.701 kb on + strand at 453.704 kb on - strand at 453.706 kb on + strand at 453.711 kb on + strand at 453.718 kb on + strand at 453.721 kb on + strand at 453.739 kb on + strand at 453.739 kb on - strand at 453.745 kb on + strand, within TX73_002130 at 453.755 kb on + strand, within TX73_002130 at 453.764 kb on - strand, within TX73_002130 at 453.785 kb on - strand, within TX73_002130 at 453.789 kb on + strand, within TX73_002130 at 453.790 kb on - strand, within TX73_002130 at 453.859 kb on + strand, within TX73_002130 at 453.894 kb on - strand, within TX73_002130 at 453.901 kb on - strand, within TX73_002130 at 453.902 kb on + strand, within TX73_002130 at 453.914 kb on + strand, within TX73_002130 at 453.914 kb on + strand, within TX73_002130 at 453.919 kb on + strand, within TX73_002130 at 453.957 kb on - strand, within TX73_002130 at 453.957 kb on - strand, within TX73_002130 at 453.969 kb on + strand, within TX73_002130 at 453.970 kb on + strand, within TX73_002130 at 453.971 kb on + strand, within TX73_002130 at 453.971 kb on + strand, within TX73_002130 at 453.977 kb on - strand, within TX73_002130 at 453.979 kb on - strand, within TX73_002130 at 453.991 kb on + strand, within TX73_002130 at 454.038 kb on + strand, within TX73_002130 at 454.038 kb on + strand, within TX73_002130 at 454.051 kb on - strand, within TX73_002130 at 454.051 kb on - strand, within TX73_002130 at 454.052 kb on + strand, within TX73_002130 at 454.060 kb on + strand, within TX73_002130 at 454.060 kb on - strand, within TX73_002130 at 454.060 kb on - strand, within TX73_002130 at 454.060 kb on - strand, within TX73_002130 at 454.061 kb on - strand, within TX73_002130 at 454.069 kb on + strand, within TX73_002130 at 454.069 kb on + strand, within TX73_002130 at 454.070 kb on - strand, within TX73_002130 at 454.077 kb on - strand, within TX73_002130 at 454.077 kb on - strand, within TX73_002130 at 454.081 kb on + strand, within TX73_002130 at 454.087 kb on - strand, within TX73_002130 at 454.105 kb on + strand, within TX73_002130 at 454.143 kb on + strand, within TX73_002130 at 454.143 kb on + strand, within TX73_002130 at 454.145 kb on + strand, within TX73_002130 at 454.148 kb on + strand, within TX73_002130 at 454.161 kb on - strand at 454.166 kb on - strand at 454.166 kb on - strand at 454.181 kb on + strand at 454.235 kb on + strand at 454.272 kb on + strand at 454.792 kb on + strand at 454.811 kb on - strand at 454.816 kb on - strand at 454.816 kb on - strand at 454.817 kb on - strand at 454.844 kb on + strand at 454.852 kb on - strand at 454.879 kb on - strand at 454.910 kb on + strand at 454.910 kb on + strand at 454.918 kb on - strand at 454.922 kb on + strand at 454.927 kb on + strand at 454.930 kb on - strand at 454.930 kb on - strand at 454.946 kb on - strand at 454.958 kb on - strand at 454.976 kb on + strand at 455.024 kb on + strand, within TX73_002140 at 455.035 kb on + strand, within TX73_002140 at 455.061 kb on + strand, within TX73_002140 at 455.064 kb on - strand, within TX73_002140 at 455.064 kb on - strand, within TX73_002140 at 455.066 kb on + strand, within TX73_002140 at 455.069 kb on - strand, within TX73_002140 at 455.076 kb on + strand, within TX73_002140 at 455.100 kb on + strand, within TX73_002140 at 455.110 kb on - strand, within TX73_002140 at 455.125 kb on + strand, within TX73_002140 at 455.133 kb on - strand, within TX73_002140 at 455.135 kb on + strand, within TX73_002140 at 455.160 kb on + strand, within TX73_002140 at 455.168 kb on - strand, within TX73_002140 at 455.168 kb on - strand, within TX73_002140 at 455.168 kb on - strand, within TX73_002140 at 455.170 kb on + strand, within TX73_002140 at 455.170 kb on + strand, within TX73_002140 at 455.170 kb on + strand, within TX73_002140 at 455.170 kb on + strand, within TX73_002140 at 455.170 kb on + strand, within TX73_002140 at 455.170 kb on + strand, within TX73_002140 at 455.170 kb on + strand, within TX73_002140 at 455.170 kb on + strand, within TX73_002140 at 455.178 kb on - strand, within TX73_002140 at 455.178 kb on - strand, within TX73_002140 at 455.178 kb on - strand, within TX73_002140 at 455.178 kb on - strand, within TX73_002140 at 455.178 kb on - strand, within TX73_002140 at 455.180 kb on + strand, within TX73_002140
Per-strain Table
Position Strand Gene LocusTag Fraction PM with butyrate aerobic in dark remove 452,698 + TX73_002125 0.35 +0.6 452,700 - TX73_002125 0.36 +0.4 452,711 + TX73_002125 0.36 +0.6 452,742 - TX73_002125 0.39 -0.2 452,771 + TX73_002125 0.41 -0.8 452,771 + TX73_002125 0.41 -1.9 452,796 - TX73_002125 0.43 -0.1 452,796 - TX73_002125 0.43 -0.8 452,796 - TX73_002125 0.43 -1.3 452,833 + TX73_002125 0.46 +0.1 452,833 + TX73_002125 0.46 -1.3 452,833 + TX73_002125 0.46 -0.7 452,841 - TX73_002125 0.47 -0.3 452,841 - TX73_002125 0.47 +0.0 452,841 - TX73_002125 0.47 -0.8 452,841 - TX73_002125 0.47 +0.2 452,843 - TX73_002125 0.47 +1.2 452,846 - TX73_002125 0.47 -1.8 452,851 - TX73_002125 0.48 +0.0 452,877 + TX73_002125 0.50 +0.1 452,891 - TX73_002125 0.51 +0.3 452,922 - TX73_002125 0.53 -0.3 452,927 + TX73_002125 0.54 +0.2 452,932 + TX73_002125 0.54 -0.6 452,936 + TX73_002125 0.54 -0.5 452,971 + TX73_002125 0.57 -0.8 452,991 + TX73_002125 0.59 +0.3 452,999 - TX73_002125 0.59 +0.2 453,038 + TX73_002125 0.62 +0.3 453,046 - TX73_002125 0.63 +0.8 453,081 + TX73_002125 0.66 -1.5 453,116 + TX73_002125 0.68 -0.3 453,116 + TX73_002125 0.68 +0.0 453,116 + TX73_002125 0.68 -0.5 453,124 - TX73_002125 0.69 +0.3 453,124 - TX73_002125 0.69 -0.6 453,145 - TX73_002125 0.71 +0.9 453,182 + TX73_002125 0.74 +0.5 453,182 + TX73_002125 0.74 -0.6 453,190 - TX73_002125 0.74 -0.2 453,190 - TX73_002125 0.74 -0.7 453,231 - TX73_002125 0.77 +0.5 453,268 - TX73_002125 0.80 -1.1 453,293 + TX73_002125 0.82 +0.1 453,326 + TX73_002125 0.85 -1.1 453,349 - TX73_002125 0.87 +0.8 453,415 + -0.3 453,418 - +0.3 453,423 + +0.3 453,423 + -0.1 453,458 + +0.5 453,458 + -0.7 453,510 + -0.3 453,525 - +0.5 453,546 + +0.1 453,549 - +0.1 453,555 + +0.5 453,588 + +0.7 453,598 + -1.0 453,598 + -0.7 453,598 + -0.0 453,598 + +0.1 453,598 + +0.6 453,606 - -0.7 453,606 - -0.1 453,606 - +0.7 453,606 - -0.3 453,606 - -0.7 453,606 - -0.6 453,606 - -0.2 453,654 + -0.8 453,672 + -1.2 453,677 + -0.3 453,677 + -0.3 453,682 + +0.9 453,685 - -1.7 453,696 + +1.6 453,701 + -2.1 453,704 - -1.7 453,706 + +0.5 453,711 + -1.6 453,718 + +0.3 453,721 + -0.8 453,739 + -1.1 453,739 - -1.5 453,745 + TX73_002130 0.10 +0.8 453,755 + TX73_002130 0.12 -1.3 453,764 - TX73_002130 0.14 +0.4 453,785 - TX73_002130 0.18 +0.2 453,789 + TX73_002130 0.19 +0.2 453,790 - TX73_002130 0.19 -0.0 453,859 + TX73_002130 0.33 -1.6 453,894 - TX73_002130 0.40 -0.2 453,901 - TX73_002130 0.41 -0.2 453,902 + TX73_002130 0.41 +0.1 453,914 + TX73_002130 0.44 -1.2 453,914 + TX73_002130 0.44 +1.1 453,919 + TX73_002130 0.45 -0.2 453,957 - TX73_002130 0.52 -0.7 453,957 - TX73_002130 0.52 +0.3 453,969 + TX73_002130 0.54 -1.0 453,970 + TX73_002130 0.55 -0.3 453,971 + TX73_002130 0.55 -0.9 453,971 + TX73_002130 0.55 -0.0 453,977 - TX73_002130 0.56 +0.5 453,979 - TX73_002130 0.56 -1.3 453,991 + TX73_002130 0.59 -1.2 454,038 + TX73_002130 0.68 +0.8 454,038 + TX73_002130 0.68 -0.4 454,051 - TX73_002130 0.70 +0.9 454,051 - TX73_002130 0.70 -1.7 454,052 + TX73_002130 0.71 +0.2 454,060 + TX73_002130 0.72 -1.0 454,060 - TX73_002130 0.72 +0.8 454,060 - TX73_002130 0.72 -1.1 454,060 - TX73_002130 0.72 -0.7 454,061 - TX73_002130 0.72 -0.9 454,069 + TX73_002130 0.74 +0.3 454,069 + TX73_002130 0.74 -0.4 454,070 - TX73_002130 0.74 +0.2 454,077 - TX73_002130 0.75 -0.2 454,077 - TX73_002130 0.75 -2.5 454,081 + TX73_002130 0.76 +0.1 454,087 - TX73_002130 0.77 +0.5 454,105 + TX73_002130 0.81 +0.3 454,143 + TX73_002130 0.88 -0.5 454,143 + TX73_002130 0.88 -0.4 454,145 + TX73_002130 0.89 -0.8 454,148 + TX73_002130 0.89 -0.7 454,161 - -1.8 454,166 - -1.5 454,166 - +0.9 454,181 + -0.6 454,235 + +0.1 454,272 + +0.8 454,792 + +0.8 454,811 - -0.2 454,816 - +0.4 454,816 - -0.6 454,817 - -0.6 454,844 + +0.0 454,852 - -0.8 454,879 - -0.9 454,910 + -1.2 454,910 + -0.3 454,918 - +0.1 454,922 + +1.5 454,927 + +0.6 454,930 - +1.0 454,930 - -1.2 454,946 - -0.5 454,958 - -0.0 454,976 + -0.9 455,024 + TX73_002140 0.12 -0.4 455,035 + TX73_002140 0.13 -0.0 455,061 + TX73_002140 0.15 +0.4 455,064 - TX73_002140 0.15 -1.1 455,064 - TX73_002140 0.15 -1.2 455,066 + TX73_002140 0.15 -0.2 455,069 - TX73_002140 0.15 -0.3 455,076 + TX73_002140 0.16 +0.1 455,100 + TX73_002140 0.17 -0.2 455,110 - TX73_002140 0.18 -0.4 455,125 + TX73_002140 0.19 +0.1 455,133 - TX73_002140 0.19 +0.3 455,135 + TX73_002140 0.20 -0.3 455,160 + TX73_002140 0.21 -0.8 455,168 - TX73_002140 0.22 -0.5 455,168 - TX73_002140 0.22 +0.8 455,168 - TX73_002140 0.22 +0.0 455,170 + TX73_002140 0.22 +0.9 455,170 + TX73_002140 0.22 -0.5 455,170 + TX73_002140 0.22 +0.1 455,170 + TX73_002140 0.22 +0.7 455,170 + TX73_002140 0.22 +1.8 455,170 + TX73_002140 0.22 +0.2 455,170 + TX73_002140 0.22 +0.7 455,170 + TX73_002140 0.22 -0.3 455,178 - TX73_002140 0.22 +0.3 455,178 - TX73_002140 0.22 -0.3 455,178 - TX73_002140 0.22 +0.6 455,178 - TX73_002140 0.22 +0.1 455,178 - TX73_002140 0.22 +0.0 455,180 + TX73_002140 0.23 +1.2
Or see this region's nucleotide sequence